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NCBI Reference Sequence: NZ_SRMZ01000036.1
FASTA Graphics
LOCUS NZ_SRMZ01000036 32903 bp DNA linear CON 19-JUN-2024 DEFINITION Escherichia coli strain BX1S20 NODE_36_length_32903_cov_161.913, whole genome shotgun sequence. ACCESSION NZ_SRMZ01000036 NZ_SRMZ01000000 VERSION NZ_SRMZ01000036.1 DBLINK BioProject: PRJNA224116 BioSample: SAMN11333193 Assembly: GCF_004767645.1 KEYWORDS WGS; RefSeq. SOURCE Escherichia coli ORGANISM Escherichia coli Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia. REFERENCE 1 (bases 1 to 32903) AUTHORS Xu,A., Liu,Y., Niemira,B., Scullen,O., Boyd,G., Ream,A. and Sommers,C. TITLE Draft Genome Sequence Of Multi-Drug Resistant Escherichia coli Isolated From Retail Fresh Herb Products JOURNAL Unpublished REFERENCE 2 (bases 1 to 32903) AUTHORS Xu,A., Liu,Y., Niemira,B., Scullen,O., Boyd,G., Ream,A. and Sommers,C. TITLE Direct Submission JOURNAL Submitted (03-APR-2019) ARS, USDA, 600 East Mermaid Lane, Wyndmoor, PA 19038, USA COMMENT REFSEQ INFORMATION: The reference sequence is identical to SRMZ01000036.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: SPAdes v. 3.9.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 302x Sequencing Technology :: Illumina MiniSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_004767645.1-RS_2024_06_19 Annotation Date :: 06/19/2024 16:02:57 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,686 CDSs (total) :: 4,589 Genes (coding) :: 4,401 CDSs (with protein) :: 4,401 Genes (RNA) :: 97 rRNAs :: 4, 3, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) partial rRNAs :: 3, 2 (5S, 16S) tRNAs :: 79 ncRNAs :: 10 Pseudo Genes (total) :: 188 CDSs (without protein) :: 188 Pseudo Genes (ambiguous residues) :: 0 of 188 Pseudo Genes (frameshifted) :: 65 of 188 Pseudo Genes (incomplete) :: 115 of 188 Pseudo Genes (internal stop) :: 35 of 188 Pseudo Genes (multiple problems) :: 24 of 188 CRISPR Arrays :: 6 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..32903 /organism="Escherichia coli" /mol_type="genomic DNA" /submitter_seqid="NODE_36_length_32903_cov_161.913" /strain="BX1S20" /isolation_source="Retail fresh basil" /db_xref="taxon:562" /geo_loc_name="USA: Philadelphia" /lat_lon="39.95 N 75.16 W" /collection_date="2019-03-29" /collected_by="Christopher Sommers" gene <1..90 /gene="ldrD" /locus_tag="E5S39_RS20925" /old_locus_tag="E5S39_20925" CDS <1..90 /gene="ldrD" /locus_tag="E5S39_RS20925" /old_locus_tag="E5S39_20925" /inference="COORDINATES: similar to AA sequence:RefSeq:YP_026227.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="type I toxin-antitoxin system toxic polypeptide LdrD" /protein_id="WP_001500537.1" /translation="GMAFWHDLAAPVIAGILASMIVNWLNKRK" gene complement(177..1856) /gene="bcsG" /locus_tag="E5S39_RS20930" /old_locus_tag="E5S39_20930" CDS complement(177..1856) /gene="bcsG" /locus_tag="E5S39_RS20930" /old_locus_tag="E5S39_20930" /EC_number="2.7.8.-" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_312445.1" /GO_component="GO:0005575 - cellular_component [Evidence IEA]" /GO_function="GO:0003674 - molecular_function [Evidence IEA]" /GO_process="GO:0030244 - cellulose biosynthetic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="cellulose biosynthesis protein BcsG" /protein_id="WP_000191596.1" /translation="MTQFTQNTAMPSSLWQYWRGLSGWNFYFLVKFGLLWAGYLNFHP LLNLVFAAFLLMPIPRYSLHRLRHWIALPIGFALFWHDTWLPGPESIMSQGSQVAGFS TDYLIDLVTRFINWQMIGAIFVLLVAWLFLSQWIRITVFVVAILLWLNVLTLAGPSFS LWPAGQPTTTVTTTGGNAAATVAATGGAPVVGDMPAQTAPPTTANLNAWLNNFYNAEA KRKSTFPSSLPADAQPFELLVINICSLSWSDIEAAGLMSHPLWSHFDIEFKNFNSATS YSGPAAIRLLRASCGQTSHTNLYQPANNDCYLFDNLSKLGFTQHLMMGHNGQFGGFLK EVRENGGMQTELMDQTNLPVILLGFDGSPVYDDTAVLNRWLDVTEKDKNSRSATFYNT LPLHDGNHYPGVSKTADYKARAQKFFDELDAFFTELEKSGRKVMVVVVPEHGGALKGD RMQVSGLRDIPSPSITDVPVGVKFFGMKAPHQGAPIVIDQPSSFLAISDLVVRVLDGK IFTEDNVDWKKLTSGLPQTAPVSENSNAVVIQYQDKPYVRLNGGDWVPYPQ" gene complement(1853..2044) /gene="bcsF" /locus_tag="E5S39_RS20935" /old_locus_tag="E5S39_20935" CDS complement(1853..2044) /gene="bcsF" /locus_tag="E5S39_RS20935" /old_locus_tag="E5S39_20935" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_417994.2" /GO_component="GO:0005575 - cellular_component [Evidence IEA]" /GO_function="GO:0003674 - molecular_function [Evidence IEA]" /GO_process="GO:0052324 - plant-type cell wall cellulose biosynthetic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="cellulose biosynthesis protein BcsF" /protein_id="WP_000988308.1" /translation="MMTISDIIEIIVVCALIFFPLGYLARHSLRRIRDTLRLFFAKPR YVKPAGTLRRTEKARATKK" gene complement(2041..3612) /gene="bcsE" /locus_tag="E5S39_RS20940" /old_locus_tag="E5S39_20940" CDS complement(2041..3612) /gene="bcsE" /locus_tag="E5S39_RS20940" /old_locus_tag="E5S39_20940" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_417993.1" /GO_function="GO:0035438 - cyclic-di-GMP binding [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="cellulose biosynthesis c-di-GMP-binding protein BcsE" /protein_id="WP_001204931.1" /translation="MRDIVDPVFSIGISSLWDELRHMPAGGVWWFNVDRHEDAISLAN QTIASQAETAHVAVISMDSDPAKIFQLDDSQGPEKIKLFSMLNHEKGLYYLTRDLQCS IDPHNYLFILVCANNAWQNIPAERLRSWLDKMNKWSRLNHCSLLVINPGNNNDKQFSL LLEEYRSLFGLASLRFQGDQHLLDIAFWCNEKGVSARQQLSVQQQNGIWTLVQSEEAE IQPRSDEKRILSNVAVLEGAPPLSEHWQLFNNNEVLFNEARTAQAATVVFSLQQNAQI EPLARSIHTLRRQRGSAMKILVRENTASLRATDERLLLACGANMVIPWNAPLSRCLTM IESVQGQKFSRYVPEDITTLLSMTQPLKLRGFQKWDVFCNAVNNMMNNPLLPAHGKGV LVALRPVPGIRVEQALTLCRPNRTGDIMTIGGNRLVLFLSFCRINDLDTALNHIFPLP TGDIFSNRMVWFEDDQISAELVQMRLLAPEQWGMPLPLTQSSKPVINAEHDGRHWRRI PEPMRLLDDAVERSS" gene 3885..4073 /gene="bcsR" /locus_tag="E5S39_RS20945" /old_locus_tag="E5S39_20945" CDS 3885..4073 /gene="bcsR" /locus_tag="E5S39_RS20945" /old_locus_tag="E5S39_20945" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_417992.