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Escherichia coli strain KCJK7048 NODE_66_length_26830_cov_16.186196, whole genome shotgun sequence

NCBI Reference Sequence: NZ_SROK01000066.1

FASTA Graphics 

LOCUS       NZ_SROK01000066        26830 bp    DNA     linear   CON 03-JUL-2024
DEFINITION  Escherichia coli strain KCJK7048
            NODE_66_length_26830_cov_16.186196, whole genome shotgun sequence.
ACCESSION   NZ_SROK01000066 NZ_SROK01000000
VERSION     NZ_SROK01000066.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11334868
            Assembly: GCF_004768285.1
KEYWORDS    WGS; RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 26830)
  AUTHORS   Teng,L.
  TITLE     ESBL E. coli from beef cattle
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 26830)
  AUTHORS   Teng,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-APR-2019) Animal Sciences, University of Florida,
            2055 MOWRY ROAD, Emerging Pathogens Institute, Room 200,
            Gainesville, FL 32608, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SROK01000066.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 72x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004768285.1-RS_2024_07_03
            Annotation Date                   :: 07/03/2024 02:10:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,876
            CDSs (total)                      :: 4,763
            Genes (coding)                    :: 4,607
            CDSs (with protein)               :: 4,607
            Genes (RNA)                       :: 113
            rRNAs                             :: 8, 10, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 5 (5S)
            partial rRNAs                     :: 3, 10, 4 (5S, 16S, 23S)
            tRNAs                             :: 82
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 156
            CDSs (without protein)            :: 156
            Pseudo Genes (ambiguous residues) :: 0 of 156
            Pseudo Genes (frameshifted)       :: 39 of 156
            Pseudo Genes (incomplete)         :: 120 of 156
            Pseudo Genes (internal stop)      :: 25 of 156
            Pseudo Genes (multiple problems)  :: 24 of 156
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26830
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="NODE_66_length_26830_cov_16.186196"
                     /strain="KCJK7048"
                     /isolation_source="feces"
                     /host="beef cattle"
                     /db_xref="taxon:562"
                     /geo_loc_name="USA: Alachua, FL"
                     /lat_lon="29.74 N 82.15 W"
                     /collection_date="2016"
                     /collected_by="University of Florida"
     gene            complement(<170..1032)
                     /gene="istA"
                     /locus_tag="E5P34_RS20035"
                     /old_locus_tag="E5P34_20035"
                     /pseudo
     CDS             complement(<170..1032)
                     /gene="istA"
                     /locus_tag="E5P34_RS20035"
                     /old_locus_tag="E5P34_20035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000174402.1"
                     /GO_function="GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS21 family transposase"
     gene            complement(1440..2687)
                     /gene="pgtA"
                     /locus_tag="E5P34_RS20045"
                     /old_locus_tag="E5P34_20045"
     CDS             complement(1440..2687)
                     /gene="pgtA"
                     /locus_tag="E5P34_RS20045"
