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NCBI Reference Sequence: NZ_QBHE01000051.1
FASTA Graphics
LOCUS NZ_QBHE01000051 22851 bp DNA linear CON 18-SEP-2024 DEFINITION Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain F65H2 NODE_51_length_22851_cov_18.5924, whole genome shotgun sequence. ACCESSION NZ_QBHE01000051 NZ_QBHE01000000 VERSION NZ_QBHE01000051.1 DBLINK BioProject: PRJNA224116 BioSample: SAMN08897992 Assembly: GCF_003067245.1 KEYWORDS WGS; RefSeq. SOURCE Salmonella enterica subsp. enterica serovar 4,[5],12:i:- ORGANISM Salmonella enterica subsp. enterica serovar 4,[5],12:i:- Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (bases 1 to 22851) AUTHORS Gonzalez,S., Vinasco,J., Marino-Ramirez,L. and Norman,K.N. TITLE Salmonella enterica WGS JOURNAL Unpublished REFERENCE 2 (bases 1 to 22851) AUTHORS Gonzalez,S., Vinasco,J., Marino-Ramirez,L. and Norman,K.N. TITLE Direct Submission JOURNAL Submitted (10-APR-2018) NCBI / NLM, NIH, 8600 Rockville Pike, Bethesda, MD 20894, USA COMMENT REFSEQ INFORMATION: The reference sequence is identical to QBHE01000051.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: SPAdes v. 3.5 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 100.0x Sequencing Technology :: Illumina MiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_003067245.1-RS_2024_09_18 Annotation Date :: 09/18/2024 04:55:43 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.8 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,953 CDSs (total) :: 4,828 Genes (coding) :: 4,682 CDSs (with protein) :: 4,682 Genes (RNA) :: 125 rRNAs :: 8, 8, 15 (5S, 16S, 23S) complete rRNAs :: 8, 1 (5S, 16S) partial rRNAs :: 7, 15 (16S, 23S) tRNAs :: 80 ncRNAs :: 14 Pseudo Genes (total) :: 146 CDSs (without protein) :: 146 Pseudo Genes (ambiguous residues) :: 0 of 146 Pseudo Genes (frameshifted) :: 35 of 146 Pseudo Genes (incomplete) :: 125 of 146 Pseudo Genes (internal stop) :: 15 of 146 Pseudo Genes (multiple problems) :: 27 of 146 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..22851 /organism="Salmonella enterica subsp. enterica serovar 4,[5],12:i:-" /mol_type="genomic DNA" /submitter_seqid="NODE_51_length_22851_cov_18.5924" /strain="F65H2" /serovar="4,[5],12:i:-" /isolation_source="swine" /sub_species="enterica" /db_xref="taxon:440524" /geo_loc_name="USA: TX" /lat_lon="30.63 N 96.33 W" /collection_date="2015-12-04" /collected_by="USDA in College Station, TX" gene complement(<1..551) /locus_tag="DBP69_RS23660" /old_locus_tag="DBP69_23660" CDS complement(<1..551) /locus_tag="DBP69_RS23660" /old_locus_tag="DBP69_23660" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_461524.