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NCBI Reference Sequence: NZ_WTEJ01000047.1
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LOCUS NZ_WTEJ01000047 559 bp DNA linear CON 17-SEP-2024 DEFINITION Klebsiella pneumoniae strain K509 K509_47, whole genome shotgun sequence. ACCESSION NZ_WTEJ01000047 NZ_WTEJ01000000 VERSION NZ_WTEJ01000047.1 DBLINK BioProject: PRJNA224116 BioSample: SAMN13563923 Assembly: GCF_019401165.1 KEYWORDS WGS; RefSeq. SOURCE Klebsiella pneumoniae ORGANISM Klebsiella pneumoniae Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella; Klebsiella pneumoniae complex. REFERENCE 1 (bases 1 to 559) AUTHORS Zhao,Q., Guo,L., Wang,L. and Shen,D. TITLE Emergency and characteristics of hypervirulent Klebsiella pneumoniae causing surgical site infection JOURNAL Unpublished REFERENCE 2 (bases 1 to 559) AUTHORS Zhao,Q., Guo,L., Wang,L. and Shen,D. TITLE Direct Submission JOURNAL Submitted (17-DEC-2019) Medical Test Center, Chinese PLA General Hospital, Fuxing Street, Beijing 100853, China COMMENT REFSEQ INFORMATION: The reference sequence is identical to WTEJ01000047.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: SPAdes v. 3.12 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 100x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_019401165.1-RS_2024_09_17 Annotation Date :: 09/17/2024 07:02:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.8 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 5,344 CDSs (total) :: 5,251 Genes (coding) :: 5,120 CDSs (with protein) :: 5,120 Genes (RNA) :: 93 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1 (5S, 23S) partial rRNAs :: 1 (16S) tRNAs :: 79 ncRNAs :: 11 Pseudo Genes (total) :: 131 CDSs (without protein) :: 131 Pseudo Genes (ambiguous residues) :: 0 of 131 Pseudo Genes (frameshifted) :: 63 of 131 Pseudo Genes (incomplete) :: 67 of 131 Pseudo Genes (internal stop) :: 21 of 131 Pseudo Genes (multiple problems) :: 16 of 131 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..559 /organism="Klebsiella pneumoniae" /mol_type="genomic DNA" /submitter_seqid="K509_47" /strain="K509" /isolation_source="wound secretion" /host="Homo sapiens" /db_xref="taxon:573" /geo_loc_name="China: Beijing" /collection_date="2016-04-10" gene <1..>559 /locus_tag="GQQ65_RS26455" /old_locus_tag="GQQ65_26085" CDS <1..>559 /locus_tag="GQQ65_RS26455" /old_locus_tag="GQQ65_26085" /inference="COORDINATES: similar to AA sequence:RefSeq:YP_005229527.1" /GO_component="GO:0016020 - membrane [Evidence IEA]" /GO_function="GO:0015288 - porin activity [Evidence IEA]" /GO_process="GO:0034219 - carbohydrate transmembrane transport [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=2 /transl_table=11 /product="carbohydrate porin" /protein_id="WP_186527977.1" /translation="WAGRDFHQRPQQGINDYFWMNHDGQGAGVKNFDIGGVQFDVAAV SQVKSCSPEVMADETNPSRITCTGSSNTGDNGHYALTTKTHNIKAGPIDVEVYANYGF DSKAVDSDARLEAWQGGLVLSHTNDSGVNKVILRYSDNSDNSVYNKTDALTTVYASFE GSHKFTQQAQVEYLLAFHDYDNGKDN" CONTIG join(WTEJ01000047.1:1..559) //
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