                     /old_locus_tag="E5P34_20045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001765251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator PgtA"
                     /protein_id="WP_001298249.1"
                     /translation="MLSSEYSILLIDDDADVLDAYTQLLEQSGYRVFACNNPFEAQAW
                     IQPDWPGIVLSDVCMPGCSGIDLMMLFHQDDQQLPILLITGHGDVPMAVDAVKKGAWD
                     FLQKPVDPGKLLSLVEEALRQRQSIIARRQYCQQTLQVELIGRSEWINQYRRRLQQLS
                     ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAPQLNDFIALAQGGT
                     LVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYYCFAMT
                     QIACLPLTQRPDDIEPLFRHYLCKACQRLNHPVPEVGKEMLKEMMRRMWPNNVRELAN
                     AAELFTVGILPLAETANPLMHVGTPAPLDRRVEDAERQIITEALNIHQGRINEVAEYL
                     QIPRKKLYLRMKKYGLSKEHYKN"
     gene            complement(2677..4686)
                     /gene="pgtB"
                     /locus_tag="E5P34_RS20050"
                     /old_locus_tag="E5P34_20050"
     CDS             complement(2677..4686)
                     /gene="pgtB"
                     /locus_tag="E5P34_RS20050"
                     /old_locus_tag="E5P34_20050"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000790444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     PgtB"
                     /protein_id="WP_000790444.1"
                     /translation="MKNITLWQRLRQVSISTSLRCAFLMGALLTLIVSSVSLYSWHEQ
                     SSQIRYSLDEYFPRIHSAFLIEGNLNLVVDQLNEFLQAPNTTVRLQLRTQIIQHLDTI
                     ERLSRGLSSRERQQLTVILRDSRSLLSELDRALYNMFLLREKVSELSARIDWLHDDFT
                     TELNSLVQDFTWQQGTLLDQIASRQGDTAQYLKRSREVQNEQQQVYTLARIENQIVDD
                     LRDRLNELKSGRDDDTQVETHLRYFENLKKTADENIRMLDDWPGTITLRQTIDELLDM
                     GIVKNKMPDTMREYVAAQKALEDASRTREATLGRFRTLLEAQLGSTHQQMQMFNQRME
                     QIVRVSGGLILVATALALLLAWVFNHYFIRSRLVKRFTLLNQAVVQIGLGGTETTIPV
                     YGNDELGRIAGLLRHTLGQLNVQKQQLEQEITDRKVIEADLRATQDELIQTAKLAVVG
                     QTMTTLAHEINQPLNALSMYLFTARRAIEQTQKEQASMMLGKAEGVISRIDAIIRSLR
                     QFTRRAELETSLHAVDLAQMFSAAWELLAMRHRSLQATLVLPQGTATVSGDEVRTQQV
                     LVNVLANALDVCGQGAVITVNWQMQGKTLNVFIGDNGPGWPEALLPSLLKPFTTSKEV
                     GLGIGLSICVSLMEQMKGELRLASTMTRNACVVLQFRLTDVEDAK"
     gene            complement(4683..5900)
                     /gene="pgtC"
                     /locus_tag="E5P34_RS20055"
                     /old_locus_tag="E5P34_20055"
     CDS             complement(4683..5900)
                     /gene="pgtC"
                     /locus_tag="E5P34_RS20055"
                     /old_locus_tag="E5P34_20055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001317576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate transport regulator PgtC"
                     /protein_id="WP_085960558.1"
                     /translation="MILLLLLMDTGAVRAQRNELVMATTFSPGATAWIIQRWQTEPES
                     VMIRTLNRTSASLEQLLDTANVENVDLILTSSPMLLQHLQEHQKLAPFDDAPAESQNL
                     VPESIRATSVAVAISGFGLLINRPALSVKHLPAPADWDDLALPIYQDALLMSSPSRSD
                     TNHLMVESLLQQKGWVKGWETLLTSAGNLVTISSRSFGVADKIKSGLGVAGPVIDNYA
                     NLLLNDPHLSFTYFPRSAVSPTYVAILKKSPHADAARRFIHYLLSPKGQRILADANTG
                     KYPVTPLAADNPRATQQQLLMNQPPLNYHLILKRQRLVQRLFDTAISFRLAQLKDAWR
                     ALHSTEARLKKPLPEIRALLTQVPVAAASSEDPVWLAQFDNKSFTEQQMMKWQLWFLN
                     NQRLAIKKLEELK"
     gene            6299..7663
                     /gene="pgtP"
                     /locus_tag="E5P34_RS20060"
                     /old_locus_tag="E5P34_20060"