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="prophage tail fiber N-terminal domain-containing protein" /protein_id="WP_001741572.1" /translation="MPVLISGVLKDGTGTPVQNCTIQLKACRTSTTVVVNTVASENPD DAGRYSMDVEQGQYTVTLLVEGYPPSHAGVITVYDDSKPGTLNDFLGAMTEDDVRPEA LRRFEAMVEEVARQASEASRNATAAGQASEQAQTSAGQAAESATAAVNAAGAAEASAT QAASSAASAESSAGTATTKAGEAS" gene complement(605..847) /locus_tag="DBP69_RS23665" /old_locus_tag="DBP69_23665" CDS complement(605..847) /locus_tag="DBP69_RS23665" /old_locus_tag="DBP69_23665" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_000178849.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_000178853.1" /translation="MTMSRVISLAAGVSLSVLFSTAAVADNGRGSGNSNIENQTRIYT GTDRGQKQHREAKGQIITRSVQCSLPAYLRDPDNQC" gene complement(886..4248) /locus_tag="DBP69_RS23670" /old_locus_tag="DBP69_23670" CDS complement(886..4248) /locus_tag="DBP69_RS23670" /old_locus_tag="DBP69_23670" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_461525.2" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="host specificity protein J" /protein_id="WP_000514917.1" /translation="MGKGGGKGHTPREAPDNLKSTQLLSVIDAISEGPIEGPVNGLQS VLVNQTPVVDRDGNTNIHGVKVVYRVGEQEQTPLEGFESSGAETVLGVQVKYDNPVTR TITAANIDRLRFTFGVQSLVEANSKGDRNPTSVRLQIHLERYGQWVVEKEITITGKTT TQYLASVIVDNLPPRPFGIRMVRVTADSTTDQLQNNTVWSSYTEIIDVRQRYPNTAVI GLQVESEQFGSQQVTRNYHFFGRIIHVPSNYDPVARTYSGIWDGTFKPAYSNNPAWCL WDVLTHPRYGMGQRIGAADVDRWALYAIGQYCDQMVPDGFGGTEPRMTFNAYLAQQRK AWDVLTDFCSAMRCMPVWNGQMMTFVQDRPSDTVWTYTRSNVVMPDEGTPFRYSFSAR KDRHNAVEVNWIDPDNGWQTSTELVEDTVAISHYGRNLVKMDAFGCTSRGQAHRAGLW LIKTELLETQTVDFSVGAEGLRHVPGDVIEVCDEDYAGISLGGRILSVDRARRILTLD REITLPSSGTTLISLMDGEGLPVSVDVQSVTDGVQVQVSRIPDGVAEYSVWGLKLPSL RQRLFRCVAVRENDDGTYAITAVQHVPEKESIVDNGASFDPQPGTIHGTVPPAIQHLT TEILAEEGQYQVLARWDTPRVVKGASFSLRLNVAAEDGSDRLVSSAGTPDTQYRFRGL TPGRYTLSVRAVNSQGQQGDPASTQFSISAPAAPSFIELTPGYFQITATPRQAVYDPT VQYEFWFSDAQITDIHQVENAARYLGTALYWIAASVNIRPGRDYYFYIRAVNQVGKSA FVEATGQASNDAAGYLDFFKGQITESHLGKELLEKVELTEDNASKLQQFSKEWQDAND KWNAMWGVKIEQTKDGKYYVAGLGLSMEDMPDGKISQFLVAADRIAYINPANGNETPG FVMQGDQIIMNEAFLKYLSAPTITSGGNPPAFSLTPDGKLTAKNADISGHINAVSGSF TGEINATSGKFSGVIEAREFVGDICGSKVMQGVSIRETNDERSTSTRYTDSATYQIGK TITVMANCERNGGSGAITVTININGQVKTAEVIPYTAGLPAMYQTVVFSVYTTSPVVD ISVSLRVRGQYTTSASVWPLVMVSRSGNNFTN" gene complement(4310..4957) /locus_tag="DBP69_RS23675" /old_locus_tag="DBP69_23675" CDS complement(4310..4957) /locus_tag="DBP69_RS23675" /old_locus_tag="DBP69_23675" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_461526.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="tail assembly protein" /protein_id="WP_000246126.1" /translation="MATTHALHLATPGMARICLYGDLQRFCRRVSLQVASGAEAVRAL AVQLPGLRQKLNDGWYQVRIAGDDVTADTLTTSLHDPLPPGAVIHIVPRLGGAKSGGV FQAVLGAALIAVAWWNPAGWLGAAAVSGMYMTGASMVLGGVAQMLAPKPKMSEMRQTD NGRQNTYFSSLDNMVANGNTLPVLYGEMQVGSRVISQEVSTADEGDGGQVVVIGR" gene complement(4855..5592) /locus_tag="DBP69_RS23680" /old_locus_tag="DBP69_23680" CDS complement(4855..5592) /locus_tag="DBP69_RS23680" /old_locus_tag="DBP69_23680" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_000662739.