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NCBI Reference Sequence: NZ_SQQY01000043.1
FASTA Graphics
LOCUS NZ_SQQY01000043 35538 bp DNA linear CON 07-SEP-2024 DEFINITION Escherichia coli strain RXD024 E_coli_RXD24_ctg0043, whole genome shotgun sequence. ACCESSION NZ_SQQY01000043 NZ_SQQY01000000 VERSION NZ_SQQY01000043.1 DBLINK BioProject: PRJNA224116 BioSample: SAMN11246196 Assembly: GCF_009600735.1 KEYWORDS WGS; RefSeq. SOURCE Escherichia coli ORGANISM Escherichia coli Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia. REFERENCE 1 (bases 1 to 35538) AUTHORS Peng,Z., Li,X., Hu,Z., Li,Z., Lv,Y., Lei,M., Wu,B., Chen,H. and Wang,X. TITLE Characteristics of Carbapenem-Resistant and Colistin-Resistant Escherichia coli Co-Producing NDM-1 and MCR-1 from Pig Farms in China JOURNAL Microorganisms 7 (11), 482 (2019) PUBMED 31652858 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 35538) AUTHORS Peng,Z. and Wang,X. TITLE Direct Submission JOURNAL Submitted (25-MAR-2019) College of Veterinary Medicine, Huazhong Agricultural University, No. 1 Shizishan Street, Wuhan, Hubei 430070, China COMMENT REFSEQ INFORMATION: The reference sequence is identical to SQQY01000043.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: SPAdes v. 3.9.0 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 12x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_009600735.1-RS_2024_09_07 Annotation Date :: 09/07/2024 05:06:30 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.8 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 5,451 CDSs (total) :: 5,333 Genes (coding) :: 5,019 CDSs (with protein) :: 5,019 Genes (RNA) :: 118 rRNAs :: 9, 4, 9 (5S, 16S, 23S) complete rRNAs :: 9, 2, 2 (5S, 16S, 23S) partial rRNAs :: 2, 7 (16S, 23S) tRNAs :: 84 ncRNAs :: 12 Pseudo Genes (total) :: 314 CDSs (without protein) :: 314 Pseudo Genes (ambiguous residues) :: 0 of 314 Pseudo Genes (frameshifted) :: 108 of 314 Pseudo Genes (incomplete) :: 219 of 314 Pseudo Genes (internal stop) :: 57 of 314 Pseudo Genes (multiple problems) :: 64 of 314 Pseudo Genes (short protein) :: 1 of 314 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..35538 /organism="Escherichia coli" /mol_type="genomic DNA" /submitter_seqid="E_coli_RXD24_ctg0043" /strain="RXD024" /db_xref="taxon:562" /geo_loc_name="China: Henan" /lat_lon="33.23 N 113.21 E" /collection_date="2018-11" gene <1..340 /gene="tnpA" /locus_tag="E4K55_RS22285" /old_locus_tag="E4K55_22730" /pseudo CDS <1..340 /gene="tnpA" /locus_tag="E4K55_RS22285" /old_locus_tag="E4K55_22730" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_000604919.1" /GO_function="GO:0004803 - transposase activity [Evidence IEA]" /note="internal stop; incomplete; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=2 /transl_table=11 /product="IS200/IS605 family transposase" gene complement(358..1026) /gene="ydcL" /locus_tag="E4K55_RS22290" /old_locus_tag="E4K55_22735" CDS complement(358..1026) /gene="ydcL" /locus_tag="E4K55_RS22290" /old_locus_tag="E4K55_22735" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_310063.