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="cellulose biosynthesis protein BcsR" /protein_id="WP_001063318.1" /translation="MNNNEPDTLPDPAIGYIFQNDIVALKQAFSLPDIDYADISQREQ LAAALKRWPLLAEFAQQK" gene 4085..4837 /gene="bcsQ" /locus_tag="E5S39_RS20950" /old_locus_tag="E5S39_20950" CDS 4085..4837 /gene="bcsQ" /locus_tag="E5S39_RS20950" /old_locus_tag="E5S39_20950" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_709309.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="cellulose biosynthesis protein BcsQ" /protein_id="WP_000279530.1" /translation="MAVLGLQGVRGGVGTTTITAALAWSLQMLGENVLVVDACPDNLL RLSFNVDFTHRQGWARAMLDGQDWRDAGLRYTSQLDLLPFGQLSIEEQENPQHWQTRL SDICSGLQQLKASGRYQWILIDLPRDASQITHQLLSLCDHSLAIVNVDANCHIRLHQQ ALPDGAHILINNFRIGSQVQDDIYQLWLQSQRRLLPMLIHRDEAMAECLAAKQPVGEY RSDALAAEEILTLANWCLLNYSGLKTPVGSAS" gene 4834..7452 /gene="bcsA" /locus_tag="E5S39_RS20955" /old_locus_tag="E5S39_20955" CDS 4834..7452 /gene="bcsA" /locus_tag="E5S39_RS20955" /old_locus_tag="E5S39_20955" /EC_number="2.4.1.12" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_417990.4" /GO_component="GO:0016020 - membrane [Evidence IEA]" /GO_function="GO:0016760 - cellulose synthase (UDP-forming) activity [Evidence IEA]; GO:0035438 - cyclic-di-GMP binding [Evidence IEA]" /GO_process="GO:0030244 - cellulose biosynthetic process [Evidence IEA]; GO:0006011 - UDP-glucose metabolic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="UDP-forming cellulose synthase catalytic subunit" /protein_id="WP_000025914.1" /translation="MSILTRWLLIPPVNARLIGRYRDYRRHGASAFSATLGCFWMILA WIFIPLEHPRWQRIRAEHKNLYPHINASRPRPLDPVRYLIQTCWLLIGTSRKETPKPR RRAFSGLQNIRGRYHQWMNELPERVSHKTQHLDEKKELGHLSAGARRLILGIIVTFSL ILALICVTQPFNPLAQFIFLMLLWGVALIVRRMPGRFSALMLIVLSLTVSCRYIWWRY TSTLNWDDPVSLVCGLILLFAETYAWIVLVLGYFQVVWPLNRQPVPLPKDMSLWPSVD IFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQNVGVKYIART THEHAKAGNINNALKYAKGEFVSIFDCDHVPTRSFLQMTMGWFLKEKQLAMMQTPHHF FSPDPFERNLGRFRKTPNEGTLFYGLVQDGNDMWDATFFCGSCAVIRRKPLDEIGGIA VETVTEDAHTSLRLHRRGYTSAYMRIPQAAGLATESLSAHIGQRIRWARGMVQIFRLD NPLTGKGLKFAQRLCYVNAMFHFLSGIPRLIFLTAPLAFLLLHAYIIYAPALMIALFV LPHMIHASLTNSKIQGKYRHSFWSEIYETVLAWYIAPPTLVALINPHKGKFNVTAKGG LVEEEYVDWVISRPYIFLVLLNLVGVAVGIWRYFYGPPTEMLTVVVSMVWVFYNLIVL GGAVAVSVESKQVRRSHRVEMTMPAAIAREDGHLFSCTVQDFSDGGLGIKINGQAQIL EGQKVNLLLKRGQQEYVFPTQVARVMGNEVGLKLMPLTTQQHIDFVQCTFARADTWAL WQDSYPEDKPLESLLDILKLGFRGYRHLAEFAPSSVKGIFRVLTSLVSWVVSFIPRRP ERSETAQPSDQALAQQ" gene 7463..9802 /gene="bcsB" /locus_tag="E5S39_RS20960" /old_locus_tag="E5S39_20960" CDS 7463..9802 /gene="bcsB" /locus_tag="E5S39_RS20960" /old_locus_tag="E5S39_20960" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_417989.