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="C40 family peptidase" /protein_id="WP_000662739.1" /translation="MKEQDILAHARRCAPAESCGFVVRTQAGERYLPCVNISAAPEDY FRMAPEDWLRAETQGDIVALVHSHPGGQPYLSDVDRRLQVQSDLPWWLVCAGQVHKFR CVPHLTGRHYKHGVFDCYTLFRDAYHLAGIDMPDFHRDDDWWRHGDNLYLDNLETTGF YRVSAASAQPGDVLICCFGSSVPNHAAIYCGDGELLHHIPEQLSKRERYTDKWQRRTH SIWRHRAWRASAFTGICNDFAAASACR" gene complement(5599..6297) /locus_tag="DBP69_RS23685" /old_locus_tag="DBP69_23685" CDS complement(5599..6297) /locus_tag="DBP69_RS23685" /old_locus_tag="DBP69_23685" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_461528.1" /GO_component="GO:0030430 - host cell cytoplasm [Evidence IEA]" /GO_function="GO:0051536 - iron-sulfur cluster binding [Evidence IEA]" /GO_process="GO:0046718 - symbiont entry into host cell [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="phage minor tail protein L" /protein_id="WP_001152689.1" /translation="MQDISQDTLNESAKLAQSARITLWEIDLTQSGGDRYFFCNEANE KGEAVTWQGRKYDVYPVDGCGFEMNGKGAAARPSLKVSNLYGMVTGMVEDLHSLVGAT VIRRIVYARFLDAVNFQNGNQEADPEQESVSRWVIEQCSDLTAVSATFVLATPTETDG CVFPGRIMLANTCTWIYRSDECGYTGPAVADEFDNPTADPAKDACSRCARGCALRNNT GNFGGFLSINKLSQ" gene complement(6307..6636) /locus_tag="DBP69_RS23690" /old_locus_tag="DBP69_23690" CDS complement(6307..6636) /locus_tag="DBP69_RS23690" /old_locus_tag="DBP69_23690" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_461529.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="phage tail protein" /protein_id="WP_000447369.1" /translation="METFNWKIRPDMTVESEPKVTSIKLGDGYEQRRPAGLNNHLAKY NVTVRIRKGEHQNLEAFLSRHGGVKSFLWTPPYTWTQIRVICRKWSINVGSLWVTVTT TFEQVVI" gene complement(6639..9734) /locus_tag="DBP69_RS23695" /old_locus_tag="DBP69_23695" CDS complement(6639..9734) /locus_tag="DBP69_RS23695" /old_locus_tag="DBP69_23695" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_461530.1" /GO_component="GO:0044423 - virion component [Evidence IEA]" /GO_function="GO:0005198 - structural molecule activity [Evidence IEA]" /GO_process="GO:0016032 - viral process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="phage tail tape measure protein" /protein_id="WP_000372065.1" /translation="MDQIANLVIDLSIDSAEFRNEVPRIKKLLNDAAGDSERSAARMQ RFLDKQTEATRRTSASLDQVTASSTAYSSAVEKSAAASTRLAADVDQTRQRVEALGRK LREEQAQSAAVAAAQDRTSAAFYRQIDSVKQLSGGLQELQRIQAQVRQAKGRGDISQG DYLALVSETARKTRELTDAEALATQKKAQFIRRLKEQTTVQGLSRTELLRVKAAELGV SSAADIYIRKLERTGTATHTLGLKSAAARRELGVLAGELARGNFGALRGSGITLANRA GWIEQLMSPKGMMLGGLAGGVAAAVYGLGKAYYEGAKESETFNKQLILTGSYAGKTTG QLNAMAKSLAGNGVTQHDAAGVLAQVVGSGAFTGQAMAMVSRTATRMQENVGQSVDET IRQFKRLRDDPVNAAKELDRTLHFLTATQLEQIRVLGEQGRVADAAKIAMSAYSEEMN KRMGDVHDNLGWIERAWNAVGDAAKWAWDRMLDIGREDTLDEKIATLQEKIARDRKTP WTVSSSQTEYDQQQLNELQEQKRQKDLLDAKAQAERNYQETQKRRNEQNAALNRDNET ESLRHQREVARITAMQYADAAVRNAALERENERHKKALSQQAKKPKTYHNDEARRLLL