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DUF3313 domain-containing protein" /protein_id="WP_001261013.1" /translation="MRTTSFAKVAALCGLLALSGCASKITQPDKYSGFLNNYSDLKET TSATGKPVLRWVDPSFDQSKYDSIVWNPITYYPVPKPSTQVGQKVLDKILNYTNTEMK EAIAQRKPLVTTAGPRSLIFRGAITGVDTSKEGLQFYEVVPVALVVAGTQMATGHRTM DTRLYFEGELIDAATNKPVIKVVRQGEGKDLNNESTPMAFENIKQVIDDMATDATMFD VNKK" gene complement(1328..1921) /gene="tehB" /locus_tag="E4K55_RS22295" /old_locus_tag="E4K55_22740" CDS complement(1328..1921) /gene="tehB" /locus_tag="E4K55_RS22295" /old_locus_tag="E4K55_22740" /EC_number="2.1.1.265" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_415947.1" /GO_function="GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]" /GO_process="GO:0046690 - response to tellurium ion [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="tellurite resistance methyltransferase TehB" /protein_id="WP_000586732.1" /translation="MIIRDENYFTDKYELTRTHSEVLEAVKVVKPGKTLDLGCGNGRN SLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYDFILST VVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYY EGWERVKYNEDVGELHRTDANGNRIKLRFATMLARKK" gene complement(1918..2910) /gene="tehA" /locus_tag="E4K55_RS22300" /old_locus_tag="E4K55_22745" CDS complement(1918..2910) /gene="tehA" /locus_tag="E4K55_RS22300" /old_locus_tag="E4K55_22745" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_415946.1" /GO_component="GO:0016020 - membrane [Evidence IEA]" /GO_process="GO:0055085 - transmembrane transport [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="dicarboxylate transporter/tellurite-resistance protein TehA" /protein_id="WP_024176452.1" /translation="MQSDKVLNLPAGYFGIVLGTIGMGFAWRYASQVWQVSHWLGDGL VILAMIIWGLLTSAFIARLIRFPHSVLAEVRHPVLSSFVSLFPATTMLVAIGFVPWFR PLAVWLFSFGVVVQLAYAAWQTAGLWRGSHPEEATTPGLYLPTVANNFISAMACGALG YTDAGLVFLGAGVFSWLSLEPVILQRLRSSGELPTALRTSLGIQLAPALVACSAWLSV NGGEGDTLAKMLFGYGLLQLLFMLRLMPWYLSQPFNASFWSFSFGVSALATTGLHLGS GSDNGFFHTLAVPLFIFTNFIIAILLIRTFALLMQGKLLVRTERAVLMKAEDKE" gene 3034..4014 /gene="ydcK" /locus_tag="E4K55_RS22305" /old_locus_tag="E4K55_22750" CDS 3034..4014 /gene="ydcK" /locus_tag="E4K55_RS22305" /old_locus_tag="E4K55_22750" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_415945.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="YdcK family protein" /protein_id="WP_001234042.1" /translation="MRKYRLSEEQRAFSYQEDGTKKNVLLRQIIAISDFNDVIAGTAG GWIDRETVLAQEGNCWIYDQNAIAFGGAVISGNTRITGTSVLWGEVYATDNVWIDNSE ISQGAYISDSVTIHDSLVYGQCRIFGHALIDQHSMIVAAQGLTPDHQLLLQIYDRARV SASRIVHQAQIYGDAVVRYAFIEHRAEVFDFASIEGNEENNVWLCDCAKVYGHAQVKA GIEEDAIPTIHYSSQVAEYAIVEGNCVLKHHVLVGGNAVVRGGPILLDEHVVIQGESR ITGAVIIENHVELTDHAVVEAFDGDTVHVRGPKVINGEERITRTPLAGLL" gene complement(4006..4545) /gene="rimL" /locus_tag="E4K55_RS22310" /old_locus_tag="E4K55_22755" CDS complement(4006..4545) /gene="rimL" /locus_tag="E4K55_RS22310" /old_locus_tag="E4K55_22755" /EC_number="2.3.1.-" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_415944.