     CDS             6299..7663
                     /gene="pgtP"
                     /locus_tag="E5P34_RS20060"
                     /old_locus_tag="E5P34_20060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019842475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate transporter PgtP"
                     /protein_id="WP_000948757.1"
                     /translation="MLSIFKTGQAADSVPAEKIQVTYRRYRMQALLSVFLGYLAYYIV
                     RNNFTLSTPYLKEQLDLSATQIGVLSSCMLIAYGISKGVMSSLADKASPKVFMACGLV
                     LCAIVNVGLGFSTAFWIFAVLVILNGLFQGMGVGPSFITIANWFPRRERGRVGAFWNI
                     SHNVGGGIVAPIVGAAFALLGSEHWQSASYIVPACVAIVFAVIVLILGKGSPRQEGLP
                     SLEEMMPEEKVVLNTRQTVKAPENMSAFQIFCTYVLRNKNAWYVSLVDVFVYMVRFGM
                     ISWLPIYLLTVKHFSKEQMSVAFLFFEWAAIPSTLLAGWLSDKLFKGRRMPLAMICMA
                     LIFICLIGYWKSESLFMVTIFAAIVGCLIYVPQFLASVQTMEIVPSFAVGSAVGLRGF
                     MSYIFGASLGTSLFGIMVDHIGWHGGFYLLGCGIICCIIFCWLSHRGAIELERHRAAY
                     IKEH"
     gene            7706..8071
                     /locus_tag="E5P34_RS20065"
                     /old_locus_tag="E5P34_20065"
     CDS             7706..8071
                     /locus_tag="E5P34_RS20065"
                     /old_locus_tag="E5P34_20065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001536555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000639468.1"
                     /translation="MIYKISGNQRLIWKFYKTDDNKWRWYCHEKNGYLISQSDNAYNS
                     QLLCIKNAKKQGYSDESVLPLFLHISYIQEKGWKWYQYYDCGYIVKQASVFFPTYQAC
                     IIDAEQECIGILVQLSEKT"
     gene            8159..>8423
                     /locus_tag="E5P34_RS20070"
                     /old_locus_tag="E5P34_20070"
                     /pseudo
     CDS             8159..>8423
                     /locus_tag="E5P34_RS20070"
                     /old_locus_tag="E5P34_20070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611134.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0004803 - transposase activity [Evidence IEA]"
                     /GO_process="GO:0006313 - DNA transposition [Evidence
                     IEA]"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(8612..9625)
                     /locus_tag="E5P34_RS20075"
                     /old_locus_tag="E5P34_20075"
     CDS             complement(8612..9625)
                     /locus_tag="E5P34_RS20075"
                     /old_locus_tag="E5P34_20075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020245959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldose 1-epimerase family protein"
                     /protein_id="WP_000107479.1"
                     /translation="MSTRINLWRALFGEKPRILLENSDFTVTSFRYDSGVEGLKIANS
                     RGHLIILPWMGQMIWDAQFDGHSLTMCNMFHQPKPATEVIETYGCFAFHSGLLANGCP
                     SAEDTHLLHGEIACAAMDEAWLELEGGMLRLTGRYEYVMGFGHHYLAQPTVVLHKSST
                     LFDIKMAVTNLASVDMPLQYMCHMNYAYIPNATFSQNIPDEILRLRESVPSHVNPTAQ
                     WLAFNQRIMQGEASLSTLNQPEFYDPEIVFFADKLDAYTDQPEFRMIAPDGTTFVTRF
                     SSAELNYVTRWILYNGEQQVAAFALPATCRPEGYLAAQRNGTLIQVAPQQTRTFTVTT
                     GIE"
     gene            complement(9637..10953)
                     /gene="fucP"
                     /locus_tag="E5P34_RS20080"
                     /old_locus_tag="E5P34_20080"
     CDS             complement(9637..10953)
                     /gene="fucP"
                     /locus_tag="E5P34_RS20080"
                     /old_locus_tag="E5P34_20080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462691.1"
