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NCBI Reference Sequence: NZ_SROK01000066.1
FASTA Graphics
LOCUS NZ_SROK01000066 26830 bp DNA linear CON 03-JUL-2024 DEFINITION Escherichia coli strain KCJK7048 NODE_66_length_26830_cov_16.186196, whole genome shotgun sequence. ACCESSION NZ_SROK01000066 NZ_SROK01000000 VERSION NZ_SROK01000066.1 DBLINK BioProject: PRJNA224116 BioSample: SAMN11334868 Assembly: GCF_004768285.1 KEYWORDS WGS; RefSeq. SOURCE Escherichia coli ORGANISM Escherichia coli Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia. REFERENCE 1 (bases 1 to 26830) AUTHORS Teng,L. TITLE ESBL E. coli from beef cattle JOURNAL Unpublished REFERENCE 2 (bases 1 to 26830) AUTHORS Teng,L. TITLE Direct Submission JOURNAL Submitted (03-APR-2019) Animal Sciences, University of Florida, 2055 MOWRY ROAD, Emerging Pathogens Institute, Room 200, Gainesville, FL 32608, USA COMMENT REFSEQ INFORMATION: The reference sequence is identical to SROK01000066.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: SPAdes v. 3 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 72x Sequencing Technology :: Illumina MiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_004768285.1-RS_2024_07_03 Annotation Date :: 07/03/2024 02:10:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,876 CDSs (total) :: 4,763 Genes (coding) :: 4,607 CDSs (with protein) :: 4,607 Genes (RNA) :: 113 rRNAs :: 8, 10, 4 (5S, 16S, 23S) complete rRNAs :: 5 (5S) partial rRNAs :: 3, 10, 4 (5S, 16S, 23S) tRNAs :: 82 ncRNAs :: 9 Pseudo Genes (total) :: 156 CDSs (without protein) :: 156 Pseudo Genes (ambiguous residues) :: 0 of 156 Pseudo Genes (frameshifted) :: 39 of 156 Pseudo Genes (incomplete) :: 120 of 156 Pseudo Genes (internal stop) :: 25 of 156 Pseudo Genes (multiple problems) :: 24 of 156 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..26830 /organism="Escherichia coli" /mol_type="genomic DNA" /submitter_seqid="NODE_66_length_26830_cov_16.186196" /strain="KCJK7048" /isolation_source="feces" /host="beef cattle" /db_xref="taxon:562" /geo_loc_name="USA: Alachua, FL" /lat_lon="29.74 N 82.15 W" /collection_date="2016" /collected_by="University of Florida" gene complement(<170..1032) /gene="istA" /locus_tag="E5P34_RS20035" /old_locus_tag="E5P34_20035" /pseudo CDS complement(<170..1032) /gene="istA" /locus_tag="E5P34_RS20035" /old_locus_tag="E5P34_20035" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_000174402.1" /GO_function="GO:0004803 - transposase activity [Evidence IEA]" /note="frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="IS21 family transposase" gene complement(1440..2687) /gene="pgtA" /locus_tag="E5P34_RS20045" /old_locus_tag="E5P34_20045" CDS complement(1440..2687) /gene="pgtA" /locus_tag="E5P34_RS20045" /old_locus_tag="E5P34_20045" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001765251.