QYSQQQAQTEGQIAAAKLSTTEKMTEAHKQLLSFQQRIADLSGKKLTADEQSVLAHKD EIALALQKLDISQQDLQHQNALNELKKKTLTLTSQLADEESRVRQQHAMALATMGMGD QQRGRYEERLKIQQHYQEQLEQLKRDSKAKGTYGSDEYRQAEQALKGSLDRRLAEWAD YNAKVDAAQGDWTLGASRALDNFLAQGGNVAGMTENVFTNAFNGMADSIANFAVTGKG SFRSLTVSILADLAKMEARIAASKLLGSVLAMFGFGTSAGGSTPSGAYSSAALSVIPN ADGGVYRSAGLSQYSGSIVNRPTFFAFAKGAGVMGEAGPEAILPLRRGADGKLGVVAA GSGGMAMFAPEYNIEIHNDAGNGQIGPQALQAVYNIGKKAAIDFWQQQSRDGGIAGGG R" gene complement(9706..10044) /locus_tag="DBP69_RS23700" /old_locus_tag="DBP69_23700" CDS complement(9706..10044) /locus_tag="DBP69_RS23700" /old_locus_tag="DBP69_23700" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_461531.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="phage tail assembly protein T" /protein_id="WP_010989052.1" /translation="MNRELAFVMRLAREFRRPDWRQMLAEMSATELGEWAEHFGKNSF SDMLLDAEFATLKSLISGLVTGTHHDAEMFSLITDPESLHEKTDDELMILGEGITGGV RYGPDSEPGH" gene complement(10041..10436) /gene="gpG" /locus_tag="DBP69_RS23705" /old_locus_tag="DBP69_23705" CDS complement(10041..10436) /gene="gpG" /locus_tag="DBP69_RS23705" /old_locus_tag="DBP69_23705" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_461532.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="phage tail assembly chaperone G" /protein_id="WP_000479607.1" /translation="MFLNTDTFNYGGHSIVLSELSALQRVDYLKFIQQRTADYDAQPE TLTEAERQTEFMQMGVDINAWLVSRSLCESKKEEEARALYESVRLEWSYEALGRGADM VLSLSGMRLPASQEDDSGSEKDTTTPEKS" gene complement(10487..11233) /locus_tag="DBP69_RS23710" /old_locus_tag="DBP69_23710" CDS complement(10487..11233) /locus_tag="DBP69_RS23710" /old_locus_tag="DBP69_23710" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_461533.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="phage tail tube protein" /protein_id="WP_077248250.1" /translation="MMGTPNPLVKTKGAGTTFWLYTGSGDAFKNPLADDDWLRLAGIK DLQPGEMSADAEDDDYLDDENADWKSTTQGQKSIGDTTATLAWKPGETGQKKLVELFD TGEVRAFRIRYPNGTVDVFRGWLSSLGKTVTSKEVMTRSVKITGVGRPSLAEEDTPDV VSVSGVTVAPASATVAAGATTTLTFTVKPDNASDKTLQVATADPLIATVTLKDNVATV KGVKAGSVNIVGISSDGSLVAVAAVTVTAS" gene complement(11241..11642) /locus_tag="DBP69_RS23715" /old_locus_tag="DBP69_23715" CDS complement(11241..11642) /locus_tag="DBP69_RS23715" /old_locus_tag="DBP69_23715" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_461534.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="phage minor tail U family protein" /protein_id="WP_000033885.1" /translation="MSKHTLIRRAVLEKLESVTGAPVTLFDGLPAFVEQEDLPAIAVW LTDAQYTGLMTDEDDWQATLHTAVFLRAQAPDTELDIWMEEKIFPALEEVSGLERLID TMTPLGYDYQRDSEMATWGMAEITYRITYTN" gene 11751..12881 /locus_tag="DBP69_RS23720" /old_locus_tag="DBP69_23720" CDS 11751..12881 /locus_tag="DBP69_RS23720" /old_locus_tag="DBP69_23720" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_000817271.