                     /GO_function="GO:0015150 - fucose transmembrane
                     transporter activity [Evidence IEA]; GO:0015535 -
                     fucose:proton symporter activity [Evidence IEA]"
                     /GO_process="GO:0015756 - fucose transmembrane transport
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose:H+ symporter permease"
                     /protein_id="WP_000998349.1"
                     /translation="MNDKNIIQMPDGYLNKTPLFQFILLSCLFPLWGCAAALNDILIT
                     QFKSVFSLSNFASALVQSAFYGGYFLIAIPASLVIKKTSYKVAILIGLTLYIGGCTLF
                     FPASHMATYTMFLAAIFAIAIGLSFLETAANTYSSMIGPKAYATLRLNISQTFYPIGA
                     ASGILLGKYLVFSEGESLEKQMSGMNAEQIHNFKVLMLENTLEPYKYMIMILVVVMVL
                     FLLTRFPTCKVAQTSHHKRPSAMDTLRYLARNPRFRRGIVAQFLYVGMQVAVWSFTIR
                     LALELGDINERDASNFMVYSFACFFIGKFIANILMTRFNPEKVLILYSVIGALFLAYV
                     ALAPSFSAVYVAVLVSVLFGPCWATIYAGTLDTVDNEHTEMAGAVIVMAIVGAAVVPA
                     IQGYIADMFHSLQLSFLVSMLCFVYVGVYFWRESKVRTALAEVTAS"
     gene            complement(10981..11901)
                     /gene="rbsK"
                     /locus_tag="E5P34_RS20085"
                     /old_locus_tag="E5P34_20085"
     CDS             complement(10981..11901)
                     /gene="rbsK"
                     /locus_tag="E5P34_RS20085"
                     /old_locus_tag="E5P34_20085"
                     /EC_number="2.7.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462692.1"
                     /GO_function="GO:0004747 - ribokinase activity [Evidence
                     IEA]"
                     /GO_process="GO:0006014 - D-ribose metabolic process
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribokinase"
                     /protein_id="WP_000350265.1"
                     /translation="MDIAVIGSNMVDLITYTNQMPKEGETLEAPAFKIGCGGKGANQA
                     VAAAKLNSKVLMLTKVGDDIFADNTIRNLESWGINTTYVEKVPCTSSGVAPIFVNANS
                     SNSILIIKGANKFLSPEDIDRAAEDLKKCKLIVLQLEVQLETVYHAIEFGKKNGIEVL
                     LNPAPALRELDMSYACKCDFFIPNETELEILTGMSVDTYDHIRLAARSLVDKGLNNII
                     VTMSEKGALWMTRDQEVHVPAFKVNAVDTSGAGDAFIGCFSHYYVQSGDVEAALKKAA
                     LFAAFSVTGKGTQSSYPSIEQFNEFLTLNE"
     gene            12205..12987
                     /locus_tag="E5P34_RS20090"
                     /old_locus_tag="E5P34_20090"
     CDS             12205..12987
                     /locus_tag="E5P34_RS20090"
                     /old_locus_tag="E5P34_20090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462693.1"
                     /GO_function="GO:0003700 - DNA-binding transcription
                     factor activity [Evidence IEA]"
                     /GO_process="GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR family transcriptional regulator"
                     /protein_id="WP_001347893.1"
                     /translation="METKQKERIRRLIEILKKTDRIHLKDAARMLEVSVMTIRRDLHQ
                     EYEPLPLTLLGGYIVMVHKPAPSMPVIQDVPRNHRDDLPIAILAAGMVNENDLIFFDN
                     GQEIPLVISMIPDAITFTGICYSHRVFVALNEKPNVTAILCGGTYRARSDAFYDASNS
                     SPLDSLNPRKIFISASGVHDHFGVSWFNPEDLATKRKAMARGLRKILLARHALFDEVA
                     SASLAPLSAFDVLISDRPLPADYVTHCRNASVKIITPDSEDE"
     gene            complement(12989..13215)
                     /locus_tag="E5P34_RS24735"
                     /pseudo
     CDS             complement(12989..13215)
                     /locus_tag="E5P34_RS24735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013364090.1"
                     /note="with IlvB catalyzes the formation of 2-acetolactate