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="two-component system response regulator PgtA" /protein_id="WP_001298249.1" /translation="MLSSEYSILLIDDDADVLDAYTQLLEQSGYRVFACNNPFEAQAW IQPDWPGIVLSDVCMPGCSGIDLMMLFHQDDQQLPILLITGHGDVPMAVDAVKKGAWD FLQKPVDPGKLLSLVEEALRQRQSIIARRQYCQQTLQVELIGRSEWINQYRRRLQQLS ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAPQLNDFIALAQGGT LVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYYCFAMT QIACLPLTQRPDDIEPLFRHYLCKACQRLNHPVPEVGKEMLKEMMRRMWPNNVRELAN AAELFTVGILPLAETANPLMHVGTPAPLDRRVEDAERQIITEALNIHQGRINEVAEYL QIPRKKLYLRMKKYGLSKEHYKN" gene complement(2677..4686) /gene="pgtB" /locus_tag="E5P34_RS20050" /old_locus_tag="E5P34_20050" CDS complement(2677..4686) /gene="pgtB" /locus_tag="E5P34_RS20050" /old_locus_tag="E5P34_20050" /EC_number="2.7.13.3" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_000790444.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="two-component system sensor histidine kinase PgtB" /protein_id="WP_000790444.1" /translation="MKNITLWQRLRQVSISTSLRCAFLMGALLTLIVSSVSLYSWHEQ SSQIRYSLDEYFPRIHSAFLIEGNLNLVVDQLNEFLQAPNTTVRLQLRTQIIQHLDTI ERLSRGLSSRERQQLTVILRDSRSLLSELDRALYNMFLLREKVSELSARIDWLHDDFT TELNSLVQDFTWQQGTLLDQIASRQGDTAQYLKRSREVQNEQQQVYTLARIENQIVDD LRDRLNELKSGRDDDTQVETHLRYFENLKKTADENIRMLDDWPGTITLRQTIDELLDM GIVKNKMPDTMREYVAAQKALEDASRTREATLGRFRTLLEAQLGSTHQQMQMFNQRME QIVRVSGGLILVATALALLLAWVFNHYFIRSRLVKRFTLLNQAVVQIGLGGTETTIPV YGNDELGRIAGLLRHTLGQLNVQKQQLEQEITDRKVIEADLRATQDELIQTAKLAVVG QTMTTLAHEINQPLNALSMYLFTARRAIEQTQKEQASMMLGKAEGVISRIDAIIRSLR QFTRRAELETSLHAVDLAQMFSAAWELLAMRHRSLQATLVLPQGTATVSGDEVRTQQV LVNVLANALDVCGQGAVITVNWQMQGKTLNVFIGDNGPGWPEALLPSLLKPFTTSKEV GLGIGLSICVSLMEQMKGELRLASTMTRNACVVLQFRLTDVEDAK" gene complement(4683..5900) /gene="pgtC" /locus_tag="E5P34_RS20055" /old_locus_tag="E5P34_20055" CDS complement(4683..5900) /gene="pgtC" /locus_tag="E5P34_RS20055" /old_locus_tag="E5P34_20055" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001317576.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="phosphoglycerate transport regulator PgtC" /protein_id="WP_085960558.1" /translation="MILLLLLMDTGAVRAQRNELVMATTFSPGATAWIIQRWQTEPES VMIRTLNRTSASLEQLLDTANVENVDLILTSSPMLLQHLQEHQKLAPFDDAPAESQNL VPESIRATSVAVAISGFGLLINRPALSVKHLPAPADWDDLALPIYQDALLMSSPSRSD TNHLMVESLLQQKGWVKGWETLLTSAGNLVTISSRSFGVADKIKSGLGVAGPVIDNYA NLLLNDPHLSFTYFPRSAVSPTYVAILKKSPHADAARRFIHYLLSPKGQRILADANTG KYPVTPLAADNPRATQQQLLMNQPPLNYHLILKRQRLVQRLFDTAISFRLAQLKDAWR ALHSTEARLKKPLPEIRALLTQVPVAAASSEDPVWLAQFDNKSFTEQQMMKWQLWFLN NQRLAIKKLEELK" gene 6299..7663 /gene="pgtP" /locus_tag="E5P34_RS20060" /old_locus_tag="E5P34_20060" CDS 6299..7663 /gene="pgtP" /locus_tag="E5P34_RS20060" /old_locus_tag="E5P34_20060" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_019842475.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="phosphoglycerate transporter PgtP" /protein_id="WP_000948757.1" /translation="MLSIFKTGQAADSVPAEKIQVTYRRYRMQALLSVFLGYLAYYIV RNNFTLSTPYLKEQLDLSATQIGVLSSCMLIAYGISKGVMSSLADKASPKVFMACGLV LCAIVNVGLGFSTAFWIFAVLVILNGLFQGMGVGPSFITIANWFPRRERGRVGAFWNI SHNVGGGIVAPIVGAAFALLGSEHWQSASYIVPACVAIVFAVIVLILGKGSPRQEGLP SLEEMMPEEKVVLNTRQTVKAPENMSAFQIFCTYVLRNKNAWYVSLVDVFVYMVRFGM ISWLPIYLLTVKHFSKEQMSVAFLFFEWAAIPSTLLAGWLSDKLFKGRRMPLAMICMA LIFICLIGYWKSESLFMVTIFAAIVGCLIYVPQFLASVQTMEIVPSFAVGSAVGLRGF MSYIFGASLGTSLFGIMVDHIGWHGGFYLLGCGIICCIIFCWLSHRGAIELERHRAAY IKEH" gene 7706..8071 /locus_tag="E5P34_RS20065" /old_locus_tag="E5P34_20065" CDS 7706..8071 /locus_tag="E5P34_RS20065" /old_locus_tag="E5P34_20065" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001536555.