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="RNA-guided endonuclease TnpB family protein" /protein_id="WP_000817263.1" /translation="MKRAYKYRFYPTTEQAELLAQTFGCVRFVYNSILRWRTDAYYER KEKIGYLQANARLTALKKEPEFAWLNDVSCVPLQQSLRHQQTAFANFFAGRAAYPAFK SKRHKQAAEFTASAFKYRDGKLYMAKNKIPLDVRWSRPLPSVPSTVTISKDAAGRYFV SCLCEFEPASLPITSSMVGIDVGLKDLFVTDTGFRSGNPRHTAKYAARLALLQRRLSK KAKGSKNRAKAHLKVARLHAKIADCRLDALHKATRKLINDNQVVCVESLKVRNMIRNP SLSKAIADASWGELVRQLRYKGEWAGRSVVAIDQFFPSSKRCSCCGFIMKKMPLDVRK WQCPECGTDHDRDVNAARNIKAAGLAVLAHGEPVNPESLKAA" gene complement(12930..13508) /locus_tag="DBP69_RS23725" /old_locus_tag="DBP69_23725" CDS complement(12930..13508) /locus_tag="DBP69_RS23725" /old_locus_tag="DBP69_23725" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_461536.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="phage tail protein" /protein_id="WP_000677089.1" /translation="MKGLENAIRNLNSLDRQMVPRASIWAVNRVAQKAVSVATRKVAR ETVAGDNQVRGLPLKLVRQRVRLFKAGTDGKRSARIRINRGNLPAIKLGAAQVRMSKR RGKLLYRGSVLKIGPYLFRDAFIQQLANGRWHVMRRVNGKNRYPIDVVKIPLSGPLTQ AFESATQSLIDEEIPKQLGYALKQQLRLYLSR" gene complement(13536..13919) /locus_tag="DBP69_RS23730" /old_locus_tag="DBP69_23730" CDS complement(13536..13919) /locus_tag="DBP69_RS23730" /old_locus_tag="DBP69_23730" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_461537.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="head-tail joining protein" /protein_id="WP_000083294.1" /translation="MSQSENLFDTAISQADDAILRVMGTVATITSGVLAGATLTGVFD DPESVSYAAGGVRIEGDKPTFFVKTSLTVHLKRPDTLTILGDTFWVDRITPAGGDSSI ILLGRGTPPTDNRRRTGGMFDCSPA" gene complement(13930..14289) /locus_tag="DBP69_RS23735" /old_locus_tag="DBP69_23735" CDS complement(13930..14289) /locus_tag="DBP69_RS23735" /old_locus_tag="DBP69_23735" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_461538.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DNA-packaging protein FI" /protein_id="WP_000201486.1" /translation="MATKEENIQRLRELATRLGRDPDVSGSAAELSQRVMEWEEEAEA EHLPAVENDSDESIVPPGIGQRSERVLIRALRTLHICAIDPDSNRELDMVMAGNPARI SQHDVDELIAAGLIIEL" gene complement(14347..15375) /locus_tag="DBP69_RS23740" /old_locus_tag="DBP69_23740" CDS complement(14347..15375) /locus_tag="DBP69_RS23740" /old_locus_tag="DBP69_23740" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_461539.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="major capsid protein" /protein_id="WP_000522566.1" /translation="MGLFTTRQLLGYTEQKVKFNPLFLSLFFRRTVTFPTQEVMLDKI TGKTPIAAYVSPVVGGKVLRNRGGETRVLRPGYVKPKHEVNYAQVVERLPGEDPARLN DPAYRRLRILTDNLKQEEKAIVQVEEMQAVSAVLNGKYTMQGEQFDTVEVDFGRSAGN NIIQATGKKWSEQDRETFDPTYDLDMYCDQASGLINIAVMDGKVWRLLNGFKLFREKL DTRRGSNSQLETAVKDLGAVVSFKGYYGDLAIVVAKTSYVADNGTEKRYLPEGTLVLG NTAAEGIRCYGAIQDSQALAEGIVAATRYPKHWLTVGDPANEYTMTQSAPLMVLPDPD EFVIVTVG" gene complement(15430..15777) /locus_tag="DBP69_RS23745" /old_locus_tag="DBP69_23745" CDS complement(15430..15777) /locus_tag="DBP69_RS23745" /old_locus_tag="DBP69_23745" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_461540.