LOCUS NZ_NLWA01000040 41488 bp DNA linear CON 25-APR-2024
DEFINITION Escherichia coli strain MOD1-EC6515
MOD1-EC6515_40_length_41488_cov_27.5915, whole genome shotgun
sequence.
ACCESSION NZ_NLWA01000040 NZ_NLWA01000000
VERSION NZ_NLWA01000040.1
DBLINK BioProject: PRJNA224116
BioSample: SAMN04993137
Assembly: GCF_002513195.1
KEYWORDS WGS; RefSeq.
SOURCE Escherichia coli
ORGANISM Escherichia coli
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
Enterobacterales; Enterobacteriaceae; Escherichia.
REFERENCE 1 (bases 1 to 41488)
AUTHORS Gangiredla,J., Mammel,M.K., Barnaba,T.J., Tartera,C., Gebru,S.T.,
Patel,I.R., Leonard,S.R., Kotewicz,M.L., Lampel,K.A., Elkins,C.A.
and Lacher,D.W.
TITLE Species-Wide Collection of Escherichia coli Isolates for
Examination of Genomic Diversity
JOURNAL Genome Announc 5 (50), e01321-17 (2017)
PUBMED 29242221
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 41488)
AUTHORS Gangiredla,J., Lacher,D.W., Mammel,M.K., Barnaba,T., Tartera,C.,
Gebru,S., Patel,I.R., Leonard,S.R., Lampel,K.A. and Elkins,C.A.
TITLE Direct Submission
JOURNAL Submitted (07-JUL-2017) CFSAN-ORS-DM-MMSB, US Food and Drug
Administration, 5100 Paint Branch Parkway, College Park, MD 20740,
USA
COMMENT REFSEQ INFORMATION: The reference sequence is identical to
NLWA01000040.1.
The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Method :: SPAdes v. 3.8.2
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 32.1x
Sequencing Technology :: Illumina NextSeq 500
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Name :: GCF_002513195.1-RS_2024_04_25
Annotation Date :: 04/25/2024 01:43:15
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 6.7
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA
Genes (total) :: 4,812
CDSs (total) :: 4,730
Genes (coding) :: 4,584
CDSs (with protein) :: 4,584
Genes (RNA) :: 82
rRNAs :: 2, 2, 3 (5S, 16S, 23S)
complete rRNAs :: 2, 1 (5S, 16S)
partial rRNAs :: 1, 3 (16S, 23S)
tRNAs :: 66
ncRNAs :: 9
Pseudo Genes (total) :: 146
CDSs (without protein) :: 146
Pseudo Genes (ambiguous residues) :: 0 of 146
Pseudo Genes (frameshifted) :: 53 of 146
Pseudo Genes (incomplete) :: 90 of 146
Pseudo Genes (internal stop) :: 24 of 146
Pseudo Genes (multiple problems) :: 21 of 146
Pseudo Genes (short protein) :: 2 of 146
CRISPR Arrays :: 2
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..41488
/organism="Escherichia coli"
/mol_type="genomic DNA"
/submitter_seqid="MOD1-EC6515_40_length_41488_cov_27.5915"
/strain="MOD1-EC6515"
/serotype="O117:H21"
/isolation_source="bovine cow intestine"
/host="bovine"
/db_xref="taxon:562"
/geo_loc_name="USA: PA"
/collection_date="1990-04-11"
/collected_by="Pennsylvania State University | Escherichia
coli Reference Center"
gene complement(<1..473)
/locus_tag="A7629_RS26265"
CDS complement(<1..473)
/locus_tag="A7629_RS26265"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000214972.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_213077741.1"
/translation="MTVALIMVTKDIYLKNGLLYFSSQDEEYKCFEFSGRASVYEAVQ
QYNYVYIVCDNNNYFLYSLLFSGGPVKCICADNITIQYGNRLSIDYTHPPEQILRSLN
NTEREILYLYFIKRRKIKEISNITCLSVSKIYYRIRMIKIKFGAETTRKLPILFR"
gene complement(680..4516)
/locus_tag="A7629_RS20700"
CDS complement(680..4516)
/locus_tag="A7629_RS20700"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_016158919.1"
/GO_function="GO:0004252 - serine-type endopeptidase
activity [Evidence IEA]"
/GO_process="GO:0006508 - proteolysis [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="S6 family peptidase"
/protein_id="WP_001033999.1"
/translation="MNKIYAIKKNKKGEAVVVSEVSEGIRKSVTSRLSLNILLMIGLW
LLCSASSWSSVTTNYIPYQTYRDFAENKGLFKPGTVNFSFYDKQGNVVTSLSKAPMID
FSSNDLTGVATLVSPQYVVSVKHNGGYQYVKFGYADDSSYTLVDRNNHWRDFHTPRLN
KIVTEVTPLDITNAGTANGTYQNADRFPMFYRVGAGTQYVKDTNGKISYLMGAYSYKT
GGIVNKPFISDWSFVTNTINSPLSTYGTPGDSGSPLFAWDADQNKWVLLAVLNSYAGV
NGNTNWYTIIPAGDVKNTMKLDVDTPVNTKQGEGDIHWSYDEKTGLGSLTQGSASWAM
HGNLGATWPASLNSGKDLTFQGGGTVVLENTVNQGAGTLTFDDDYIVKPVDTQTWKGG
GIIVNGEHLVDWQINGITGDSLHKLGTGTLKINGTGVNPGSLSVGDGTVILAQRADDN
GLSQAFSSVSIVSGRPTLVLNDDKQINPDNIKWGYHGGKLDINGNSLTFHELNGADDG
AILTNSGSMANVNLDFNSPNTTATIANIWHGHFTGNLNINNEVAVGTQNDFAIDGGVN
SQGSITQQNGRLFMQGHPVVHAVSSQDVANKLKALGDNSVLTQPVSFTQNDWENRQFS
MAELNLQNAEFNLARNASLNTRINADHSTVTLGSEDLYIDLNDGNGVATKPTLGKSKA
TAEDDQSRFNGHVQLKQGSALTINEHFIGGIDSTDSATTITSTDTTLNQLSRFTQSSL
SLGQGAKLTATAGLLSDGTVSSNAGASLSLLSDQPGTMYFAKSWELSGQSTSLNVGAG
GSITGDINANDAASIRFGTTDVNQSTNYYGDINAPLASVTMKDTVWQANKQSVVKSLT
LNGSTLSFNRFGQGGLTSDTLEATNSSFIINADGKAADTVTVNQALTGANNTLVVIPT
TNSVKQGGYSVALVTAPKNTQSDIFTLNPVSINAGFHSFTPQLDVLETDVNKQWRLEG
FYIQPDKAALRTGKSFMDLGYKNFITEINNLNDRMGDLRHTHGETGAWARLNSGSGSA
TDGFTGSYTHLQIGADRKHIIESGELFTGVTATFTSSNNRGTGWSGRTKSTGIGVYAS
AMFDSGLYVDTIGKYVRHDNHYSSSALGMPEQDYGSHSWYLGAEAGWRFSLPDETYIQ
PQTELIYGTVSENQFAWQFNGGEVYMQRKQMHPLIGRTGIEFGKTFSDKDWEMTALTG
VNYQYDLFKPTVTTFKDLAGDTYINNGKDSRVVFNVGLNTKIKENTRISLNVERSEFG
SYNIDKLINANIRYTF"
gene 4866..5399
/locus_tag="A7629_RS20705"
CDS 4866..5399
/locus_tag="A7629_RS20705"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_001402790.1"
/GO_component="GO:0009289 - pilus [Evidence IEA]"