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_000639468.1" /translation="MIYKISGNQRLIWKFYKTDDNKWRWYCHEKNGYLISQSDNAYNS QLLCIKNAKKQGYSDESVLPLFLHISYIQEKGWKWYQYYDCGYIVKQASVFFPTYQAC IIDAEQECIGILVQLSEKT" gene 8159..>8423 /locus_tag="E5P34_RS20070" /old_locus_tag="E5P34_20070" /pseudo CDS 8159..>8423 /locus_tag="E5P34_RS20070" /old_locus_tag="E5P34_20070" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_076611134.1" /GO_function="GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]" /GO_process="GO:0006313 - DNA transposition [Evidence IEA]" /note="frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="transposase" gene complement(8612..9625) /locus_tag="E5P34_RS20075" /old_locus_tag="E5P34_20075" CDS complement(8612..9625) /locus_tag="E5P34_RS20075" /old_locus_tag="E5P34_20075" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_020245959.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="aldose 1-epimerase family protein" /protein_id="WP_000107479.1" /translation="MSTRINLWRALFGEKPRILLENSDFTVTSFRYDSGVEGLKIANS RGHLIILPWMGQMIWDAQFDGHSLTMCNMFHQPKPATEVIETYGCFAFHSGLLANGCP SAEDTHLLHGEIACAAMDEAWLELEGGMLRLTGRYEYVMGFGHHYLAQPTVVLHKSST LFDIKMAVTNLASVDMPLQYMCHMNYAYIPNATFSQNIPDEILRLRESVPSHVNPTAQ WLAFNQRIMQGEASLSTLNQPEFYDPEIVFFADKLDAYTDQPEFRMIAPDGTTFVTRF SSAELNYVTRWILYNGEQQVAAFALPATCRPEGYLAAQRNGTLIQVAPQQTRTFTVTT GIE" gene complement(9637..10953) /gene="fucP" /locus_tag="E5P34_RS20080" /old_locus_tag="E5P34_20080" CDS complement(9637..10953) /gene="fucP" /locus_tag="E5P34_RS20080" /old_locus_tag="E5P34_20080" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_462691.1" /GO_function="GO:0015150 - fucose transmembrane transporter activity [Evidence IEA]; GO:0015535 - fucose:proton symporter activity [Evidence IEA]" /GO_process="GO:0015756 - fucose transmembrane transport [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="L-fucose:H+ symporter permease" /protein_id="WP_000998349.1" /translation="MNDKNIIQMPDGYLNKTPLFQFILLSCLFPLWGCAAALNDILIT QFKSVFSLSNFASALVQSAFYGGYFLIAIPASLVIKKTSYKVAILIGLTLYIGGCTLF FPASHMATYTMFLAAIFAIAIGLSFLETAANTYSSMIGPKAYATLRLNISQTFYPIGA ASGILLGKYLVFSEGESLEKQMSGMNAEQIHNFKVLMLENTLEPYKYMIMILVVVMVL FLLTRFPTCKVAQTSHHKRPSAMDTLRYLARNPRFRRGIVAQFLYVGMQVAVWSFTIR LALELGDINERDASNFMVYSFACFFIGKFIANILMTRFNPEKVLILYSVIGALFLAYV ALAPSFSAVYVAVLVSVLFGPCWATIYAGTLDTVDNEHTEMAGAVIVMAIVGAAVVPA IQGYIADMFHSLQLSFLVSMLCFVYVGVYFWRESKVRTALAEVTAS" gene complement(10981..11901) /gene="rbsK" /locus_tag="E5P34_RS20085" /old_locus_tag="E5P34_20085" CDS complement(10981..11901) /gene="rbsK" /locus_tag="E5P34_RS20085" /old_locus_tag="E5P34_20085" /EC_number="2.7.1.15" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_462692.1" /GO_function="GO:0004747 - ribokinase activity [Evidence IEA]" /GO_process="GO:0006014 - D-ribose metabolic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="ribokinase" /protein_id="WP_000350265.1" /translation="MDIAVIGSNMVDLITYTNQMPKEGETLEAPAFKIGCGGKGANQA