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="head decoration protein" /protein_id="WP_000011260.1" /translation="MSFTTTIEKRADNRIFAGNDPAHTATGVSGITAATPMLTPLMLD DTTGKLVAWDGQKAGTAVGVLALELDGSENLLTYWKSGTFATESLAWPKSVDAIKQAN AFAGSAVSHAALP" gene complement(15790..17286) /locus_tag="DBP69_RS23750" /old_locus_tag="DBP69_23750" CDS complement(15790..17286) /locus_tag="DBP69_RS23750" /old_locus_tag="DBP69_23750" /EC_number="3.4.21.-" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_461541.1" /GO_function="GO:0008233 - peptidase activity [Evidence IEA]" /GO_process="GO:0006508 - proteolysis [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="S49 family peptidase" /protein_id="WP_001189503.1" /translation="MQRNLSHIISQATSAPLLLEPAYARVFFCALGRESGINSLHIPG NNESLDQSDMALVTGDFMATGKPQARFYQVVNGIAVLPVTGTLVHKLGGMRPFSGMTG YDGVTARLQQAVSDPEVKGILLDIDSPGGQAAGAFDCADMIYRMREQKPVWALANETA CSAAMLLAAACSHRLVTQTSRMGSIGVVMAHTSYAEKLKQEGIDITLIYSGAHKADLT PSQKLPESVYADYQQRMDEARKMFAEKVARYTGLSVDAVMATEAAVYDGQAIITTGLA DGMVNAADAIGVMAEAINSNKTGGTMPELSAADAVTQENQRVMGILGCPEARGHEALA QMLAGQPGMSVAQAKSILAAAAPADTTSTADRILALEEAGGRETLAQTLAAMPEMTVE QARTILAASPIAAATSLHDAVMALDEAKGREELAEKLAVMPGMTTDQARDLLAAAPDK SGNAGLSMNNAFDAFMQSHSPGPISGGKGHSNDTETTLLMSIPGTSAT" gene complement(17276..18856) /locus_tag="DBP69_RS23755" /old_locus_tag="DBP69_23755" CDS complement(17276..18856) /locus_tag="DBP69_RS23755" /old_locus_tag="DBP69_23755" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_461542.1" /GO_component="GO:0044423 - virion component [Evidence IEA]" /GO_function="GO:0005198 - structural molecule activity [Evidence IEA]" /GO_process="GO:0019068 - virion assembly [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="phage portal protein" /protein_id="WP_000831821.1" /translation="MKRTPVLVDVHGTPLRESLGYTGGGIGFGGQMADWMPPAESVDA ALLPSLRLGNARADDLVRNNGIAANAVALHKDHIVGHLFLISYRPNWRYLGMRESAAK SFVDEVEAAWTEYCDGIFGEMDAEGKRTFTEFIREGVGVHAFNGEIFLQPVWDAETTQ VFRTRFKAVSPKRVDTPGYARGNRQLRAGVETDRNGKALAYHVCDDDWPVAGGERWTR IPRFLPSGRPAMLHIFEPVEDGQTRGANQFYSVMERLKMLDTLQATQLQSAIVKAMYA ATIESELDSEKAFEYITAADNKDTPLVNMLANYARYYSTNSIKLGGVKIPHLYPGDEL NLQTAQDSDNGFSALEQALLRYIAAGLGVSYEQLSRDYSQVSYSSARASANESWRYFL GRRRFIAGRLATQMFSCWLEEALIRGVIRAPRARFSFWEARSSWSRSEWIGAGRMAID GLKEVQESVMRIEAGLSTYEKELAIMGEDYQEIFRQQVRESEERRAAGLSRPVWITDT YQQQIAASRQTEEEKRAT" gene complement(18853..19056) /locus_tag="DBP69_RS23760" /old_locus_tag="DBP69_23760" CDS complement(18853..19056) /locus_tag="DBP69_RS23760" /old_locus_tag="DBP69_23760" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_461543.1" /GO_process="GO:0019058 - viral life cycle [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="phage head-tail joining protein" /protein_id="WP_000201415.1" /translation="MATITELQEARVALHDLMTGKRVATVQKDGRRVEFTATSVGDLK KYVAELEASLCNGRRRAPVGVRL" gene complement(19040..20971) /locus_tag="DBP69_RS23765" /old_locus_tag="DBP69_23765" CDS complement(19040..20971) /locus_tag="DBP69_RS23765" /old_locus_tag="DBP69_23765" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_461544.