/GO_process="GO:0007155 - cell adhesion [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="fimbrial protein"
/protein_id="WP_000733565.1"
/translation="MKKLILGSAIMAVLGVASNAMAAPNTGTVNFIGSVSTATCEINV
TDSAGAQVSNVNLGTLANTGTTGQQVAFKLVPTDQTCLGKTQANITWSSPTLMATGLS
NAATGGTNATMALVATNATKTGAAAAIKTGATSLDYNITGGIPSFNYSAWLAKPATGA
LTAGPFSASASYVIAYK"
gene 5468..7825
/gene="pefC"
/locus_tag="A7629_RS20710"
CDS 5468..7825
/gene="pefC"
/locus_tag="A7629_RS20710"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000695775.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="PefC/AfrB family outer membrane usher protein"
/protein_id="WP_000695774.1"
/translation="MKIKVLCVAIIFHLWSNEILADDFNYSFIRGGSKEVPEVLKNPG
QNIPGKYVVDLLFNGSKTATSVDLAISNDDAEHICLSDEWLQEKGITINKEFYKAYLN
PARNCYIIDKEKNSRVFFDPSLQELSIDMPQAGFIDTKKEGGTWDYGSTGFKLAYDLN
TSKSSNQDRTTYGNIEGQINIGEWVLLGRGYAYQGEKFQSNNLLLTHAIKSIKSDILI
GKTQSYNTLNNGFTFYGAQLKSNQDMYPWNSQSYAPVINGIARTHARVTVEQGGYTLK
SFVVPPGPFVINDLTGVYSGDIILKIYEEDGTVKEQRFPVAVLPNLLKPGNYNYNIAI
GSKVDQYSDKRDEDSLFAQMTYDYGFVPFTLNTSALVDKNYTNVGLGFIRSFGWFGAI
AMSGNLSQAKYHNGKAMNGFSASVKYARALGENANLQLIGYRFNSENYIDYSDFNYRY
YSLLNNRPKQRYESIITYQLPEMNVFLNMSAWKEDYWDRSSEVGANLNLSKSFNNISV
SLNAGYSKLQGMENDYNAGVSLSVPFSVFDKSHYSFSGINYDRRNGTNFNTGVAGNIN
SRLSYNASINQSRNTTGSAVSASYLFDVVQTSASYSQMGSTSSSSFQVGGSIIGVPDA
GILFTPVKNDEIAVVQMEDVPGVRFNGSMPGDKKGRAVIPLTAYNNNTITVNADNLPQ
SIELTENAINVTPTENAIIYKKVKYRKINTYIVKVISGNGFVIPMGSIAKNAENQEIG
YVNNGGILLMNLEEKDEGIISVGDCKFDSRSLKKDMGKVQEIKCD"
gene 7818..8519
/locus_tag="A7629_RS20715"
CDS 7818..8519
/locus_tag="A7629_RS20715"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000162908.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="fimbrial chaperone"
/protein_id="WP_000162908.1"
/translation="MTKKNTLQKLFTFASLCLFTASSHAAFVLNSTRYVFDEKRENIS
VQVDNQSTQEYGGQIWIENQDQNDKNVYFVPSPTFFKVAEQHKQILRILKINDALPKD
KESLFWINIQEIPKAPKDGTNTLSIALHTQVKMFYRPDALKEKRENAEQNIKAISSEG
NTVLWNDTPYYFAIISVKQNGTAIKVSEDIKDKLSVFAPGEKVSLGKSVTSNSLSIVA
FDDYGVDKEYKLNKS"
gene 8539..9534
/locus_tag="A7629_RS20720"
CDS 8539..9534
/locus_tag="A7629_RS20720"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_001395679.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_001395679.1"
/translation="MYKFILALFIAILSLSSIPAIAANCSGGGIAFQIDPNDSRYFMK
GYTSADNSPLLRMNLTLSNGIDCEPDYIENAVKKSKMTIKMTGGGNCKTPTSITTPYP
NIEWQLEGMTCNSGFISSNNIRSADWDGKAHWPAGTSLGKASLVVNDQYWIQNTQTGE
YPVNIPIPSAGNTLVNSPAINISAQLGAMMTFIFNDIGTCSMSLHPENIDFGKLTPND
VNSNIYKEIMLSYSCKNKALINGLYVRFDPENVVDAANGLFSASDSNGRKLNFQITRQ
YGNLQTIPLNANYKIFDQYKYDYDASATFRINVRPSTPFPVGKVSTYLNVSLIYR"
gene 9626..10069
/locus_tag="A7629_RS20725"