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="50S ribosomal protein L7/L12-serine acetyltransferase" /protein_id="WP_000140873.1" /translation="MTETIKVSESLELHAVAENHVKPLYQLICKNKTWLQQSLNWPQF VQSEEDTRKTVQGNVMLHQRGYAKMFMIFKEDELIGVISFNRIEPLNKTAEIGYWLDE SHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPQSNQVALRNGFILEGCLKQAE FLNDAYDDVNLYARIIDSQ" gene complement(4608..4832) /gene="ydcH" /locus_tag="E4K55_RS22315" /old_locus_tag="E4K55_22760" CDS complement(4608..4832) /gene="ydcH" /locus_tag="E4K55_RS22315" /old_locus_tag="E4K55_22760" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_415943.4" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="YdcH family protein" /protein_id="WP_001296778.1" /translation="MFPEYRDLISRLKNENPRFMSLFDKHNKLDHEIARKEGSDGRGY NAEVVRMKKQKLQLKDEMLKILQQESVKEV" gene complement(4972..6627) /gene="opgD" /locus_tag="E4K55_RS22320" /old_locus_tag="E4K55_22765" /gene_synonym="mdoD" CDS complement(4972..6627) /gene="opgD" /locus_tag="E4K55_RS22320" /old_locus_tag="E4K55_22765" /gene_synonym="mdoD" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_415941.5" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="glucan biosynthesis protein OpgD" /protein_id="WP_000375961.1" /translation="MDRRRFIKGSMAMAAVCGTSGIASLFSQAAFAADSDIADGQTQR FDFSILQSMAHDLAQTAWRGAPRPLPDTLATMTPQAYNSIQYDAEKSLWHNVENRQLD AQFFHMGMGFRRRVRMFSVDPATHLAREIHFRPELFKYNDAGVDTKQLEGQSDLGFAG FRVFKAPELARRDVVSFLGASYFRAVDDTYQYGLSARGLAIDTYTDSKEEFPDFTAFW FDTVKPGATTFTVYALLDSASITGAYKFTIHCEKSQVIMDVENHLYARKDIKQLGIAP MTSMFSCGTNERRMCDTIHPQIHDSDRLSMWRGNGEWICRPLNNPQKLQFNAYTDNNP KGFGLLQLDRDFSHYQDIMGWYNKRPSLWVEPRNKWGKGTIGLMEIPTTGETLDNIVC FWQPEKAVKAGDEFAFQYRLYWSAQPPVHCPLARVMATRTGMGGFSEGWAPGEHYPEK WARRFAVDFVGGDLKAAAPKGIEPVITLSSGEAKQIEILYIEPIDGYRIQFDWYPTSD STDPVDMRMYLRCQGDAISETWLYQYFPPAPDKRQYVDDRVMS" gene complement(6852..8195) /gene="ydcJ" /locus_tag="E4K55_RS22325" /old_locus_tag="E4K55_22770" CDS complement(6852..8195) /gene="ydcJ" /locus_tag="E4K55_RS22325" /old_locus_tag="E4K55_22770" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_415940.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="VOC family protein" /protein_id="WP_000013789.1" /translation="MANSITADEIREQFSQAMSAMYQQEVPQYGTLLELVADVNLAVL ENNPQLHEKMVNADELARLNVERHGAIRVGTAQELATLRRMFAIMGMYPVSYYDLSQA GVPVHSTAFRPIDDASLARNPFRVFTSLLRLELIENEILRQKAAEILRQRDIFTPRCR QLLEEYEQQGGFNETQAQEFVQEALETFRWHQSATVDEETYRALHNEHRLIADVVCFP GCHINHLTPRTLDIDRVQSMMPECGIEPKILIEGPPRREVPILLRQTSFKALEETVLF AGQKQGTHTARFGEIEQRGVALTPKGRQLYDDLLRNAGTGQDNLTHQMHLQETFRTFP DSEFLMRQQGLAWFRYRLTPSGEAHRQAIHPGDDPQPLIERGWVVAQPITYEDFLPVS AAGIFQSNLGNETQTRSHGNASREAFEQALGCPVLDEFQLYQEAEERSKRRCGLL" gene 8412..9335 /gene="ydcI" /locus_tag="E4K55_RS22330" /old_locus_tag="E4K55_22775" CDS 8412..9335 /gene="ydcI" /locus_tag="E4K55_RS22330" /old_locus_tag="E4K55_22775" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_415939.2" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="LysR substrate-binding domain-containing protein" /protein_id="WP_000414567.1" /translation="MEKNSLFSQRIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSK TLNELEQLTGARLFERGRQGAQLTLPGEQFLTHAVRVLDAINTAGRSLHRKEGLNNDV VRVGALPTAALGILPSVIGQFHQQQKETTLQVATMSNPMILAGLKTGEIDIGIGRMSD PELMTGLNYELLFLESLKLVVRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDAL VQSQGCKIPSGCIETLSASLSRQLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGA GEPIGILTRVDATFSSGCQLMINAIRKSMPF" gene complement(9373..11013) /gene="trg" /locus_tag="E4K55_RS22335" /old_locus_tag="E4K55_22780" CDS complement(9373..11013) /gene="trg" /locus_tag="E4K55_RS22335" /old_locus_tag="E4K55_22780" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_415938.