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="phage terminase large subunit family protein" /protein_id="WP_000623091.1" /translation="MISGERRANNANRAITNGLIALHIPVPLTTVQWADEYYYLPKES SYTPGKWETLPFQVAIMNAMGYELIRVVNLIKSARVGYTKMLLGVEGYFIEHKSRNSL LFQPTDSSAEDFMKSHVEPTIRDVPVLLELAPWFGRKHRDNTLTLKRFSSGVGFWCLG GAAAKNYREKSVDVVCYDELSSFEPDVEKEGSPTLLGDKRIEGSVWPKSIRGSTPKVK GSCQIEKAANESAHFMRFYVPCPHCGEEQYLKFGDGSTPFGLKWEKSKPETVYYLCEH NGCVIRQSELDQKAGRWICDNTGMWTRDGLAYFSASGEEVPPPRSITFHIWTAYSPFT TWIQIIYDWLDALKDPNGVKTFINTTLGEPYEEAVAEKLSHELLLEKVIHYAAPVPER VVYLTAGIDSQRNRYEMYVWGWAPGEEAFLIDKQIIMGRHDDEDTLQRVDAVINKKYR HADGTDISISRICWDIGGIDAEIVYKRSKKHGIFRVLPVKGASVYGKPVITMPKKRNQ SGVFLCEIGTDTAKEMLYARMGAVTAPADEATPYAIRFPDNPDVFTEVEAKQLVAEEL VEKLVNGKFRLLWDAKGRRNEALDCLVYASAALRVSVQRWQLDLEALATSRKSEEQDT PTLEQLAAMLAGGVNGNNH" gene complement(20943..21488) /locus_tag="DBP69_RS23770" /old_locus_tag="DBP69_23770" CDS complement(20943..21488) /locus_tag="DBP69_RS23770" /old_locus_tag="DBP69_23770" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_461545.2" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="terminase small subunit" /protein_id="WP_001102153.1" /translation="MNVNKKKLAEIFGCDVRTVTAWQSQGLPLVSGGGKGNEAVFDTA AAISWYAERDASIENEKLRKEVDDLRAAAESDLNPGTIDYERYRLTKAQADAQELKNA EREGLVLETELFTYILQRVAQEIAGILSRVPLVLQRKYPDLCQSHIDVVRTEIARASG RAATIADVEKWTDDFRRAQGE" gene 21775..22176 /gene="pliG" /locus_tag="DBP69_RS23780" /old_locus_tag="DBP69_23780" CDS 21775..22176 /gene="pliG" /locus_tag="DBP69_RS23780" /old_locus_tag="DBP69_23780" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_461546.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="g-type lysoyme inhibitor PliG" /protein_id="WP_000669690.1" /translation="MKFKSIAKTVFLFALLTSAGFATGKNVNVEFDKGQNSARYSGVI KGYDYDTYNFQARKGQKVHVSISNEGADTYLFGPGISDSVDLSRYSSELDGNGQYTLP ASGKYELKVLQTRNEARKNKAKKYSVNIQIK" gene complement(22412..22849) /locus_tag="DBP69_RS23785" /old_locus_tag="DBP69_23785" CDS complement(22412..22849) /locus_tag="DBP69_RS23785" /old_locus_tag="DBP69_23785" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_461547.3" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="lysis protein" /protein_id="WP_225734023.1" /translation="MLVSLIVAGRLANHYRNNAITYKYQRDTATHNLKLANETITDMT KRQRDVAALDAKYTKELADAQNRNTDLQRRLAAGSRVRVEGRCTVPTTTTTKTASTRR VGNAATVELSPVAGQNVLDIRAGIISDQEKLKYLQEYIRTQCK" CONTIG join(QBHE01000051.1:1..22851) //
Whole sequence (abbreviated view) Selected region from: to:
All features Gene, RNA, and CDS features only
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