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB" /protein_id="WP_001307454.1" /translation="MKRKLFWICAVAMGMSAFPSFMTQATPATQPLINAEPAVAAQTE QNPQVGQVMPGVQGADAPVVAQNGPSRDVKLTFAQIAPPPGSMVLRGINPNGSIEFGM RSDEVVTKAMLNLEYTPSPSLLPVQSQLKVYLNDELMGVLPVTKEQLGKKTLAQMPIN PLFITDFNRVRLEFVGHYQDVCENPASTTLWLDVGRSSGLDLTYQTLNVKNDLSHFPV PFFDPRDNRTNTLPMVFAGAPDVGLQQASAIVASWFGSRSGWRGQNFPVLYNQLPDRN AIVFATNDKRPDFLRDHPAVKAPVIEMINHPQNPYVKLLVVFGRDDKDLLQAAKGIAQ GNILFRGESVVVNEVKPLLPRKPYDAPNWVRTDRPVTFGELKTYEEQLQSSGLEPAAI NVSLNLPPDLYLMRSTGIDMDINYRYTMPPVKDSSRMDISLNNQFLQSFNLSSKQEAN RLLLRIPVLQGLLDGKTDVSIPALKLGATNQLRFDFEYMNPMPGGSVDNCITFQPVQN HVVIGDDSTIDFSKYYHFIPMPDLRAFANAGFPFSRMADLSQTITVMPKAPNEAQMET LLNTVGFIGAQTGFPAINLTVTDDGSTIQGKDADIMIIGGIPDKLKDDKQIDLLVQAT ESWVKTPMRQTPFPGIVPDESDRAAETQSTLTSSGAMAAVIGFQSPYNDQRSVIALLA DSPRGYEMLNDAVNDSGKRATMFGSVAVIRESGINSLRVGDVYYVGHLPWFERLWYAL ANHPILLAVLAAISVILLAWVLWRLLRIISRRRLNPDNE" gene 9809..10915 /gene="bcsZ" /locus_tag="E5S39_RS20965" /old_locus_tag="E5S39_20965" CDS 9809..10915 /gene="bcsZ" /locus_tag="E5S39_RS20965" /old_locus_tag="E5S39_20965" /EC_number="3.2.1.4" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_312438.1" /GO_function="GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]" /GO_process="GO:0005975 - carbohydrate metabolic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="cellulose synthase complex periplasmic endoglucanase BcsZ" /protein_id="WP_001307453.1" /translation="MNVLRSGIVTMLLLAAFSVQAACTWPAWEQFKKDYISQEGRVID PSDARKITTSEGQSYGMFFALAANDRVAFDNILDWTQNNLAQGSLKERLPAWLWGKKE NSKWEVLDSNSASDGDVWMAWSLLEAGRLWKEQRYTDIGSALLKRIAREEVVTVPGLG SMLLPGKVGFAEDNSWRFNPSYLPPTLAQYFTRFGAPWTTLRETNQRLLLETAPKGFS PDWVRYEKDKGWQLKAEKTLISSYDAIRVYMWVGMMPDSDPQKARMLNRFKPMATFTE KNGYPPEKVDVATGKAQGKGPVGFSAAMLPFLQNRDAQAVQRQRVADNFPGSDAYYNY VLTLFGQGWDQHRFRFSTKGELLPDWGQECANSH" gene 10897..14370 /gene="bcsC" /locus_tag="E5S39_RS20970" /old_locus_tag="E5S39_20970" CDS 10897..14370 /gene="bcsC" /locus_tag="E5S39_RS20970" /old_locus_tag="E5S39_20970" /inference="COORDINATES: similar to AA sequence:RefSeq:YP_026226.4" /GO_component="GO:0019867 - outer membrane [Evidence IEA]" /GO_function="GO:0005515 - protein binding [Evidence IEA]" /GO_process="GO:0030244 - cellulose biosynthetic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="cellulose synthase complex outer membrane protein BcsC" /protein_id="WP_001225107.1" /translation="MRKFTLNIFTLSLGLAVMPMVEAAPTAQQQLLEQVRLGEATHRE DLVQQSLYRLELIDPNNPDVVAARFRSLLRQGDIDGAQKQLDRLSQLAPSSNAYKSSR TTMLLSTPDGRQALQQARLQATTGHAEEAVASYNKLFNGAPPEGDIAVEYWSTVAKIP ARRGEAINQLKRINADAPGNTGLQNNLALLLFSSDRRDEGFAVLEQMAKSNAGREGAS KIWYGQIKDMPVSDASVSALKKYLSIFSDGDSVAAAQSQLAEQQKQLADPAFRARAQG LAAVDSGMAGKAIPELQQAVRANPKDSEALGALGQAYSQKGDRANAVANLEKALALDP HSSNNDKWNSLLKVNRYWLAIQQGDAALKANNPDRAERLFQQARNVDNTDSYAVLGLG DVAMARKDYPAAERYYQQTLRMDSGNTNAVRGLANIYRQQSPEKAEAFIASLSASQRR SIDDIERSLQNDRLAQQAEALENQGKWAQAAALQRQRLALDPGSVWITYRLSQDLWQA GQRSQADTLMRNLAQQKPNDPEQVYAYGLYLSGHDQDRAALAHINSLPRAQWNSNIHE LVNRLQSDQVLETANRLRESGKEAEAEAMLRQQPPSTRIDLTLADWAQQRRDYTAARA AYQNVLTREPTNADAILGLTEVDIAAGDTAAARSQLAKLPATDNASLNTQRRVALAQA QLGDTAAAQQTFNKLIPQAKSQPPSMESAMVLRDGAKFEAQAGDPKQALETYKDAMVA