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis protein Trg" /protein_id="WP_001098562.1" /translation="MNTTPSQRLGFLHHIRLVPLFACILGGILVLFALSSALAGYFLW QADRDQRDVTAEIEIRTGLANSSDFLRSARINMIQAGAASRIAEMEAMKRNIAQAESE IKQSQQGYRAYQNRPVKTPADEALDTELNQRFQAYITGMQPMLKYAKNGMFEAIINHE SEQIRPLDNAYTDILNKAVKIRSTRANQLAELAHQRTRLGGMFMIGAFVLALVMTLIT FMVLRRIVIRPLQHAAQRIEKIASGDLTMNDEPAGRNEIGRLSRHLQQMQHSLGMTVG TVRQGAEEIYRGTSEISAGNADLSSRTEEQAAAIEQTAASMEQLTATVKQNADNAHHA SKLAQEVSIKASDGGQTVSGVVKTMGAISTSSKKISEITAVINSIAFQTNILALNAAV EAARAGEQGRGFAVVASEVRTLASRSAQAAKEIEGLISESVRLIDLGSDEVATAGKTM STIVDAVASVTHIMQEIAAASDEQSRGITQVSQAISEMDKVTQQNASLVEEASAAAVS LEEQAARLTEAVDVFRLHKHSVSAEPRGAGEPVSFATV" gene 11412..11561 /gene="hokB" /locus_tag="E4K55_RS22340" /old_locus_tag="E4K55_22790" CDS 11412..11561 /gene="hokB" /locus_tag="E4K55_RS22340" /old_locus_tag="E4K55_22790" /inference="COORDINATES: similar to AA sequence:RefSeq:YP_025301.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="type I toxin-antitoxin system toxin HokB" /protein_id="WP_001320773.1" /translation="MKHNPLVVCLLIICITILTFTLLTRQTLYELRFRDGDKEVAALM ACTSR" gene complement(11539..11607) /gene="yncP" /locus_tag="E4K55_RS27815" CDS complement(11539..11607) /gene="yncP" /locus_tag="E4K55_RS27815" /inference="COORDINATES: similar to AA sequence:RefSeq:YP_010051184.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="protein YncP" /protein_id="WP_211180495.1" /translation="MNLLVKCAGKIPALALTWTCRP" gene complement(11633..11806) /locus_tag="E4K55_RS22345" /old_locus_tag="E4K55_22795" CDS complement(11633..11806) /locus_tag="E4K55_RS22345" /old_locus_tag="E4K55_22795" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_415936.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="periplasmic protein" /protein_id="WP_000731833.1" /translation="MKKLALILFMGTLVSFYADAGRKPCSGSKGGISHCTAGGKFVCN DGSISASKKTCTN" gene complement(12051..12581) /gene="cybB" /locus_tag="E4K55_RS22350" /old_locus_tag="E4K55_22800" CDS complement(12051..12581) /gene="cybB" /locus_tag="E4K55_RS22350" /old_locus_tag="E4K55_22800" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_415935.2" /GO_component="GO:0016020 - membrane [Evidence IEA]" /GO_function="GO:0009055 - electron transfer activity [Evidence IEA]" /GO_process="GO:0022904 - respiratory electron transport chain [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="cytochrome b561" /protein_id="WP_000428998.1" /translation="MENKYSRLQISIHWLVFLLVIAAYCAMEFRGFFPRSDRPLINMI HVSCGISILVLMVVRLLLRLKYPTPPIIPKPKPMMTGLAHLGHLVIYLLFIALPVIGL VMMYNRGNPWFAFGLTMPYASEANFERVDSLKSWHETLANLGYFVIGLHAAAALAHHY FWKDNTLLRMMPRKRS" gene 12770..13770 /gene="gap" /locus_tag="E4K55_RS22355" /old_locus_tag="E4K55_22805" /pseudo CDS 12770..13770 /gene="gap" /locus_tag="E4K55_RS22355" /old_locus_tag="E4K55_22805" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_310049.1" /GO_function="GO:0051287 - NAD binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]; GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]" /GO_process="GO:0006006 - glucose metabolic process [Evidence IEA]" /note="frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="type I glyceraldehyde-3-phosphate dehydrogenase" gene complement(13812..15251) /gene="aldA" /locus_tag="E4K55_RS22360" /old_locus_tag="E4K55_22810" CDS complement(13812..15251) /gene="aldA" /locus_tag="E4K55_RS22360" /old_locus_tag="E4K55_22810" /EC_number="1.2.1.-" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_415933.1" /GO_function="GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="aldehyde dehydrogenase" /protein_id="WP_000115943.1" /translation="MSVPVQHPMYIDGQFVTWRGDAWIDVVNPATEAVISRIPDGQAE DARKAIDAAERAQPEWEALPAIERASWLRKISAGIRERASEISALIVEEGGKIQQLAE VEVAFTADYIDYMAEWARRYEGEIIQSDRPGENILLFKRALGVTTGILPWNFPFFLIA RKMAPALLTGNTIVIKPSEFTPNNAIAFAKIVDEIGLPRGVFNLVLGRGETVGQELAG NPKVAMVSMTGSVSAGEKIMATAAKNITKVCLELGGKAPAIVMDDADLELAVKAIVDS RVINSGQVCNCAERVYVQKGIYDQFVNRLGEAMQAVQFGNPAERNDIAMGPLINAAAL ERVEQKVARAVEEGARVAFGGKAVEGKGYYYPPTLLLDVRQEMSIMHEETFGPVLPVV AFDTLEDAISMANDSDYGLTSSIYTQNLNVAMKAIKGLKFGETYINRENFEAMQGFHA GWRKSGIGGADGKHGLHEYLQTQVVYLQS" gene complement(15448..16248) /gene="ydcF" /locus_tag="E4K55_RS22365" /old_locus_tag="E4K55_22815" CDS complement(15448..16248) /gene="ydcF" /locus_tag="E4K55_RS22365" /old_locus_tag="E4K55_22815" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_415932.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DUF218 domain-containing protein YdcF" /protein_id="WP_001027942.1" /translation="MNITPFPTLSPATIDAINVIGQWLAQDDFSGEVPYQADCVILAG NAVMPTIDAACKIARDQQIPLLISGGIGHSTTFLYSAIAQHPHYNTIRTTGRAEATIL ADIAHQFWHIPHEKIWIEDQSTNCGENARFSIALLNQAVERVHTAIVVQDPTMQRRTM ATFRRMTGDNPDAPRWLSYPGFVPQLGNNADSVIFINQLQGLWPVERYLSLLTGELPR LRDDSDGYGPRGRDFIVHVDFPAEVIHAWQTLKHDAVLIEAMESRSLR" gene complement(16520..20422) /gene="hrpA" /locus_tag="E4K55_RS22370" /old_locus_tag="E4K55_22820" CDS complement(16520..20422) /gene="hrpA" /locus_tag="E4K55_RS22370" /old_locus_tag="E4K55_22820" /EC_number="3.6.4.13" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_415931.4" /GO_function="GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0003724 - RNA helicase activity [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="ATP-dependent RNA helicase HrpA" /protein_id="WP_000139543.1" /translation="MTEQQKLTFTALQQRLDSLMLRDRLRFSRRLHGVKKVKNPDAQQ AIFQEMAKEIDQAAGKVLLREAARPEITYPDNLPVSQKKQDILEAIRDHQVVIVAGET GSGKTTQLPKICMELGRGIKGLIGHTQPRRLAARTVANRIAEELKTEPGGCIGYKVRF SDHVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLP RRPDLKIIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQ AIFDAVDELSQESHGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNR VFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQAS ANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAA FPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLE AQKHGCVREAMIITSALSIQDPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWNYLG EQQKALSSNAFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNSEPAEYREIHI ALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGLFKKPPKWVMVAELVETSRLWGR IAARIDPEWVEPVAQHLIKRTYSEPHWERAQGAVMATEKVTVYGLPIVAARKVNYSQI DPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELEHKSRRRDILVDDETLFEF YDQRISHDVISARHFDSWWKKVSRETPDLLNFEKSMLIKEGAEKISKLDYPNFWHQGN LKLRLSYQFEPGADADGVTVHIPLPLLNQVEESGFEWQIPGLRRELVIALIKSLPKPV RRNFVPAPNYAEAFLGRVKPLELPLLDSLERELRRMTGVTVDREDWHWDQVPDHLKIT FRVVDDKNKKLKEGRSLQDLKDALKGKVQETLSAVADDGIEQSGLHIWSFGQLPESYE QKRGNYKVKAWPALVDERDSVAIKLFDNPLEQKQAMWNGLRRLLLLNIPSPIKYLHEK LPNKAKLGLYFNPYGKVLELIDDCISCGVDKLIDANGGPVWTEEGFAALHEKVRAELN DTVVDIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDIKAQMGGLVYRGFVTGNGFK RLGDTLRYLQAIEKRLEKLAVDPHRDRAQMLKVENVQQAWQQWINKLPPARREDEDVK EIRWMIEELRVSYFAQQLGTPYPISDKRILQAMEQISG" gene 20623..21228 /gene="azoR" /locus_tag="E4K55_RS22375" /old_locus_tag="E4K55_22825" CDS 20623..21228 /gene="azoR" /locus_tag="E4K55_RS22375" /old_locus_tag="E4K55_22825" /EC_number="1.7.1.17" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_415930.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="FMN-dependent NADH-azoreductase" /protein_id="WP_000048950.1" /translation="MSKVLVLKSSILAGYSQSNQLSDYFVEQWREKHSADEITVRDLA ANPIPVLDGELVGALRPSDAPLTPRQQEALALSDELIAELKAHDVIVIAAPMYNFNIS TQLKNYFDLVARAGVTFRYTENGPEGLVTGKKAIVITSRGGIHKDGPTDLVTPYLSTF LGFIGITDVKFVFAEGIAYGPEMAAKAQSDAKAAIDSIVSA" gene complement(21282..22598) /gene="ynbD" /locus_tag="E4K55_RS22380" /old_locus_tag="E4K55_22830" CDS complement(21282..22598) /gene="ynbD" /locus_tag="E4K55_RS22380" /old_locus_tag="E4K55_22830" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_310040.2" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="phosphatase PAP2/dual specificity phosphatase family protein" /protein_id="WP_000627368.1" /translation="MITERRNVLLQGAGWLLLLAPFFFFTYGSLNQFTAVQDLNSHDI PSQVFGWETAIPFLPWTIVPYWSLDLLYGFSLFVCSTTFEQRRLVHRLILATVMACCG FLLYPLKFSFIRPEVSGVTGWLFSQLELFDLPYNQSPSLHIILCWLLWRHFRQHLAER WRKVCGGWFLLIAISTLTTWQHHFIDVITGLAVGMLIDWMVPVDRRWNYQKPDQRRIK IALPYVVGAGSCIVLMELMMMIQLWWSVWLCWPVLSLLIIGRGYGGLGAITTGKDSQG KLPPAVYWLTLPCRIGMWLSMRWFCRRLEPVSKMTAGVYLGAFPRHIPAQNAVLDVTF EFPRGRATKDRLYFCVPMLDLVVPEEGELRQAVAMLETLREEQGSVLVHCALGLSRSA LVVAAWLLCYGHCKTVNEAISYIRARRPQIVLTDEHKAMLRLWENR" gene complement(22588..24345) /gene="ynbC" /locus_tag="E4K55_RS22385" /old_locus_tag="E4K55_22835" CDS complement(22588..24345) /gene="ynbC" /locus_tag="E4K55_RS22385" /old_locus_tag="E4K55_22835" /EC_number="2.1.1.-" /EC_number="3.-.-.-" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_415928.1" /GO_function="GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="bifunctional alpha/beta hydrolase/class I SAM-dependent methyltransferase" /protein_id="WP_000431845.1" /translation="MENSRIPGEHFFTTSDNTALFYRHWPALQPGAKKVIVLFHRGHE HSGRLQHLVDELAMPDTAFYAWDARGHGKSSGPRGYSPSLARSVRDVDEFVRFAASDS QVGLEEVVVIAQSVGAVLVATWIHDYAPAIRGLVLASPAFKVKLYVPLARPALALWHR LRGLFFINSYVKGRYLTHDRQRGASFNNDPLITRAIAVNILLDLYKTSERIIRDAAAI TLPTQLLISGDDYVVHRQPQIDFYQRLRSPLKELHLLPGFYHDTLGEENRALAFEKMQ SFISRLYANKSQKFDYQHEDCTGPSADRWRLLSGGPVPLSPVDLAYRFMRKAMKLFGT HSSGLHLGMSTGFDSGSSLDYVYQNQPQGSNAFGRLVDKIYLNSVGWRGIRQRKTHLQ ILIKQAVADLHAKGLAVRVVDIAAGHGRYVLDALANEPAVSDILLRDYSELNVAQGQE MIAQRGMSGRVRFEQGDAFNPEELSALTPRPTLAIVSGLYELFPENEQVKNSLAGLAN AIEPGGILIYTGQPWHPQLEMIAGVLTSHKDGKPWVMRVRSQGEMDSLVRDAGFDKCT