CDS 9626..10069
/locus_tag="A7629_RS20725"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012908072.1"
/GO_component="GO:0009289 - pilus [Evidence IEA]"
/GO_process="GO:0007155 - cell adhesion [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="fimbrial protein"
/protein_id="WP_000996600.1"
/translation="MAINAELTVNTCALSLSPANLNFQQVSFSQFENSATTAQTVDLN
ISCSWPATGISLKFSPAAGVAASSTSLMKTGLSGVGLALSWKNATGTDFTPLELNKSF
APASTALSKNSETLGQFQLLPKQIPGETLQAGNVNTSLTVEVTYD"
gene 10062..10580
/locus_tag="A7629_RS20730"
CDS 10062..10580
/locus_tag="A7629_RS20730"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_003582778.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_000565927.1"
/translation="MIDKRCLFFPLLMGLLSASMPLAGYAAQKANVSLPITMTVTNPQ
CQINNGTGLPENIQLPLITTSGTLLGDNNVEVPILINCLSNITKFEVTFTGGNNSKIT
TSNNMVDLTLSWKKGGGAVTFGSPVELSKSPFLVSPKQFDGSLLVKVSPRTGTIPAGS
YTASLPVTFTYY"
gene 10660..>11388
/locus_tag="A7629_RS26450"
/pseudo
CDS 10660..>11388
/locus_tag="A7629_RS26450"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_076611151.1"
/note="frameshifted; incomplete; partial in the middle of
a contig; missing C-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="helix-turn-helix domain-containing protein"
gene complement(11518..13680)
/locus_tag="A7629_RS20745"
CDS complement(11518..13680)
/locus_tag="A7629_RS20745"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_001395681.1"
/GO_component="GO:0055052 - ATP-binding cassette (ABC)
transporter complex, substrate-binding subunit-containing
[Evidence IEA]"
/GO_function="GO:0140359 - ABC-type transporter activity
[Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA];
GO:0016887 - ATP hydrolysis activity [Evidence IEA];
GO:0042626 - ATPase-coupled transmembrane transporter
activity [Evidence IEA]; GO:0008233 - peptidase activity
[Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="peptidase domain-containing ABC transporter"
/protein_id="WP_001395681.1"
/translation="MHNILNQNVFLRKKHLPLIFQTERTDCALSCIAMIANFHGISLS
LSQLKSNYPQYKGGMNLNDVYDILSSTGLNVRVLSVDNDELGKVNLPCILHWDCDHFV
VLRKIKRDKFIVHDPERGMLTLGYVKFFEHFSGIIVESIPRLVIPDLSSTNLLSGKEK
KYSVSNNLSFFISLLRQCQSPVFFILILLFIIEFINICLPQVTQLIIDDVIVNSDMHL
LIVATLGYFFLSLIQIVVTSAKDVIFIWISAHLGYQLPLSFYNKLMALPVSFFNSRTL
GDLISRFDSVDFIKNTTTTQLLTTVLDSIMMSASFIMLMIYDKSLALIVMLMLFLYAL
TKLFSYKIYKYCNVSTLKSKARQNGAVIESVKNHQLLKLYSECRGVRGNFSQSLVDVV
NNQAKVGYIQIAFTGANLFLSSLKNVFILYLGGIQVMSGNFSIGMLVAFISYSEQFCR
RSMKIIDFMMQGYMSGVHIERINEVMTAPPETESPAQFFSSKYINGVSLELNNISFSY
STKYVILSSLSFKLDPGEVLLISGKSGCGKSTLVKIILGLLPPTGGHIICNGVNILEH
