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NCBI Reference Sequence: NZ_NVOF01000081.1
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LOCUS NZ_NVOF01000081 7277 bp DNA linear CON 23-AUG-2024 DEFINITION Bacillus pseudomycoides strain AFS095135 AFS095135_100_B5_Contig81_140514, whole genome shotgun sequence. ACCESSION NZ_NVOF01000081 NZ_NVOF01000000 VERSION NZ_NVOF01000081.1 DBLINK BioProject: PRJNA224116 BioSample: SAMN07598649 Assembly: GCF_002553115.1 KEYWORDS WGS; RefSeq. SOURCE Bacillus pseudomycoides ORGANISM Bacillus pseudomycoides Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group. REFERENCE 1 (bases 1 to 7277) AUTHORS Bleich,R.M., Grubbs,K.J., Santa Maria,K.C., Allen,S.E., Farag,S., Shank,E.A. and Bowers,A. CONSRTM Agbiome Team Llc TITLE Large-scale bioinformatics analysis of Bacillus genomes uncovers conserved roles of natural products in bacterial physiology JOURNAL Unpublished REFERENCE 2 (bases 1 to 7277) AUTHORS Bleich,R.M., Grubbs,K.J., Santa Maria,K.C., Allen,S.E., Farag,S., Shank,E.A. and Bowers,A. CONSRTM Agbiome Team Llc TITLE Direct Submission JOURNAL Submitted (01-SEP-2017) Chemical Biology and Medicinal Chemistry, UNC Chapel Hill, 125 Mason Farm Rd., Chapel Hill, NC 17599, USA COMMENT REFSEQ INFORMATION: The reference sequence is identical to NVOF01000081.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: CLC Assembly Cell v. 4.2.72 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 63.03x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_002553115.1-RS_2024_08_23 Annotation Date :: 08/23/2024 08:51:24 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.8 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 5,970 CDSs (total) :: 5,882 Genes (coding) :: 5,456 CDSs (with protein) :: 5,456 Genes (RNA) :: 88 rRNAs :: 1, 1 (16S, 23S) complete rRNAs :: 1, 1 (16S, 23S) tRNAs :: 81 ncRNAs :: 5 Pseudo Genes (total) :: 426 CDSs (without protein) :: 426 Pseudo Genes (ambiguous residues) :: 0 of 426 Pseudo Genes (frameshifted) :: 117 of 426 Pseudo Genes (incomplete) :: 339 of 426 Pseudo Genes (internal stop) :: 89 of 426 Pseudo Genes (multiple problems) :: 105 of 426 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7277 /organism="Bacillus pseudomycoides" /mol_type="genomic DNA" /submitter_seqid="AFS095135_100_B5_Contig81_140514" /strain="AFS095135" /isolation_source="plant leaf" /db_xref="taxon:64104" /geo_loc_name="USA: IN" /collection_date="2014-01-14" /collected_by="AgBiome" gene complement(<1..896) /locus_tag="CON69_RS25970" /old_locus_tag="CON69_25965" CDS complement(<1..896) /locus_tag="CON69_RS25970" /old_locus_tag="CON69_25965" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_016107982.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="N-acetylmuramoyl-L-alanine amidase family protein" /protein_id="WP_098716094.1" /translation="MKKAILPVLMSAMFVVPAVSHAENQEAVKQLTPKTEQAMQKTGW VKEGNTWYFYDQNSVKKTGWLKDNGTWYYLNADGAMKSNGWLSDAGKWYYFAESGAMK TGNIFNQGSCYLLGADGALYTNEGWVQYEGEWYYVHQGGNLHEGYLEYNGKIYYMNPG SGDMKVNNWIGSHPDGNYFLSDGAMATGWNLINNEWYYFEESRTHFNTHNGWLSYKGS WYYFVASKMKTGWIEDNGNWYYLNADGTMKTGWLKDKGTWYYLNANGTMKSSANGWDE GWLDEGGKRYVFADSGAMWTGK" gene complement(1289..1963) /locus_tag="CON69_RS25975" /old_locus_tag="CON69_25970" CDS complement(1289..1963) /locus_tag="CON69_RS25975" /old_locus_tag="CON69_25970" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_003209947.1" /GO_process="GO:0000160 - phosphorelay signal transduction system [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="response