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Klebsiella pneumoniae strain K509 K509_47, whole genome shotgun sequence

NCBI Reference Sequence: NZ_WTEJ01000047.1

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LOCUS       NZ_WTEJ01000047          559 bp    DNA     linear   CON 17-SEP-2024
DEFINITION  Klebsiella pneumoniae strain K509 K509_47, whole genome shotgun
            sequence.
ACCESSION   NZ_WTEJ01000047 NZ_WTEJ01000000
VERSION     NZ_WTEJ01000047.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13563923
            Assembly: GCF_019401165.1
KEYWORDS    WGS; RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Klebsiella/Raoultella group;
            Klebsiella; Klebsiella pneumoniae complex.
REFERENCE   1  (bases 1 to 559)
  AUTHORS   Zhao,Q., Guo,L., Wang,L. and Shen,D.
  TITLE     Emergency and characteristics of hypervirulent Klebsiella
            pneumoniae causing surgical site infection
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 559)
  AUTHORS   Zhao,Q., Guo,L., Wang,L. and Shen,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-DEC-2019) Medical Test Center, Chinese PLA General
            Hospital, Fuxing Street, Beijing 100853, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WTEJ01000047.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.12
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_019401165.1-RS_2024_09_17
            Annotation Date                   :: 09/17/2024 07:02:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,344
            CDSs (total)                      :: 5,251
            Genes (coding)                    :: 5,120
            CDSs (with protein)               :: 5,120
            Genes (RNA)                       :: 93
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 79
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 131
            CDSs (without protein)            :: 131
            Pseudo Genes (ambiguous residues) :: 0 of 131
            Pseudo Genes (frameshifted)       :: 63 of 131
            Pseudo Genes (incomplete)         :: 67 of 131
            Pseudo Genes (internal stop)      :: 21 of 131
            Pseudo Genes (multiple problems)  :: 16 of 131
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..559
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /submitter_seqid="K509_47"
                     /strain="K509"
                     /isolation_source="wound secretion"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /geo_loc_name="China: Beijing"
                     /collection_date="2016-04-10"
     gene            <1..>559
                     /locus_tag="GQQ65_RS26455"
                     /old_locus_tag="GQQ65_26085"
     CDS             <1..>559
                     /locus_tag="GQQ65_RS26455"
                     /old_locus_tag="GQQ65_26085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229527.1"
                     /GO_component="GO:0016020 - membrane [Evidence IEA]"
                     /GO_function="GO:0015288 - porin activity [Evidence IEA]"
                     /GO_process="GO:0034219 - carbohydrate transmembrane
                     transport [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="carbohydrate porin"
                     /protein_id="WP_186527977.1"
                     /translation="WAGRDFHQRPQQGINDYFWMNHDGQGAGVKNFDIGGVQFDVAAV
                     SQVKSCSPEVMADETNPSRITCTGSSNTGDNGHYALTTKTHNIKAGPIDVEVYANYGF
                     DSKAVDSDARLEAWQGGLVLSHTNDSGVNKVILRYSDNSDNSVYNKTDALTTVYASFE
                     GSHKFTQQAQVEYLLAFHDYDNGKDN"
CONTIG      join(WTEJ01000047.1:1..559)
//
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