QRIDEWGIFTVSMAVRRDN" gene complement(24361..25257) /gene="ynbB" /locus_tag="E4K55_RS22390" /old_locus_tag="E4K55_22840" CDS complement(24361..25257) /gene="ynbB" /locus_tag="E4K55_RS22390" /old_locus_tag="E4K55_22840" /EC_number="2.7.7.41" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_415927.1" /GO_function="GO:0004605 - phosphatidate cytidylyltransferase activity [Evidence IEA]" /GO_process="GO:0016024 - CDP-diacylglycerol biosynthetic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="phosphatidate cytidylyltransferase" /protein_id="WP_000890941.1" /translation="MLEKSLATLFALLILATLINRFLLWRLPERKGGEVTLRIRTWWG IVICFSMVISGPRWMTLTFFALISFLALKEYCTLISVHFPRWLYWGIPLNYLLIGFNC FELFLLFIPLAGFLILATGQVLVGDPSGFLHTVSAIFWGWIMTVFALSHAAWLLMLPT TNIQGGALLVLFLLALTESNDIAQYLWGKSCGRRKVVPKVSPGKTLEGLMGGVITIMI ASLIIGPLLTPLNTLQALLAGLLIGISGFCGDVVMSAIKRDIGVKDSGKLLPGHGGLL DRIDSLIFTAPVFFYFIRYCCY" gene complement(25257..25862) /gene="ynbA" /locus_tag="E4K55_RS22395" /old_locus_tag="E4K55_22845" CDS complement(25257..25862) /gene="ynbA" /locus_tag="E4K55_RS22395" /old_locus_tag="E4K55_22845" /EC_number="2.7.8.-" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_415926.4" /GO_component="GO:0005886 - plasma membrane [Evidence IEA]" /GO_function="GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0016780 - phosphotransferase activity, for other substituted phosphate groups [Evidence IEA]" /GO_process="GO:0008654 - phospholipid biosynthetic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="CDP-alcohol phosphatidyltransferase family protein" /protein_id="WP_000177515.1" /translation="MTLYQIKPLFQSLLRPTMFWLYKHHVTANHITLAALALSLLTGL LLMLAAQPILFLLLPIVLFIRMALNALDGMLARECNQQTRLGAILNETGDVISDIALY LPFLFLPESNASLVILMLFCTILTEFCGLLAQTINGVRSYAGPFGKSDRALIFGLWGL AVAIYPQWMQWNNLLWSIASILLLWTAINRCRSVLLMSAEI" gene complement(26033..28339) /gene="ydbD" /locus_tag="E4K55_RS22400" /old_locus_tag="E4K55_22850" CDS complement(26033..28339) /gene="ydbD" /locus_tag="E4K55_RS22400" /old_locus_tag="E4K55_22850" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_415925.2" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DUF2773 domain-containing bactofilin" /protein_id="WP_000471510.1" /translation="MFKARNCGWIRLLPLFMLSLPVQAELRCVANAVDIESFFSAATA EDKQQVEQAINSSVNLVPFGLSASNWKVHRGDLVVEGNIESNQKLIVLGNLTVKGNIS TFSLSNPWVILGNVTATNIVADSPLLITGSINASGLVFIDSYYDNPSTIKGSINARGI FINDIIAPVVASSTNSEFMVRASDKHDTENVKKALMIINPDAYYWGLINDEDALKEIF KRSNIRMAGNVCNQMKKEALFRPKPSPELVQELQMLDEGKVAAFEGRDIATFDLAVMR TLPRLKGISANLRKQLINSNDEQTIESMARYMPDNEILELTDQQLGYQPVVLGLLDRE PLSVEIMTRMSRLPDGVGPLNLALRENLPLDIVMTLAKRDWDMIIQELYKDAWLLPES IIDGYIRSDDSSIRQVGAGGQLTYNQAMQLANDSSNNVVTSLAFKLAEMKHHGQLLRM TPQESDKVAGYLYQKFENDDDLIRVLFLALPDNLQFNFVKRMEKKSPAYFCCRDMQVI HSDAALQRLLTRFNDPEGWSNLAKNQYLSTSMKQKIWQRALSHRKNNPKADSDAYETS ADMILSELISHGEVDDQMLLNATALIRSDDWDFLESALISWDNLPAVVLKELQQNTPR NDIWAKFFLRQENSSRAQVDEALRVYYALDPDALAQLDVLAKQPDRIWWSTLAKSNLT FFKFGALNNRHTPPAVLAAEIDPEWWIVAMNNPRFPVDVLKARLKRDPLLALELVNPE LDLVRQLALNGKTRAIREQAMRKLDELY" gene complement(28402..29262) /gene="pdxI" /locus_tag="E4K55_RS22405" /old_locus_tag="E4K55_22855" CDS complement(28402..29262) /gene="pdxI" /locus_tag="E4K55_RS22405" /old_locus_tag="E4K55_22855" /EC_number="1.1.1.65" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_415924.