regulator transcription factor" /protein_id="WP_003209947.1" /translation="MKTIKKIRIMLVDDQPIIRQGLTYIFNSQSDMEVVGEADNGKDA VKIVLRCIPDIVLMDVQMPQATGIDATRNIVQSLPDTKIILLTTFDVQDYVFDGIRAG AAGYLLKDTQTKELLDGVRSIQRGATLYNSMTAKQALAKIINSRDNISTNQPKASSFI EPLTDREIEILQLIAYGKKNKEIANILYISEGIVKTHVHNINQKLEVTDRTQAVVLGI CMQLVR" gene complement(1982..2266) /locus_tag="CON69_RS25980" /old_locus_tag="CON69_25975" CDS complement(1982..2266) /locus_tag="CON69_RS25980" /old_locus_tag="CON69_25975" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_018768121.1" /GO_function="GO:0005524 - ATP binding [Evidence IEA]; GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="sensor histidine kinase" /protein_id="WP_003204416.1" /translation="MFRILQESITNVIRHSGANEVDVCIQEHAQELSLIVSDNGQFLS GNLYQNGFGVKGMIERCQSVGGTCNFSVNSDGGLKVEAIIPLMNRVCDEA" gene 2722..4962 /locus_tag="CON69_RS25985" /old_locus_tag="CON69_25980" CDS 2722..4962 /locus_tag="CON69_RS25985" /old_locus_tag="CON69_25980" /EC_number="7.-.-.-" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002189720.1" /GO_component="GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]" /GO_function="GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein" /protein_id="WP_098716093.1" /translation="MLKIIKHLKPFVASIIAVICLLSIQAVCDLSLPDYMSNIVNVGI QQKGVENAVPGVIRKSELDKLKLFMNENEKKKVDDNYILLDKNNLSQSELKNDLKDYP QLDKEPLYKLHTEDKNTINELNDIFGKPMLITQGIEKGGSSAFTAPGDNKAPAKLPPN TDPFAVIAKLPQDQIDAMKEKADEKFKNMPGSMVTQSAVSFIENEYKKIGINTDKLQS NYILTSGGKMLLLSLVSMAATVIVSLLAAKVAAGLGRDLRKKVFRKVTSFSNAEFDKF STASLITRSTNDIQQVQTLMVMLLRIVFYAPILGIGGIIKVLTTDLSMGWIIAVAVIA ILSLVIGLFSIAIPKFKSIQKLVDKINLITRESLTGMLVIRAFNNQKHEEKKFEKGNQ DLTRTNLFVSRLMSFMMPMMMLIMNAVTVLIIWVGSHQVDMGHMQVGDMMAFMQYTMQ IIMAFLMISMVSIMVPRASVSAQRIAEVLDTDLSIHDAAEPKTFASDKKGYVEFKNVS FKYPGAEEDVLSNITFTAKPGETTAFIGSTGSGKSTLINLIPRFYDVTSGQILIDGTD IREVSQKELREKIGYVPQKGVLFSGTIESNLKYGKKEATEEELAKAAEIAQAMEFINA KSESFRTEISQGGTNVSGGQKQRLSIARALTKKSEIFIFDDSFSALDFKTDAALRRAL NNEIAGSTILLVAQRISTIMNADKIIVLDKGKIVGTGTHEELMENCEVYKQIALSQLS REELSS" gene 4959..6824 /locus_tag="CON69_RS25990" /old_locus_tag="CON69_25985" CDS 4959..6824 /locus_tag="CON69_RS25990" /old_locus_tag="CON69_25985" /EC_number="7.-.-.-" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002165711.1" /GO_component="GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]" /GO_function="GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein" /protein_id="WP_098623328.1" /translation="MSDRKIEHNRQGGHGGGHMGGGMRKIEKAKNFKGTMNKLLQYLK PYKFSIVIVIIFAIGSAAFAIVGPKILGKATTKLFEGLVDKVTGVHGAAIDFTYIGNI ALLLLGLYIASTVFSIIQGYIISGVAQKVSYNFRKEIDEKINRMPLKYFDKTTHGEVL SRVTNDVDTVSQTLNQSMSQIITSVITIIGVLIMMLSISWQMTLVALLILPVSMTLIM GVVKRSQKYFKSQQEYLGHVNGQVEEIYSGHNIVKAFNTEEEEVKKFEEVNDTLYHSA WKSQFLSGMMMPIMMFIGNIGYVAVSILGGWLAVKRTIAVGDILAFVQYVRSFTQPIA QVAQIANVLQSTAAAAERVFEFLDEEEEIPEAENPVKLQEVKGEVTFKDVQFGYNPDK IIINNFSANIKPGQKVAIVGPTGAGKTTIVKLLMRFYDVNSGAICIDGHDIKDFTRED LRSMFGMVLQDTWLFNGSIMENIRYGRLGATDEEVIEAAKAAHVHSFVKTLPNKYQME LNEEASNVSQGQKQLLTIARALLADPKILILDEATSSIDTRTEVLIQKAMENLMEGRT SFIIAHRLSTIRDADLILVMKDGDIVEQGNHEELLKADGFYASLYNSQFEGADAS" gene complement(6863..7072) /locus_tag="CON69_RS25995" /old_locus_tag="CON69_25990" CDS complement(6863..7072) /locus_tag="CON69_RS25995" /old_locus_tag="CON69_25990" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_006093745.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_003204410.1" /translation="MKLPSAEYTLKPGSVAAGVVNKTINSPFAQFWQGSGYWDTATKV KPSSTSTGAIKTDDLKLIRSDVLEK" CONTIG join(NVOF01000081.1:1..7277) //
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