                     from pyruvate, the small subunit is required for full
                     activity and valine sensitivity; E.coli produces 3
                     isoenzymes of acetolactate synthase which differ in
                     specificity to substrates, valine sensitivity and affinity
                     for cofactors; also known as acetolactate synthase small
                     subunit; frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
     gene            complement(13895..14032)
                     /locus_tag="E5P34_RS24740"
     CDS             complement(13895..14032)
                     /locus_tag="E5P34_RS24740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001349745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001371476.1"
                     /translation="MQITEALLSEPGEIRRFVQQAVDHWPHLLAIHFTLHSTRVNIDD
                     Y"
     gene            complement(14382..14948)
                     /locus_tag="E5P34_RS20115"
                     /old_locus_tag="E5P34_20115"
     CDS             complement(14382..14948)
                     /locus_tag="E5P34_RS20115"
                     /old_locus_tag="E5P34_20115"
                     /inference="COORDINATES: protein motif:HMM:NF023154.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inovirus-type Gp2 protein"
                     /protein_id="WP_000287902.1"
                     /translation="MYTESNVKLSCNALWQKCVLATLYRAAATHPEIKLLQFKLIPGQ
                     GLNKAIPSLMADFTGELHRLISEYLQCKRRRDKSVEPTPLYYLWSRETVANDTTPYLM
                     VLLLNNDVWCKSREVVVLRNLIEQAWGKVLGEDNSITHLVVYPEVLSLVFDAANTYNA
                     EPGVLEQTARAYIESHGAVERHLGCSDF"
     gene            complement(14976..15173)
                     /locus_tag="E5P34_RS20120"
                     /old_locus_tag="E5P34_20120"
     CDS             complement(14976..15173)
                     /locus_tag="E5P34_RS20120"
                     /old_locus_tag="E5P34_20120"
                     /inference="COORDINATES: protein motif:HMM:NF023154.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inovirus-type Gp2 protein"
                     /protein_id="WP_000553833.1"
                     /translation="MHQDDFCIVNPGGCIIHFPANGRYILDIHDPDFPEQYQRLLERL
                     DYLTKPGTKASGQRNSGYSGF"
     gene            complement(15420..15845)
                     /locus_tag="E5P34_RS20125"
                     /old_locus_tag="E5P34_20125"
     CDS             complement(15420..15845)
                     /locus_tag="E5P34_RS20125"
                     /old_locus_tag="E5P34_20125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative zinc ribbon protein"
                     /protein_id="WP_021543792.1"
                     /translation="MNGIKTGLGITPGEHIISADSALSRNIRQCFCLSCHGRLILQTD
                     AQGAWFEHDLYALSEQQKAACVVLNPEKSHPYIEDMAMFLSPLPVVLEWHCVMCEQFF
                     HGKKFCEACGTGIYCRAVCTKSVYSYQPDLFQDCGGAST"
     gene            complement(15842..16225)
                     /locus_tag="E5P34_RS20130"
                     /old_locus_tag="E5P34_20130"
     CDS             complement(15842..16225)
                     /locus_tag="E5P34_RS20130"
                     /old_locus_tag="E5P34_20130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000270955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative zinc ribbon protein"
                     /protein_id="WP_000270955.1"
                     /translation="MYAKSFIAFDGNGRLTGARTAQTAPYDRYTCHLCGSALRYHPQY
                     DTERPWFEHTDDGLTEHGQQCPYVRPERREIQLIKRLQQFVPDALPVVRKASRHCRQC
                     HHDYYGERYCTHCHTGHFSEEGVAE"