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="pyridoxine 4-dehydrogenase" /protein_id="WP_000097801.1" /translation="MSSNTFTLGTKSVNRLGYGAMQLAGPGVFGPPRDRHVAITVLRE ALALGVNHIDTSDFYGPHVTNQIIREALYPYSDDLTIVTKIGARRGEDASWLPAFSPA ELQKAVHDNLRNLGLDVLDVVNLRVMMGDGHGPAEGSIEASLTVLAEMQQQGLVKHIG LSNVTPTQVAEARKIAEIVCVQNEYNIAHRADDAMIDALAHDGIAYVPFFPLGGFTPL QSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENMAAEKLHLSEEV LSTLDGISRE" gene complement(29470..35328) /locus_tag="E4K55_RS27615" CDS complement(29470..35328) /locus_tag="E4K55_RS27615" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001271504.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="autotransporter outer membrane beta-barrel domain-containing protein" /protein_id="WP_023150037.1" /translation="MPWLSTGAAALITALAVVELNDDDDHHHRNNSPLPPTPPDDESD DTPVPPTPGGDEIIPDDPDDTPTPPKPVSFNNDVILDKTEKTLTIRDSVFTYTENADG TISLQDSNGRKATINLWQIDEANNTVALEGVSADGATKWQYNHNGELVITGDNATVNN NGKTTVDGKDSTGTEINGNNGKVIQDGDLDVSGGGHGIDITGDSATVDNKGTMTVTDP ESMGIQIDGDKAIVNNEGESTITNGGTGTQINGDDATANNNGKTTVDGKDSTGTEING NNGKVIQDGDLDVSGGGHGIDITGDSATVDNKGTMTVTDPESIGIQVDGDQAVVNNEG ESAITNGGTGTQINGDDATANNNGKTTVDGKDSTGTEIAGNNGKVIQDGDLDVSGGGH GIDITGDSATVDNKGTMTVTDPESIGIQIDGDQAIVNNEGESTITNGGTGTQINGNDA TANNSGKTTVDGKDSTGTKIAGNIGIVNLDGSLTVTGGAHGVENIGDNGTVNNKGDIV VSDTGSIGVLINGEGATVSNTGDVNVSNEATGFSITTNSGKVSLAGSMQVGDFSTGVD LNGNNNSVTLAAKDLKVVGQKATGINVSGDANTVNITGNVLVDKDKTADNAAEYFFDP SVGINVYGSDNNVTLDGKLTVVSDSEVTSRQSNLFDGSAEKTSGLVVIGDGNTVNMNG GLELIGEKNALADGSQVTSLRTGYSYTSVIVVSGESSVYLNGDTTISGEFPLGFAGVI RVQDKALLEIGSGATLTMQDIDSFEHHGTRTPELTYADSGAKIVNKGTVEIQNLGFAF VTGENTTGINSGTISLLQNGKDPAPSPIVLLATNGGSATNAGTITGKVTEQHSVFNKY STGTSNSFIFNNDVSSITGLVAQSNSTIINTDSGIIDLYGRGSVGMLAIADSTAENQG KITLDSMWVDANDTTAMRDIASNSAIDFGTGVGVGTDSYSGAGKNATAINQLGGVITI YNAGAGMAAYGASNTVINQGTINLEKNDNYDDSLAANTLVGMAVYEHGTAINDQTGVI NINVGTGQAFYNDGTGTIVNYGTICTFGVCQSGNEYNNTDDFTSLIYTGGDTITRSGE TVTLNKSAAVTDKLAGNVVNSGTLSGDQITVSSGLLENTSGGIINNLVKLDKGAVIKN AGVMTNNVDVSGGILNNAGEMTAQITMNAGADSSLVNNTGTINKIVQNAGVFNNSGSV TGRMMSAGGVFNNQTDGAIMRGAALTGTAVANNEGTWNLGSSSEGNNTGMLEVNNNSA FNNRGEFILDNDKNAVHINQSGTLYNTGHMNISNSSHNGAVNMWGGNGRFINDGTIDV SAKSLVVSANNAGDQNAFFWNQDNGVINFDHDSASAVKVTHSNFIAQNDGIMNISGTG AVAMEGDKNAQLVNNGTINLGTAGTTDTGMIGMQLDANATADAVIENNGTINIFANDS FAFSVLGTVGHVVNNGTVVIADGVTGSGLIKQGDSINVEGMNGNNGNSSEVHYGDYTL PDVPKPNTVSVTSGSDEAGGSMNNLNGYVVGTNVNGSAGKLKVNNASMNGVEINTGFT AGTADTTVSFDNVVEGSNLTDADAITSTSVVWTAKGSTDASGNVDVTMSKNAYTDVAT DASVNDIAKALDAGYTNNELFTSLNVGTTAELNSALKQVSGSQATTVFREARVLSNRF SMLADAAPKVGNGLALNVVAKGDPRAELGNNTEYDMLALRKTIDLSESQTMSLEYGIA RLDGDGAQKAGDNGVTGGYSQFFGLKHQMSFDNGMNWNNALRYDVHNLDSSRSIAFGN TNKTADTDVKQQYLEFRSEGAKTFEPSEGLKVTPYAGVKLRHTLEGGYQERNAGDFNL NMNSGSETAVDSIVGLKLDYAGKDGWSASATLEGGPNLSYAKSQRTASLAGAGSQHFN VDDGQKGGGINSLTSVGVKYSSKESSLNLDAYNWKEDGISDKGVMLNFKKTF" CONTIG join(SQQY01000043.1:1..35538) //
Whole sequence (abbreviated view) Selected region from: to:
All features Gene, RNA, and CDS features only
Show sequence Show reverse complement Show gap features
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