SGVTTTRPQDNDTFTRLTRNDEKDDWLKRGVRSDAADLYRQQDLNVTLEHDYWGSSGT GGYSDLKAHTTMLQVDAPYSDGRMFFRSDFVNMNVGSFSTNADGKWDDNWGTCTLQDC SGNRSQSDSGASVAVGWRNDVWSWDIGTTPMGFNVVDVVGGISYSDDIGPLGYTVNAH RRPISSSLLAFGGQKDSPSNTGKKWGGVRADGVGLSLSYDKGEANGVWASLSGDQLTG KNVEDNWRVRWMTGYYYKVINQNNRRVTIGLNNMIWHYDKDLSGYSLGQGGYYSPQEY LSFAIPVMWRERTENWSWELGASGSWSHSRTKTMPRYPLMNLIPTDWQEEAARQSNDG GSSQGFGYTARALLERRVTSNWFVGTAIDIQQAKDYAPSHFLLYVRYSAAGWQGDMDL PPQPLIPYADW" gene 14452..16440 /gene="hmsP" /locus_tag="E5S39_RS20975" /old_locus_tag="E5S39_20975" CDS 14452..16440 /gene="hmsP" /locus_tag="E5S39_RS20975" /old_locus_tag="E5S39_20975" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_417986.4" /GO_process="GO:0007165 - signal transduction [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="biofilm formation regulator HmsP" /protein_id="WP_001266306.1" /translation="MRVSRSLTIKQMAMVAAVVLVFVFIFCTVLLFHLVQQNRYNTAT QLESIARSVREPLSSAILKGDIPEAEAILASIKPAGVVSRADVVLPNQFQALRKSFIP ERPVPVMVTRLFELPVQISLGVYSLERPANPQPIAYLVLQADSFRMYKFVMSTLSTLV TIYLLLSLILTVAISWCINRLILHPLRNIARELNAIPAQELVGHQLALPRLHQDDEIG MLVRSYNLNQQLLQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTTALMIIT CETLRDTAGVLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHA ITLGQQVLTIMSERLPIERIQLRPHCSIGVAMFYGDLTAEQLYSRAISAAFTARHKGK NQIQFFDPQQMEAAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQ QPDGSWDLPDGLIDRIECCGLMVTVGHWVLEESCRLLAAWQERGIMLPLSVNLSALQL MHPNMVADMLELLTRYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDF GMGYAGLRQLQHMKSLPIDVLKIDKMFVEGLPEDSSMIAAIIMLAQSLNLQMIAEGVE TEAQRDWLAKAGVGIAQGFLFARPLPIEIFEESYLEEK" gene 16623..17909 /gene="dctA" /locus_tag="E5S39_RS20980" /old_locus_tag="E5S39_20980" CDS 16623..17909 /gene="dctA" /locus_tag="E5S39_RS20980" /old_locus_tag="E5S39_20980" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_417985.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="C4-dicarboxylate transporter DctC" /protein_id="WP_000858214.1" /translation="MKTSLFKSLYFQVLTAIAIGILLGHFYPEIGEQMKPLGDGFVKL IKMIIAPVIFCTVVTGIAGMESMKAVGRTGAVALLYFEIVSTIALIIGLIIVNVVQPG AGMNVDPATLDAKAVAVYADQAKDQGIVAFIMDVIPASVIGAFASGNILQVLLFAVLF GFALHRLGSKGQLIFNVIESFSQVIFGIINMIMRLAPIGAFGAMAFTIGKYGVGTLVQ LGQLIICFYITCILFVVLVLGSIAKATGFSIFKFIRYIREELLIVLGTSSSESALPRM LDKMEKLGCRKSVVGLVIPTGYSFNLDGTSIYLTMAAVFIAQATNSQMDIVHQITLLI VLLLSSKGAAGVTGSGFIVLAATLSAVGHLPVAGLALILGIDRFMSEARALTNLVGNG VATIVVAKWVKELDHKKLDDVLNNRAPDGKTHELSS" gene 18130..19626 /gene="yhjJ" /locus_tag="E5S39_RS20985" /old_locus_tag="E5S39_20985" CDS 18130..19626 /gene="yhjJ" /locus_tag="E5S39_RS20985" /old_locus_tag="E5S39_20985" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_312434.1" /GO_function="GO:0046872 - metal ion binding [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="M16 family metallopeptidase" /protein_id="WP_001163137.1" /translation="MQGTKIRLLAGGLLMMATAGYVQADALQPDPAWQQGTLSNGLQW QVLTTPQRPSDRVEIRLLVNTGSLAESTQQSGYSHAIPRIALTQSGGLDAAQARSLWQ QGIDPKRPMPPVIVSYDTTLFNLSLPNNRNDLLKEALSYLANATGKLTITPETINHAL QSQDMVATWPADTKEGWWRYRLKGSTLLGHDPADPLKQPVEAEKIKDFYQKWYTPDAM TLLVVGNVDARSVVDQINKTFGELKGKRETPAPVPTLSPLRAEAVSIMTDAVRQDRLS IMWDTPWQPIRESAALLRYWRADLAREALFWHVQQALSASNSKDIGLGFDCRVLYLRA QCAINIESPNDKLNSNLNLVARELAKVRDKGLPEEEFNALVAQKKLELQKLFAAYARA DTDILMGQRMRSLQNQVVDIAPEQYQKLRQDFLNSLTVEMLNQDLRQQLSNDMALILL QPKGEPEFNMKALQAAWDQIMAPSTAAATTSVATDDVHPEVTDIPPAQ" gene complement(19722..20651) /gene="kdgK" /locus_tag="E5S39_RS20990" /old_locus_tag="E5S39_20990" CDS complement(19722..20651) /gene="kdgK" /locus_tag="E5S39_RS20990" /old_locus_tag="E5S39_20990" /EC_number="2.7.1.45" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_417983.2" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="2-dehydro-3-deoxygluconokinase" /protein_id="WP_001296796.1" /translation="MSKKIAVIGECMIELSEKGADVKRGFGGDTLNTSVYIARQVDPA ALTVHYVTALGTDSFSQQMLDAWHGENVDTSLTQRMENRLPGLYYIETDSTGERTFYY WRNEAAAKFWLESEQSAAICEELANFDYLYLSGISLAILSPTSREKLLSLLRECRANG GKVIFDNNYRPRLWASKEETQQVYQQMLECTDIAFLTLDDEDALWGQQPVEDVIARTH NAGVKEVVVKRGADSCLVSIAGEGLVDVPAVKLPKEKVIDTTAAGDSFSAGYLAVRLT GGSAENAAKRGHLTASTVIQYRGAIIPREAMPA" gene 20883..21650 /gene="pdeH" /locus_tag="E5S39_RS20995" /old_locus_tag="E5S39_20995" CDS 20883..21650 /gene="pdeH" /locus_tag="E5S39_RS20995" /old_locus_tag="E5S39_20995" /EC_number="3.1.4.52" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_417982.2" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="cyclic-guanylate-specific phosphodiesterase" /protein_id="WP_001295219.1" /translation="MIRQVIQRISNPEASIESLQERRFWLQCERAYTWQPIYQTCGRL MAVELLTVVTHPLNPSQRLPPDRYFTEITVSHRMEVVKEQIDLLAQKADFFIEHGLLA SVNIDGPTLIALRQQPKILRQIERLPWLRFELVEHIRLPKDSTFASMCEFGPLWLDDF GTGMANFSALSEVRYDYIKIARELFVMLRQSPEGRTLFSQLLHLMNRYCRGVIVEGVE TPEEWRDVQNSPAFAAQGWFLSRPAPIETLNTAVLAL" gene 21720..23780 /gene="yhjG" /locus_tag="E5S39_RS21000" /old_locus_tag="E5S39_21000" CDS 21720..23780 /gene="yhjG" /locus_tag="E5S39_RS21000" /old_locus_tag="E5S39_21000" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_417981.2" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="AsmA family protein" /protein_id="WP_001296794.1" /translation="MSKAGKITAAISGAFLLLIVVAIILIATFDWNRLKPTINQKVSA ELNRPFAIRGDLGVVWERQKQETGWRSWVPWPHVHAEDIILGNPPDIPEVTMVHLPRV EATLAPLALLTKTVWLPWIKLEKPDARLIRLSEKNNNWTFNLANDDNKDANAKPSAWS FRLDNILFDQGRIAIDDKVSKADLEIFVDPLGKPLPFSEVTGSKGKADKEKVGDYVFG LKAQGRYNGEPLTGTGKIGGMLALRGEGTPFPVQADFRSGNTRVAFDGVVNDPMKMGG VDLRLKFSGDSLGDLYELTGVLLPDTPPFETDGRLVAKIDTEKSSVFDYRGFNGRIGD SDIHGSLVYTTGKPRPKLEGDVESRQLRLADLGPLIGVDSGKGAEKSKRSEQKKGEKS VQPAGKVLPYDRFETDKWDVMDADVRFKGRRIEHGSSLPISDLSTHIILKNADLRLQP LKFGMAGGSIAANIHLEGDKKPMQGRADIQARRLKLKELMPDVELMQKTLGEMNGDAE LRGSGNSVAALLGNSNGNLKLLMNDGLVSRNLMEIVGLNVGNYIVGAIFGDDEVRVNC AAANLNIANGVARPQIFAFDTENALINVTGTASFASEQLDLTIDPESKGIRIITLRSP LYVRGTFKNPQAGVKAGPLIARGAVAAALATLVTPAAALLALISPSEGEANQCRTILS