VAAAKLNSKVLMLTKVGDDIFADNTIRNLESWGINTTYVEKVPCTSSGVAPIFVNANS SNSILIIKGANKFLSPEDIDRAAEDLKKCKLIVLQLEVQLETVYHAIEFGKKNGIEVL LNPAPALRELDMSYACKCDFFIPNETELEILTGMSVDTYDHIRLAARSLVDKGLNNII VTMSEKGALWMTRDQEVHVPAFKVNAVDTSGAGDAFIGCFSHYYVQSGDVEAALKKAA LFAAFSVTGKGTQSSYPSIEQFNEFLTLNE" gene 12205..12987 /locus_tag="E5P34_RS20090" /old_locus_tag="E5P34_20090" CDS 12205..12987 /locus_tag="E5P34_RS20090" /old_locus_tag="E5P34_20090" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_462693.1" /GO_function="GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]" /GO_process="GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DeoR family transcriptional regulator" /protein_id="WP_001347893.1" /translation="METKQKERIRRLIEILKKTDRIHLKDAARMLEVSVMTIRRDLHQ EYEPLPLTLLGGYIVMVHKPAPSMPVIQDVPRNHRDDLPIAILAAGMVNENDLIFFDN GQEIPLVISMIPDAITFTGICYSHRVFVALNEKPNVTAILCGGTYRARSDAFYDASNS SPLDSLNPRKIFISASGVHDHFGVSWFNPEDLATKRKAMARGLRKILLARHALFDEVA SASLAPLSAFDVLISDRPLPADYVTHCRNASVKIITPDSEDE" gene complement(12989..13215) /locus_tag="E5P34_RS24735" /pseudo CDS complement(12989..13215) /locus_tag="E5P34_RS24735" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_013364090.1" /note="with IlvB catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase small subunit; frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="acetolactate synthase small subunit" gene complement(13895..14032) /locus_tag="E5P34_RS24740" CDS complement(13895..14032) /locus_tag="E5P34_RS24740" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001349745.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_001371476.1" /translation="MQITEALLSEPGEIRRFVQQAVDHWPHLLAIHFTLHSTRVNIDD Y" gene complement(14382..14948) /locus_tag="E5P34_RS20115" /old_locus_tag="E5P34_20115" CDS complement(14382..14948) /locus_tag="E5P34_RS20115" /old_locus_tag="E5P34_20115" /inference="COORDINATES: protein motif:HMM:NF023154.4" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="inovirus-type Gp2 protein" /protein_id="WP_000287902.1" /translation="MYTESNVKLSCNALWQKCVLATLYRAAATHPEIKLLQFKLIPGQ GLNKAIPSLMADFTGELHRLISEYLQCKRRRDKSVEPTPLYYLWSRETVANDTTPYLM VLLLNNDVWCKSREVVVLRNLIEQAWGKVLGEDNSITHLVVYPEVLSLVFDAANTYNA EPGVLEQTARAYIESHGAVERHLGCSDF" gene complement(14976..15173) /locus_tag="E5P34_RS20120" /old_locus_tag="E5P34_20120" CDS complement(14976..15173) /locus_tag="E5P34_RS20120" /old_locus_tag="E5P34_20120" /inference="COORDINATES: protein motif:HMM:NF023154.4" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="inovirus-type Gp2 protein" /protein_id="WP_000553833.1" /translation="MHQDDFCIVNPGGCIIHFPANGRYILDIHDPDFPEQYQRLLERL DYLTKPGTKASGQRNSGYSGF" gene complement(15420..15845) /locus_tag="E5P34_RS20125" /old_locus_tag="E5P34_20125" CDS complement(15420..15845) /locus_tag="E5P34_RS20125" /old_locus_tag="E5P34_20125" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_708754.