     gene            complement(16597..17196)
                     /locus_tag="E5P34_RS20135"
                     /old_locus_tag="E5P34_20135"
     CDS             complement(16597..17196)
                     /locus_tag="E5P34_RS20135"
                     /old_locus_tag="E5P34_20135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inovirus-type Gp2 protein"
                     /protein_id="WP_000860849.1"
                     /translation="MKTYNTNPGYEMDPQLLTHFNQHLDSLFGVYSKLLPFRMDFAYR
                     KNTLSYRCACRYAMCAEILRLINEVGEKLVGYAWVMEYTERKGLHIHFVGYLNGQSHR
                     SSYLVSRLMGDIWRRVTGGDGYYHWCRFNKNYPVNINHVIHYSDHKAVNALRYALSYL
                     AKREQKECGIILKCSGLPEKSNRGRPRLGSTLPETYSLV"
     gene            complement(17428..17577)
                     /locus_tag="E5P34_RS20140"
                     /old_locus_tag="E5P34_20140"
     CDS             complement(17428..17577)
                     /locus_tag="E5P34_RS20140"
                     /old_locus_tag="E5P34_20140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000453335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hha/YmoA family nucleoid-associated regulatory
                     protein"
                     /protein_id="WP_072146520.1"
                     /translation="MEKVISHARYKLTPEEMEAFNSAVDHRLAELTMNKLYDRVPASV
                     WKYVT"
     gene            18656..19447
                     /locus_tag="E5P34_RS20155"
                     /old_locus_tag="E5P34_20155"
     CDS             18656..19447
                     /locus_tag="E5P34_RS20155"
                     /old_locus_tag="E5P34_20155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_061157974.1"
                     /translation="MTTRITFNMTSDETLRIVDEYCHTHKLSRSKVIDALLSATAPVL
                     NDINCYYQLAGKLQSRLLNGVYQRDLPHKRNVVSAEKYCLEIWENKLFTKRILEFDSS
                     NGVLYALKHKRHYRRDKMIGRVESRCIKDICEYQMQLSGEKAKYACFIYIERTIYNHD
                     NPSGGTPVKAAVGNAVILLAKDVIYDEYFFDLRQSFFVSVKDLMASDAKGIPETQKYP
                     DVYCWIPLFSINSGVVITPVYKIDPRKPLTVKKPDQITVVCNYRE"
     gene            19832..20038
                     /locus_tag="E5P34_RS20165"
                     /old_locus_tag="E5P34_20165"
     CDS             19832..20038
                     /locus_tag="E5P34_RS20165"
                     /old_locus_tag="E5P34_20165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001564245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="WP_001371489.1"
                     /translation="MTTPVSLMDDQMVDMAFITQLTGLTDKWFYKLIKDGAFPAPIKM
                     GRSSRWLKSEVEAWLQARIAQSRP"
     gene            20132..20734
                     /locus_tag="E5P34_RS20170"
                     /old_locus_tag="E5P34_20170"
     CDS             20132..20734
                     /locus_tag="E5P34_RS20170"
                     /old_locus_tag="E5P34_20170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000813428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_021527306.1"
                     /translation="MKPQYQTRYELLHESYQKWLTGFTRHAVSWGVCHPNIHYFHTLT
                     PGWVSFNGEKPEIAIVPRSLHRLIYGPDKRSSPSLDDDLVVNLCTSEHLLVHHPMLEG
                     ILLSECERLKQHSLANKLISLFRQFGGTELRLKLVWLCWLDLMTGNSLDDWTKNLKHK
                     SEKDLEQWIIARQGQSEPLTNLMDQYVLMAYRTSVDAAHS"
     gene            <21566..>21802
                     /locus_tag="E5P34_RS20180"
                     /old_locus_tag="E5P34_20180"
                     /pseudo
     CDS             <21566..>21802
                     /locus_tag="E5P34_RS20180"