QMKK" gene complement(24014..25336) /gene="yhjE" /locus_tag="E5S39_RS21005" /old_locus_tag="E5S39_21005" CDS complement(24014..25336) /gene="yhjE" /locus_tag="E5S39_RS21005" /old_locus_tag="E5S39_21005" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_417980.1" /GO_function="GO:0022857 - transmembrane transporter activity [Evidence IEA]" /GO_process="GO:0055085 - transmembrane transport [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="MFS transporter" /protein_id="WP_001149002.1" /translation="MQATATTLDHEQEYTPINSRNKVLVASLIGTAIEFFDFYIYATA AVIVFPHIFFPQGDPTAATLQSLATFAIAFVARPIGSAVFGHFGDRVGRKATLVASLL TMGISTVVIGLLPGYATIGIFAPLLLALARFGQGLGLGGEWGGAALLATENAPPRKRA LYGSFPQLGAPIGFFFANGTFLLLSWLLTDEQFMSWGWRVPFIFSAVLVIIGLYVRVS LHESPVFEKVAKAKKQVKIPLGTLLTKHVRVTVLGTFIMLATYTLFYIMTVYSMTFST AAAPVGLGLPRNEVLWMLMMAVIGFGVMVPVAGLLADAFGRRKSMVIITTLIILFALF AFNPLLGSGNPILVFAFLLLGLSLMGLTFGPMGALLPELFPTEVRYTGASFSYNVASI LGASVAPYIAAWLQANYGLGAVGLYLAAMAGLTLIALLLTHETRHQSL" gene complement(25726..26760) /gene="yhjD" /locus_tag="E5S39_RS21010" /old_locus_tag="E5S39_21010" CDS complement(25726..26760) /gene="yhjD" /locus_tag="E5S39_RS21010" /old_locus_tag="E5S39_21010" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_312429.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="inner membrane protein YhjD" /protein_id="WP_000191258.1" /translation="MTQENEIKRPTQDLEHEPIKQLDNSEKGGKVSQALETVTTTAEK VQRQPVIAHLIRATERFNDRLGNQFGAAITYFSFLSMIPILMVSFAAGGFVLASHPML LQDIFDKILQNISDPTLAATLKNTINTAVQQRTTVGLVGLAVALYSGINWMGNLREAI RAQSRDVWERSPQDQEKFWVKYLRDFISLIGLLIALIVTLSITSVAGSAQQMIISALH LNSIEWLKPTWRLIGLAISIFANYLLFFWIFWRLPRHRPRKKALIRGTFLAAIGFEVI KIVMTYTLPSLMKSPSGAAFGSVLGLMAFFYFFARLTLFCAAWIATAEYKDDPRMPGK TQPYNRPDAA" gene complement(26809..27708) /gene="rcdB" /locus_tag="E5S39_RS21015" /old_locus_tag="E5S39_21015" CDS complement(26809..27708) /gene="rcdB" /locus_tag="E5S39_RS21015" /old_locus_tag="E5S39_21015" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_417978.2" /GO_function="GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="WP_096940733.1" /translation="MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQL GTQLLQRTTRRVKLTPEGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGI AKSLLLPRLSEFLYLHPGIELELSSHDRPVDILHDGFDCVIRTGALPEDGVIARPLGK LTMVNCASPHYLTRFGYPQSPDDLTSHAIVRYTPHLGVHPLGFEVASVNGVQWFKSGG MLTINSSENYLAAGLAGLGIIQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQR RELSRRVNLFMQWLAGVMKEHLD" gene 28228..28830 /gene="yhjB" /locus_tag="E5S39_RS21020" /old_locus_tag="E5S39_21020" CDS 28228..28830 /gene="yhjB" /locus_tag="E5S39_RS21020" /old_locus_tag="E5S39_21020" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_417977.1" /GO_function="GO:0003677 - DNA binding [Evidence IEA]" /GO_process="GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="helix-turn-helix transcriptional regulator" /protein_id="WP_001167678.1" /translation="MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLES YPEALVMLDGDQDGEFCYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVP RDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNK EISRALNISTGTVKAHLESLYRRLEVKNRTQAAMMLNISS" gene complement(28881..30530) /gene="treF" /locus_tag="E5S39_RS21025" /old_locus_tag="E5S39_21025" CDS complement(28881..30530) /gene="treF" /locus_tag="E5S39_RS21025" /old_locus_tag="E5S39_21025" /EC_number="3.2.1.28" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_709297.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="alpha,alpha-trehalase" /protein_id="WP_000934218.1" /translation="MLNQKIQNPNPDELMIEVDLCYELDPYELKLDEMIEAEPEPEMI EGLPASDALTPADRYLELFEHVQSAKIFPDSKTFPDCAPKMDPLDILIRYRKVRRHRD FDLRKFVENHFWLPEVYSSEYVSDPQNSLKEHIDQLWPVLTREPQDHIPWSSLLALPQ SYIVPGGRFSETYYWDSYFTMLGLAESGREDLLKCMADNFAWMIENYGHIPNGNRTYY LSRSQPPVFALMVELFEEDGVRGARRYLDHLKMEYAFWMDGAESLIPNQAYRHVVRMP DGSLLNRYWDDRDTPRDESWLEDVETAKHSGRPPNEVYRDLRAGAASGWDYSSRWLRD TGRLASIRTTQFIPIDLNAFLFKLESAIANISALKGEKETEALFRQKASARRDAVNRY LWDDENGIYRDYDWRREQLALFSAAAIVPLYVGMANHEQADRLANAVRSRLLTPGGIL ASEYETGEQWDKPNGWAPLQWMAIQGFKMYGDDLLGDEIARSWLKTVNQFYLEQHKMI EKYHIADGVPREGGGGEYPLQDGFGWTNGVVRRLIGLYGEP" gene 30935..32332 /gene="ccp" /locus_tag="E5S39_RS21030" /old_locus_tag="E5S39_21030" CDS 30935..32332 /gene="ccp" /locus_tag="E5S39_RS21030" /old_locus_tag="E5S39_21030" /EC_number="1.11.1.-" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_312425.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="cytochrome c peroxidase" /protein_id="WP_000784821.1" /translation="MKMVSRITAIGLAGVAICYLGLSGYVWYHDNKRSKQADVQASAV SENNKVLGFLREKGCDYCHTPSAELPAYYYIPGAKQLMDYDIKLGYKSFNLEAVRAAL LADKPVSQSDLNKIEWVMQYETMPPTRYTALHWAGKVSDEERAEILAWIAKQRAEYYA SNDTAPEHRNEPVQPIPQKLPTDAQKVALGFALYHDPRLSADSTISCAHCHALNAGGV DGRKTSIGVGGAVGPINAPTVFNSVFNVEQFWDGRAATLQDQAGGPPLNPIEMASKSW DEIIAKLEKDPQLKAQFLEVYPQGFSGENITDAIAEFEKTLITPDSPFDKWLRGDENA LTAQQKKGYQLFKDNKCATCHGGIILGGRSFEPLGLKKDFNFGEITAADIGRMNVTKE ERDKLRQKVPGLRNVALTAPYFHRGDVPTLDGAVKLMLRYQVGKELPQEDVDDIVAFL HSLNGVYTPYMQDKQ" gene 32543..>32903 /locus_tag="E5S39_RS21035" /old_locus_tag="E5S39_21035" CDS 32543..>32903 /locus_tag="E5S39_RS21035" /old_locus_tag="E5S39_21035" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_312424.1" /GO_function="GO:0016830 - carbon-carbon lyase activity [Evidence IEA]; GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]" /GO_process="GO:0019752 - carboxylic acid metabolic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="pyridoxal-dependent decarboxylase" /protein_id="WP_135411599.1" /translation="MDQKLLTDFRSELLDSRFGAKAISTIAESKRFPLHEMRDDVAFQ IINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAVIDLRCVN MVADLWHAPAPKNGQAVG" CONTIG join(SRMZ01000036.1:1..32903) //
Whole sequence (abbreviated view) Selected region from: to:
All features Gene, RNA, and CDS features only
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