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NCBI Reference Sequence: NZ_NOVX01000016.1
FASTA Graphics
LOCUS NZ_NOVX01000016 10622 bp DNA linear CON 23-NOV-2023 DEFINITION Klebsiella pneumoniae strain KPC94 contig-1000009, whole genome shotgun sequence. ACCESSION NZ_NOVX01000016 NZ_NOVX01000000 VERSION NZ_NOVX01000016.1 DBLINK BioProject: PRJNA224116 BioSample: SAMN06766288 Assembly: GCF_020615575.1 KEYWORDS WGS; RefSeq. SOURCE Klebsiella pneumoniae ORGANISM Klebsiella pneumoniae Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella. REFERENCE 1 (bases 1 to 10622) AUTHORS Camargo,D.R.A., Alves,C.F.M., Coimbra,R.S., Nicolas,M.F. and Vasconcelos,A.T.R. TITLE Direct Submission JOURNAL Submitted (24-JUL-2017) Labinfo, LNCC - Laboratorio Nacional de Computacao Cientifica, Rua Getulio Vargas 333, Petropolis, RJ 25651070, Brazil COMMENT REFSEQ INFORMATION: The reference sequence is identical to NOVX01000016.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Newbler v. 3.0 Expected Final Version :: no Genome Coverage :: 118.0x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/23/2023 03:24:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 6,298 CDSs (total) :: 6,153 Genes (coding) :: 5,949 CDSs (with protein) :: 5,949 Genes (RNA) :: 145 rRNAs :: 10, 9, 8 (5S, 16S, 23S) complete rRNAs :: 9, 1, 1 (5S, 16S, 23S) partial rRNAs :: 1, 8, 7 (5S, 16S, 23S) tRNAs :: 106 ncRNAs :: 12 Pseudo Genes (total) :: 204 CDSs (without protein) :: 204 Pseudo Genes (ambiguous residues) :: 0 of 204 Pseudo Genes (frameshifted) :: 75 of 204 Pseudo Genes (incomplete) :: 143 of 204 Pseudo Genes (internal stop) :: 18 of 204 Pseudo Genes (multiple problems) :: 30 of 204 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..10622 /organism="Klebsiella pneumoniae" /mol_type="genomic DNA" /submitter_seqid="contig-1000009" /strain="KPC94" /isolation_source="blood isolated from a 12-year-old boy" /host="Homo sapiens" /db_xref="taxon:573" /geo_loc_name="Brazil: City of Juiz de Fora, State of Minas Gerais" /lat_lon="21.764167 S 43.350278 W" /collection_date="2011" gene complement(<1..364) /locus_tag="KPC94_RS05675" /pseudo CDS complement(<1..364) /locus_tag="KPC94_RS05675" /inference="COORDINATES: similar to AA sequence:RefSeq:YP_005226014.1" /note="incomplete; too short partial abutting assembly gap; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="group II intron reverse transcriptase/maturase" gene 801..1115 /locus_tag="KPC94_RS05680" /old_locus_tag="KPC94_06057" CDS 801..1115 /locus_tag="KPC94_RS05680" /old_locus_tag="KPC94_06057" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_004883458.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_004196316.1" /translation="MNVHKSYQTITHYHFDWLTPAGDYPKSAIMVVECKDGRWMIVQE FGEDYGCFEGVLKNECDLITKPTFYPDLRSAAMSGFGMMKQLYPLYDDNLFNEFLSEI PE" gene 1124..1633 /locus_tag="KPC94_RS05685" /old_locus_tag="KPC94_01084" CDS 1124..1633 /locus_tag="KPC94_RS05685" /old_locus_tag="KPC94_01084" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_004196342.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_004196342.1" /translation="MANILMPDCLVKLNNLLQAIENAPVECDGHTLMISSALNHAGIS HQRMCGVVKNPKTYFELYPHFWIEIGEFTLDYRLRIWVELYSGGKLSEGAAHGIFDAR GLEYLYTSGSICPPPALDFNLLNLISDGYYEKINFTELTTLAHSVDISLISDVKNVTN TGVAEYNDN" gene 1623..2063 /locus_tag="KPC94_RS05690" CDS 1623..2063 /locus_tag="KPC94_RS05690" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_011251275.