                     /old_locus_tag="E5P34_20180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000952428.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS21 family transposase"
     gene            <21846..22001
                     /locus_tag="E5P34_RS24855"
                     /pseudo
     CDS             <21846..22001
                     /locus_tag="E5P34_RS24855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000544830.1"
                     /GO_function="GO:0005524 - ATP binding [Evidence IEA]"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
     gene            22507..22746
                     /locus_tag="E5P34_RS20190"
                     /old_locus_tag="E5P34_20190"
     CDS             22507..22746
                     /locus_tag="E5P34_RS20190"
                     /old_locus_tag="E5P34_20190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_024187392.1"
                     /translation="MKKKTANMEVIAENTLRNSYEKRLKKNIKFDSFLYAFWERGDDE
                     LLHVQRRMHPEAPESSRKAERLRIKPGDSNIKVMY"
     gene            23142..24290
                     /locus_tag="E5P34_RS20195"
                     /old_locus_tag="E5P34_20195"
     CDS             23142..24290
                     /locus_tag="E5P34_RS20195"
                     /old_locus_tag="E5P34_20195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001388349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001336040.1"
                     /translation="MGKELDDICTSCPYIDAVKRHKQQVGAIEEYTKWLKKEPRASYF
                     FLFQLYTRIHNTFFSQKQQLPFTPGGTHCPEPDVTLRDLTLSPGYHSDYAPQPIPEMD
                     SSAVVPPTNENTSPPEDTPDNTPAGGNTGQAEKTRNAGLTPIPEKRSGMPPEHLRFAT
                     GFPPQPKIAGPKGKPMRTVHPDKIYREIIWFCSGYLRKSGPEATRTIINSIFCEWASI
                     FNDYSSPFSWVDSRDSEQCDWLWNAMQVRCVGTPLNPLTPEQKYWFACATFDNWEGWN
                     EQQVQFLLKSNPRRNRAKFTISPFPALRVKQHKAVLLDELKSAREQQKRRDERADGSV
                     PLKLSGKIHKQLESIARSRGVPPKKMLNEMIEQAHLDFVANEQHKTRS"
     gene            25152..26270
                     /locus_tag="E5P34_RS20205"
                     /old_locus_tag="E5P34_20205"
     CDS             25152..26270
                     /locus_tag="E5P34_RS20205"
                     /old_locus_tag="E5P34_20205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001333638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000375615.1"
                     /translation="MDRLYELGKRFDRLLYMSIVVVIFSFLTCSLLITLSSQNLFALI
                     TSYKDIKQQIETKRRKIEFIETQISAVNESVSDILDFRKRINKSEMDTVRYKSEIENE
                     FFSIRKKMINEGLREIDLDEVSSINELKYFMYDVLKKEIEKSSVGYIVRDKIESALPE
                     KDKIANYHDAMNWLDGKIKDESNSKIEIVNIESTLIIPFKIGDMASSVSLISIAKIAS
                     YAMPVFMVFWLGSLFVTRRIEMMNLMKTKDISLIYPHILNIFSVDTTKSQDFNLYLLG
                     DEKIRKQINASIFLIKAIKGFLFISLALAMCGPLYYGEFIYLVNYNTSSLPLFIVSFS
                     CMLINIIQAVGYVYFESISSNVIYRIKNGVIDRYELNF"
     gene            26361..26708
                     /locus_tag="E5P34_RS20210"
                     /old_locus_tag="E5P34_20210"
     CDS             26361..26708
                     /locus_tag="E5P34_RS20210"
                     /old_locus_tag="E5P34_20210"
                     /EC_number="2.3.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025054.4"
                     /GO_function="GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="WP_000569129.1"
                     /translation="MIEFLTHGFSPQIDAQLRWEEFPPCVNSIYAREILCLYVDEPYH
                     GKGFAQALMQKCFAEFEAKGSDPVWLGVWEYNPRAISFYRKLGFTEVGEHICQVGSDP
                     QRDIIMKRSTYAS"
CONTIG      join(SROK01000066.1:1..26830)
//
Feature
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