NIQSFRKITGTVLQGDSLLSGSLLYNISFDNTVSLDDVIHITKGLGIHEVINSLPMGY
YSQVTDINAFLSVGQIQRILLARAIYRKPALLILDEATSNLDHESETQVIDYIATIPC
AKIIISHKGEALRIADKILYLDRATSYCKSNIHNKHCS"
gene complement(13673..14893)
/locus_tag="A7629_RS20750"
CDS complement(13673..14893)
/locus_tag="A7629_RS20750"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_001150579.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="HlyD family secretion protein"
/protein_id="WP_001150579.1"
/translation="MQDFIEKNHRSNFGDVIIATTFSQRAITVCSVIIFICIILFMSF
AEYTQKRNVNGIVYPDKGIISIKSKQSGTLSALYIKSGDFINSGEKLLAIDASSSTHY
FKNNEESYREMFSKLRSISSRETQENITDLEAKKKLTEEQVIQTKNSIAIMERQIRLL
NAAIHSQQISFSKIQDAYKKRYVSDVEKNNAEMQLIDKKMQLQSLNNEISSKEGQIIS
LKKELEDTIDRLKNIQNENEKESIDSLIKMYGVASDSESILRAPSAGKIAEIVEKTGS
FVNAGDTILTVIPQGSVNQIVAFISPEFIGEIKKGTRVALKYDSYPYQRFGFEHGIII
DISRVPLQPEDIYTNFGLKFENACYRIVIKITEKKKRINIIPGMSLKVDIPTRKTSII
KWIFPFFRDKDIDA"
gene complement(14932..15504)
/locus_tag="A7629_RS20755"
CDS complement(14932..15504)
/locus_tag="A7629_RS20755"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012908055.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_000661408.1"
/translation="MKELNREDCERIYGCGINIAPALRGLGEFGEDFAHGAEGGIQLA
DALGLFEPPEKSTPKYTSDPQLLNMDVNIANTYMHEIQTHTGSDQITDTMREDAIHNL
QNDGRVYFNPISNHFESLGGTPGEGTFSADEIKDPDVKQFIEQVMNKDVQNVHSSDAS
VAHNALESIQNSTREGAYHFSVEQNKFVVG"
gene 15907..>16658
/locus_tag="A7629_RS25665"
/pseudo
CDS 15907..>16658
/locus_tag="A7629_RS25665"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_086558235.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="frameshifted; incomplete; partial in the middle of
a contig; missing C-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS3 family transposase"
gene 16787..18418
/gene="dcuS"
/locus_tag="A7629_RS20765"
CDS 16787..18418
/gene="dcuS"
/locus_tag="A7629_RS20765"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_313134.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="sensor histidine kinase"
/protein_id="WP_001216489.1"
/translation="MRHSLPYRMLRKRPMKLSTTVILMVSAVLFSVLLVVHLIYFSQI
SDMTRDGLANKALAVARTLADSPEIRQGLQKKPQESGIQAIAEAVRKRNDLLFIVVTD
MQSLRYSHPEAQRIGQPFKGDDILKALNGKENVAINRGFLAQALRVFTPIYDENHKQI
GVVAIGLELSRVTQQINDSRWSIIWSVLFGMLVGLIGTCILVKVLKKILFGLEPYEIS
TLFEQSQAMLQSIKEGVVAVDDRGEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQV
VDVSEVLRDGTPRRDEEITIKDRLLLINTVPVRSNGVIIGAISTFRDKTEVRKLMQRL
DGLVNYADALRERSHEFMNKLHVILGLLHLKSYKQLEDYILKTANNYQEEIGSLLGKI
KSPVIAGFLISKINRATDLGHTLILNSESLLPDSGSEDQVATLITTLGNLIENALEAL
GPEPGGEISVTLHYRHGWLHCEVNDDGPGIAPDKIDHIFDKGVSTKGSERGVGLALVK
QQVENLGGSIAVESEPGIFTQFFVQIPWDGERSNR"
