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NCBI Reference Sequence: NZ_VTOT01000064.1
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LOCUS NZ_VTOT01000064 5978 bp DNA linear CON 22-DEC-2024 DEFINITION Escherichia coli strain EC36291 36291_S17-contig_64, whole genome shotgun sequence. ACCESSION NZ_VTOT01000064 NZ_VTOT01000000 VERSION NZ_VTOT01000064.1 DBLINK BioProject: PRJNA224116 BioSample: SAMN12636342 Assembly: GCF_009899505.1 KEYWORDS WGS; RefSeq. SOURCE Escherichia coli ORGANISM Escherichia coli Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia. REFERENCE 1 (bases 1 to 5978) AUTHORS Valat,C. TITLE Direct Submission JOURNAL Submitted (27-AUG-2019) AVB, Anses, 31 Avenue Tony Garnier, Lyon 69007, France COMMENT REFSEQ INFORMATION: The reference sequence is identical to VTOT01000064.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 25-OCT-2018 Assembly Method :: Unicycler v. 0.4.8-beta Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 10.0x Sequencing Technology :: Illumina MiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_009899505.1-RS_2024_12_22 Annotation Date :: 12/22/2024 03:01:28 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,998 CDSs (total) :: 4,906 Genes (coding) :: 4,705 CDSs (with protein) :: 4,705 Genes (RNA) :: 92 rRNAs :: 2, 1, 1 (5S, 16S, 23S) complete rRNAs :: 2, 1, 1 (5S, 16S, 23S) tRNAs :: 79 ncRNAs :: 9 Pseudo Genes (total) :: 201 CDSs (without protein) :: 201 Pseudo Genes (ambiguous residues) :: 0 of 201 Pseudo Genes (frameshifted) :: 73 of 201 Pseudo Genes (incomplete) :: 149 of 201 Pseudo Genes (internal stop) :: 34 of 201 Pseudo Genes (multiple problems) :: 49 of 201 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5978 /organism="Escherichia coli" /mol_type="genomic DNA" /submitter_seqid="36291_S17-contig_64" /strain="EC36291" /host="bovine" /db_xref="taxon:562" /geo_loc_name="France" /lat_lon="48.1333 N 2.2333 W" /collection_date="2014-04-08" /collected_by="Anses" gene complement(<1..253) /locus_tag="FZC20_RS22340" /old_locus_tag="FZC20_22750" CDS complement(<1..253) /locus_tag="FZC20_RS22340" /old_locus_tag="FZC20_22750" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_076612086.1" /GO_function="GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]" /GO_process="GO:0006313 - DNA transposition [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="transposase" /protein_id="WP_000165167.1" /translation="MTKNTRFSPEVRQRAVRMVLESQGEYDSQWAAICSIAPKIGCTP ETLRVWVRQHERDTGGGDGGLTSAERQRLKELERENRELR" gene 442..1026 /locus_tag="FZC20_RS22345" /old_locus_tag="FZC20_22755" CDS 442..1026 /locus_tag="FZC20_RS22345" /old_locus_tag="FZC20_22755" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_000517560.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_000517560.1" /translation="MGKMKELLFEIQEERTDEWIAENYTDAEEGTPEWDAAAQEYSWF QDWMEEAAEQQYFEASLASIPDRLQDAKDELFELENLMQFNQPGIVERMAYVHCVSVL DSFLMYSARALLNHPPHLQRFLQVADSLIANKEDRRKLRASKWVEQEPDTATPEKVYT WRAQSLVAKKTFQSHKVIDRYFSTMLATPHEWPL" gene <1248..1790 /locus_tag="FZC20_RS22350" /old_locus_tag="FZC20_22760" /pseudo CDS <1248..1790 /locus_tag="FZC20_RS22350" /old_locus_tag="FZC20_22760" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001164196.1" /GO_function="GO:0003677 - DNA binding [Evidence IEA]" /GO_process="GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]" /note="internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="tyrosine-type