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="putative zinc ribbon protein" /protein_id="WP_021543792.1" /translation="MNGIKTGLGITPGEHIISADSALSRNIRQCFCLSCHGRLILQTD AQGAWFEHDLYALSEQQKAACVVLNPEKSHPYIEDMAMFLSPLPVVLEWHCVMCEQFF HGKKFCEACGTGIYCRAVCTKSVYSYQPDLFQDCGGAST" gene complement(15842..16225) /locus_tag="E5P34_RS20130" /old_locus_tag="E5P34_20130" CDS complement(15842..16225) /locus_tag="E5P34_RS20130" /old_locus_tag="E5P34_20130" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_000270955.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="putative zinc ribbon protein" /protein_id="WP_000270955.1" /translation="MYAKSFIAFDGNGRLTGARTAQTAPYDRYTCHLCGSALRYHPQY DTERPWFEHTDDGLTEHGQQCPYVRPERREIQLIKRLQQFVPDALPVVRKASRHCRQC HHDYYGERYCTHCHTGHFSEEGVAE" gene complement(16597..17196) /locus_tag="E5P34_RS20135" /old_locus_tag="E5P34_20135" CDS complement(16597..17196) /locus_tag="E5P34_RS20135" /old_locus_tag="E5P34_20135" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_708756.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="inovirus-type Gp2 protein" /protein_id="WP_000860849.1" /translation="MKTYNTNPGYEMDPQLLTHFNQHLDSLFGVYSKLLPFRMDFAYR KNTLSYRCACRYAMCAEILRLINEVGEKLVGYAWVMEYTERKGLHIHFVGYLNGQSHR SSYLVSRLMGDIWRRVTGGDGYYHWCRFNKNYPVNINHVIHYSDHKAVNALRYALSYL AKREQKECGIILKCSGLPEKSNRGRPRLGSTLPETYSLV" gene complement(17428..17577) /locus_tag="E5P34_RS20140" /old_locus_tag="E5P34_20140" CDS complement(17428..17577) /locus_tag="E5P34_RS20140" /old_locus_tag="E5P34_20140" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_000453335.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="Hha/YmoA family nucleoid-associated regulatory protein" /protein_id="WP_072146520.1" /translation="MEKVISHARYKLTPEEMEAFNSAVDHRLAELTMNKLYDRVPASV WKYVT" gene 18656..19447 /locus_tag="E5P34_RS20155" /old_locus_tag="E5P34_20155" CDS 18656..19447 /locus_tag="E5P34_RS20155" /old_locus_tag="E5P34_20155" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_708760.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_061157974.1" /translation="MTTRITFNMTSDETLRIVDEYCHTHKLSRSKVIDALLSATAPVL NDINCYYQLAGKLQSRLLNGVYQRDLPHKRNVVSAEKYCLEIWENKLFTKRILEFDSS NGVLYALKHKRHYRRDKMIGRVESRCIKDICEYQMQLSGEKAKYACFIYIERTIYNHD NPSGGTPVKAAVGNAVILLAKDVIYDEYFFDLRQSFFVSVKDLMASDAKGIPETQKYP DVYCWIPLFSINSGVVITPVYKIDPRKPLTVKKPDQITVVCNYRE" gene 19832..20038 /locus_tag="E5P34_RS20165" /old_locus_tag="E5P34_20165" CDS 19832..20038 /locus_tag="E5P34_RS20165" /old_locus_tag="E5P34_20165" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001564245.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="helix-turn-helix transcriptional regulator" /protein_id="WP_001371489.1" /translation="MTTPVSLMDDQMVDMAFITQLTGLTDKWFYKLIKDGAFPAPIKM GRSSRWLKSEVEAWLQARIAQSRP" gene 20132..20734 /locus_tag="E5P34_RS20170" /old_locus_tag="E5P34_20170" CDS 20132..20734 /locus_tag="E5P34_RS20170" /old_locus_tag="E5P34_20170" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_000813428.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_021527306.1" /translation="MKPQYQTRYELLHESYQKWLTGFTRHAVSWGVCHPNIHYFHTLT PGWVSFNGEKPEIAIVPRSLHRLIYGPDKRSSPSLDDDLVVNLCTSEHLLVHHPMLEG ILLSECERLKQHSLANKLISLFRQFGGTELRLKLVWLCWLDLMTGNSLDDWTKNLKHK SEKDLEQWIIARQGQSEPLTNLMDQYVLMAYRTSVDAAHS" gene <21566..