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_004196329.1" /translation="MIINQKILEADITNIINTFERLMDESNKSIIPVKSRHVDGLALF ENMYIRARSKHASLLGKPVLVVSSVSVFITNQGCFSTLLSHLKAHCKNKSYLLKIESV ISQELRRYLASQMFVFIGEEWECGSGYWVPEDDPVYPSLNTLPY" gene 2093..2749 /locus_tag="KPC94_RS05695" /old_locus_tag="KPC94_06053" CDS 2093..2749 /locus_tag="KPC94_RS05695" /old_locus_tag="KPC94_06053" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_004181937.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_004181937.1" /translation="MSTIHLITTCAKKKAGPVHDTVFPYHTTDTEIAYQQWKSLVQSR FTTCNDDIKETENIYCSAHWSTAKSIANSNSHICLWVISAGLGLRHSSDPAIPYDATF TKIGRKSASIWGMLTSDPILPGKVPSLAELFSMYRHDIFIIAASPVYLNAVEDDLVKG VAYLPCPIKQLKIASSAAYNGRLREYVRCGGTRMMKDLNANMTTLNIKHAGMLIHELE " gene complement(3023..3625) /locus_tag="KPC94_RS05700" CDS complement(3023..3625) /locus_tag="KPC94_RS05700" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_004181934.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="HAD domain-containing protein" /protein_id="WP_004181934.1" /translation="MAGALFSLSAGGVMFATAVVIIIFSAMLYDSIVKRRSKNINPPE FTGSPQLASCNCSGGTVLLYLDFDGVLHRRMNETFERMPLLEKILKQCPELHIVVSSS WRETMTLEGLKYLFPVAFRHRIIGVTPSLQEVKDTEYVRYRECLLHARHMGVNKFIII DDESHRFPPGCENLVSTNYSEGMTDQTVASVIMKYCQYLT" gene complement(3628..4143) /locus_tag="KPC94_RS05705" /old_locus_tag="KPC94_01086" CDS complement(3628..4143) /locus_tag="KPC94_RS05705" /old_locus_tag="KPC94_01086" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_004196349.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_004196349.1" /translation="MFEHNIAFNGMMIVIVILSYLLFKSLKSKKRLQHKYDEVFKAFH IANSEYTGGLKEVYKNLSLSNAQLQFLAVYLNQDTVQFDGRNIVCEKEDDVQYILSLI SDSHFWLDKSMKGINEVVNNTDVIKDIKLSLSPFASLGELNVIDDEFKLKNKEFDGFA KLKVKYDVKRG" gene complement(4261..5217) /locus_tag="KPC94_RS05710" /old_locus_tag="KPC94_01087" CDS complement(4261..5217) /locus_tag="KPC94_RS05710" /old_locus_tag="KPC94_01087" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_004181932.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_025368585.1" /translation="MNTNVHHVQENFYISLQDCINKEEKTKKTCIEYWRREAERAKEE SARRRALSIKIITEKSMILETLFLNIQKTNALKEQYERNLIAKWGGVIDDDKTKDYGI FLPSLEHLSAYVSCAKNDEYSREVLYNRPELSRGIKYDNSYYCPQEKKFIYMRNDKFR PDLELLTNPPYPDFCKNLLYFYVRSFSLHLKKGEPGKPLEIGIRNSVSKNTYEDLCIG LEILMPYMCKTESGKVIINDEGYLSCDSYYRSILVNPKTGGAELVIYRKGRFDHRQKP NTREPRKWLNEDIIIKEFPNIRIVFLYIISCRYQQHFKNRDI" gene complement(5447..6403) /locus_tag="KPC94_RS05715" /old_locus_tag="KPC94_01088" CDS complement(5447..6403) /locus_tag="KPC94_RS05715" /old_locus_tag="KPC94_01088" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_014386559.1" /GO_function="GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0015035 - protein-disulfide reductase activity [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DsbA family protein" /protein_id="WP_004196319.1" /translation="MENKQSTKKQTLIHIALVVGGFVAGSVIWGNGSNIMNSNDSANE SVKKQQIELANRFNALAQTANQVNKPAGLVLTEQDKELIGKTAAQYLIEHPENLVEAG KRLEANRDGEKTSDVVNTKDVLLETKFTPNYGPDNADVAVIEFFDYMCHFCQQSSPVL EKAIAENKNVRTFFKDFTIFADRTPISGMGAKIGLYIFNKYGQEKYYEFHNKLMSEAG RAMKDRKDYTPSNLAALVNGLGYKEILDQQGNFLLTVEMRDQLQNVLDANMMLADKLN YSGTPVFIVMNMKNPQNKTTTIMPGAPDFYRLQQAIDKAKGN" gene complement(6463..6804) /locus_tag="KPC94_RS05720" /old_locus_tag="KPC94_01089" CDS complement(6463..6804) /locus_tag="KPC94_RS05720" /old_locus_tag="KPC94_01089" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_004883444.