recombinase/integrase" gene 1972..2616 /locus_tag="FZC20_RS22355" /old_locus_tag="FZC20_22765" CDS 1972..2616 /locus_tag="FZC20_RS22355" /old_locus_tag="FZC20_22765" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001144037.1" /GO_function="GO:0005524 - ATP binding [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="ParA family protein" /protein_id="WP_001144036.1" /translation="MPVIANTHPKGGVGKTTSSVNIVGEMKSDTVDLDTHTGLSIILG LRPEGKEISVKVPKTVDELIEIMTPYKNSDKTLLIDCGGFDSDLTRTAIAFADCVIVP SKDSLTERIGLMHFDGVLDEISSIMGTDITAHLYLCKVNPNKKKFPKLDAILPSFKHL KLMKSRISARAEFEDVIETGMGITESVHGRYSAGGKEVIALIEEINHLIENNKQ" gene 2703..3011 /locus_tag="FZC20_RS22360" /old_locus_tag="FZC20_22770" CDS 2703..3011 /locus_tag="FZC20_RS22360" /old_locus_tag="FZC20_22770" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_000030202.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="molecular chaperone GroEL" /protein_id="WP_000030206.1" /translation="MSKAKFSAQAEKLKNLVDSARLQTSSSAVTATVPSQPNEGTEEV SGRPVAARTKAKNLKAIPLSYFEAHAELKATSKTSLDFSSYIIEAIREKLERDGAIGQ " gene 3425..4405 /locus_tag="FZC20_RS22365" /old_locus_tag="FZC20_22775" CDS 3425..4405 /locus_tag="FZC20_RS22365" /old_locus_tag="FZC20_22775" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001401593.1" /GO_function="GO:0000166 - nucleotide binding [Evidence IEA]" /GO_process="GO:0030541 - plasmid partitioning [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="plasmid segregation protein ParM" /protein_id="WP_000688502.1" /translation="MKIFIDDGSTNIKLAWLEDGDVKTLISPNSFKPEWSFSLLDDAA PANYEIDGEKFSFDPLSADAVVTTETRYQYSDVNVVAIQHALQQTGLKAQPIDVIVTL PISEYLDANNQKNKQNIERKKKNVMREVRVQGSDAFVIRSVSVLPESIPAGFSVLAGL EDDESLLIVDLGGTTLDVSHVRSKMTGITKTWCDPNIGVSLITSGVKEQMAVHANTRV SSFQADNIIVHRNEPDYLSRRIYNAEQRESIINVINERQKLLIKRVNDVISRFTDYTH VMCVGGGAEIVAEAVKNLTKVPDERFYLSSSPQFDLVMGMIKMKGGVTNE" gene 4398..4814 /locus_tag="FZC20_RS22370" /old_locus_tag="FZC20_22780" CDS 4398..4814 /locus_tag="FZC20_RS22370" /old_locus_tag="FZC20_22780" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001278810.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="plasmid partitioning/stability family protein" /protein_id="WP_001278818.1" /translation="MSDENKSRRCSFELFPDERTGDKIADELIANEKLKERGRFMRAM LVTGAAFAAIDKRLPLLISELLTENTTLDDINKVISSVIPGAFSVEKKLLELLEKQSG LHTSVDCSTPLTEQSLSRNDGEDQTRRNAENMFGDD" gene complement(4816..>5783) /gene="umuC" /locus_tag="FZC20_RS22375" /old_locus_tag="FZC20_22785" /pseudo CDS complement(4816..>5783) /gene="umuC" /locus_tag="FZC20_RS22375" /old_locus_tag="FZC20_22785" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001566943.1" /GO_function="GO:0003684 - damaged DNA binding [Evidence IEA]" /GO_process="GO:0006281 - DNA repair [Evidence IEA]" /note="frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="translesion error-prone DNA polymerase V subunit UmuC" gene complement(5773..>5978) /locus_tag="FZC20_RS22380" /old_locus_tag="FZC20_22790" CDS complement(5773..>5978) /locus_tag="FZC20_RS22380" /old_locus_tag="FZC20_22790" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_000457137.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=3 /transl_table=11 /product="S24 family peptidase" /protein_id="WP_284696647.1" /translation="GDLLVVDRAEKPQHGDIVIAEIDGEFTVKRLLLRPRPALEPVSD SPEFRTLYPENICIFGVVTHVVH" CONTIG join(VTOT01000064.1:1..5978) //
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