>21802 /locus_tag="E5P34_RS20180" /old_locus_tag="E5P34_20180" /pseudo CDS <21566..>21802 /locus_tag="E5P34_RS20180" /old_locus_tag="E5P34_20180" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_000952428.1" /note="incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="IS21 family transposase" gene <21846..22001 /locus_tag="E5P34_RS24855" /pseudo CDS <21846..22001 /locus_tag="E5P34_RS24855" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_000544830.1" /GO_function="GO:0005524 - ATP binding [Evidence IEA]" /note="internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="ATP-binding protein" gene 22507..22746 /locus_tag="E5P34_RS20190" /old_locus_tag="E5P34_20190" CDS 22507..22746 /locus_tag="E5P34_RS20190" /old_locus_tag="E5P34_20190" /inference="COORDINATES: ab initio prediction:GeneMarkS-2+" /note="Derived by automated computational analysis using gene prediction method: GeneMarkS-2+." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_024187392.1" /translation="MKKKTANMEVIAENTLRNSYEKRLKKNIKFDSFLYAFWERGDDE LLHVQRRMHPEAPESSRKAERLRIKPGDSNIKVMY" gene 23142..24290 /locus_tag="E5P34_RS20195" /old_locus_tag="E5P34_20195" CDS 23142..24290 /locus_tag="E5P34_RS20195" /old_locus_tag="E5P34_20195" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001388349.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_001336040.1" /translation="MGKELDDICTSCPYIDAVKRHKQQVGAIEEYTKWLKKEPRASYF FLFQLYTRIHNTFFSQKQQLPFTPGGTHCPEPDVTLRDLTLSPGYHSDYAPQPIPEMD SSAVVPPTNENTSPPEDTPDNTPAGGNTGQAEKTRNAGLTPIPEKRSGMPPEHLRFAT GFPPQPKIAGPKGKPMRTVHPDKIYREIIWFCSGYLRKSGPEATRTIINSIFCEWASI FNDYSSPFSWVDSRDSEQCDWLWNAMQVRCVGTPLNPLTPEQKYWFACATFDNWEGWN EQQVQFLLKSNPRRNRAKFTISPFPALRVKQHKAVLLDELKSAREQQKRRDERADGSV PLKLSGKIHKQLESIARSRGVPPKKMLNEMIEQAHLDFVANEQHKTRS" gene 25152..26270 /locus_tag="E5P34_RS20205" /old_locus_tag="E5P34_20205" CDS 25152..26270 /locus_tag="E5P34_RS20205" /old_locus_tag="E5P34_20205" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001333638.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_000375615.1" /translation="MDRLYELGKRFDRLLYMSIVVVIFSFLTCSLLITLSSQNLFALI TSYKDIKQQIETKRRKIEFIETQISAVNESVSDILDFRKRINKSEMDTVRYKSEIENE FFSIRKKMINEGLREIDLDEVSSINELKYFMYDVLKKEIEKSSVGYIVRDKIESALPE KDKIANYHDAMNWLDGKIKDESNSKIEIVNIESTLIIPFKIGDMASSVSLISIAKIAS YAMPVFMVFWLGSLFVTRRIEMMNLMKTKDISLIYPHILNIFSVDTTKSQDFNLYLLG DEKIRKQINASIFLIKAIKGFLFISLALAMCGPLYYGEFIYLVNYNTSSLPLFIVSFS CMLINIIQAVGYVYFESISSNVIYRIKNGVIDRYELNF" gene 26361..26708 /locus_tag="E5P34_RS20210" /old_locus_tag="E5P34_20210" CDS 26361..26708 /locus_tag="E5P34_RS20210" /old_locus_tag="E5P34_20210" /EC_number="2.3.-.-" /inference="COORDINATES: protein motif:HMM:NF025054.4" /GO_function="GO:0008080 - N-acetyltransferase activity [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="GNAT family N-acetyltransferase" /protein_id="WP_000569129.1" /translation="MIEFLTHGFSPQIDAQLRWEEFPPCVNSIYAREILCLYVDEPYH GKGFAQALMQKCFAEFEAKGSDPVWLGVWEYNPRAISFYRKLGFTEVGEHICQVGSDP QRDIIMKRSTYAS" CONTIG join(SROK01000066.1:1..26830) //
Whole sequence (abbreviated view) Selected region from: to:
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