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_004181929.1" /translation="MGLIRTVVYVGIIGGIFAYTQTKDSLENISVPDAEFPSSISRNN FIQSTWVNEHYTSLKNGPIADGISSILDDAQDIRGSVNNVVMTAGNVDIQKAIQDAVD ELDSNSRKSSK" gene complement(6818..7129) /locus_tag="KPC94_RS05725" /old_locus_tag="KPC94_01090" CDS complement(6818..7129) /locus_tag="KPC94_RS05725" /old_locus_tag="KPC94_01090" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_011251282.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_004181928.1" /translation="MKKLIAVAAVVVVSFAAQSSVCGPVACKVTFVDVDGSQKPIMLL DDKVSTRKSSMNRVFDDVYSHGRKVQTDLKSTTPAAGHPDKSSPVQMSRELSPVVIYS A" gene complement(7146..7874) /locus_tag="KPC94_RS05730" /old_locus_tag="KPC94_01091" CDS complement(7146..7874) /locus_tag="KPC94_RS05730" /old_locus_tag="KPC94_01091" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_017900915.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="thioredoxin fold domain-containing protein" /protein_id="WP_004181926.1" /translation="MIKPIAVALILLTPSAYADVDLPAELKDKIEAVGINPVSAEKSP VSGIYSVFSKEGTSYVTSDGEYIFTGNLFKVKGTEVENTTDEFISKGMRSYIEKLDTI TYKAPDEKYVIGVFTDITCGFCQKLHSDLQSYLDKGITIKFIAYPRAGMNSMIARNMA SVWCADDKPAALTRAMKGDGLPEKQPTKACMDSIQSQFNAGNMFKLSGTPSGLSLKGE PMVFAGLRDPDQMLNSLKTANQKK" gene 8008..8622 /locus_tag="KPC94_RS05735" /old_locus_tag="KPC94_01092" CDS 8008..8622 /locus_tag="KPC94_RS05735" /old_locus_tag="KPC94_01092" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_004026303.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="lytic transglycosylase domain-containing protein" /protein_id="WP_004026303.1" /translation="MTRLFFGAVLFATLTVNANAAFNPPPDRPKPQNVPETVKNECLT DAARFFGIDRDLVFTLFDNEGGKIGSFVLNTNGTWDIGPMQINSSNLAEVKSHFPAIT WRELAYDACASFWVGTWWLHRKIIDRKGNVFEGIADYNSKTPRVRANYIFKFMERYNR RLQRNGKMMQLNAWTGLDRVKQNPPEVTGKLANNSHQQSWQSYR" gene complement(8890..10173) /locus_tag="KPC94_RS05740" /old_locus_tag="KPC94_01093" CDS complement(8890..10173) /locus_tag="KPC94_RS05740" /old_locus_tag="KPC94_01093" /EC_number="3.6.4.-" /inference="COORDINATES: protein motif:HMM:NF024487.3" /GO_function="GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DEAD/DEAH box helicase" /protein_id="WP_223819051.1" /translation="MISNGQAVCKEQEQNNTLLKQAISDLGASWPERTATDERRELSA PWLHERWRKAREDVFIAALDVHRAFIENNPVKMAANIGLAMDWLKGRKLTEKQAGLAL DSLSLVVPVISSTFASMPRMFRDTGQEAIGWLLIDEAGQAQPQHAIGAIWRAKRTVLV GDPKQLEPVSGIPSTVEGALGKHYKIPSCWWPGKVSAQILADQTMDVGTYLPDPESEQ IWVGCPLRVHRRCDDPMFSISNHIAYDGLMVHGKKPGLVDFPESGWLDVKGRTCEGNW VVEEGAAVEKLLLALRHQYSLTPDDVFLISPFKDCAKQLNRIAKRLGFRMDRTGTVHK TQGKEATVVILVLGGNIKSQGAKAWAAEKPNLLNVAVSRAKQRIYVIGERALWEKQPY FSTLSRALGRLDVPVSNSNPRAMSYMEEYLTTEWR" gene complement(10234..>10622) /locus_tag="KPC94_RS05745" CDS complement(10234..>10622) /locus_tag="KPC94_RS05745" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_076611553.1" /GO_process="GO:0015074 - DNA integration [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=3 /transl_table=11 /product="DDE-type integrase/transposase/recombinase" /protein_id="WP_139834557.1" /translation="SRLTMKALEMAWETRGKPVGVMFHSDQGSHYTSRQFRQLLWRYR IRQSMSRRGNCWDNSPMERFFRSLKNEWVPATGYVSFSDAAHAITDYIVGYYSALRPH EYNGGLPPNESENRYWKNSNAVASFC" CONTIG join(NOVX01000016.1:1..10622) //
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