gene 18415..19134
/gene="dcuR"
/locus_tag="A7629_RS20770"
CDS 18415..19134
/gene="dcuR"
/locus_tag="A7629_RS20770"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_313133.1"
/GO_function="GO:0003700 - DNA-binding transcription
factor activity [Evidence IEA]"
/GO_process="GO:0000160 - phosphorelay signal transduction
system [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="two-component system response regulator DcuR"
/protein_id="WP_000611288.1"
/translation="MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIF
NSDTPIDLILLDIYMQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVD
YLIKPFQASRFEEALTGWRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLT
PQTLRTLCQWIDAHQDYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTG
RPVYRYRIQAEHYSLLKQYCQ"
gene 19705..21045
/gene="dcuB"
/locus_tag="A7629_RS20780"
CDS 19705..21045
/gene="dcuB"
/locus_tag="A7629_RS20780"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_313132.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="anaerobic C4-dicarboxylate transporter DcuB"
/protein_id="WP_000899522.1"
/translation="MLFTIQLIIILICLFYGARKGGIALGLLGGIGLVILVFVFHLQP
GKPPVDVMLVIIAVVAASATLQASGGLDVMLQIAEKLLRRNPKYVSIVAPFVTCTLTI
LCGTGHVVYTILPIIYDVAIKNNIRPERPMAASSIGAQMGIIASPVSVAVVSLVAMLG
NVTFDGRHLEFLDLLAITIPSTLIGILAIGIFSWFRGKDLDKDEEFQKFISVPENREY
VYGDTATLLDKKLPKSNWLAMWIFLGAIAVVALLGADSDLRPSFGGKPLSMVLVIQMF
MLLTGALIIILTKTNPASISKNEVFRSGMIAIVAVYGIAWMAETMFGAHMSEIQGVLG
EMVKEYPWAYAIVLLLVSKFVNSQAAALAAIVPVALAIGVDPAYIVASAPACYGYYIL
PTYPSDLAAIQFDRSGTTHIGRFVINHSFILPGLIGVSVSCVFGWIFAAMYGFL"
gene 21123..22769
/gene="fumB"
/locus_tag="A7629_RS20785"
CDS 21123..22769
/gene="fumB"
/locus_tag="A7629_RS20785"
/EC_number="4.2.1.2"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_418546.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="class I fumarate hydratase"
/protein_id="WP_000066681.1"
/translation="MSNKPFIYQAPFPMGKDNTEYYLLTSDYVSVADFDGETILKVEP
EALTLLAQQAFHDASFMLRPAHQKQVAAILHDPEASENDKYVALQFLRNSEIAAKGVL
PTCQDTGTAIIVGKKGQRVWTGGGDEEALSKGVYNTYIEDNLRYSQNAALDMYKEVNT
GTNLPAQIDLYAVDGDEYKFLCVAKGGGSANKTYLYQETKALLTPGKLKNFLVEKMRT
LGTAACPPYHIAFVIGGTSAETNLKTVKLASAHYYDELPTEGNEHGQAFRDVQLEQEL
LEEAQKLGLGAQFGGKYFAHDIRVIRLPRHGASCPVGMGVSCSADRNIKAKINREGIW
IEKLEHNPGQYIPQELRQAGEGEAVKVDLNRPMKEILAQLSQYPVSTRLSLTGTIIVG
RDIAHAKLKELIDAGKELPQYIKDHPIYYAGPAKTPAGYPSGSLGPTTAGRMDSYVDL
LQSHGGSMIMLAKGNRSQQVTDACHKHGGFYLGSIGGPAAVLAQQSIKHLECVAYPEL
GMEAIWKIEVEDFPAFILVDDKGNDFFQQIVNKQCANCTK"
gene 22892..23521
/gene="yjdF"
/locus_tag="A7629_RS20790"
CDS 22892..23521
/gene="yjdF"
/locus_tag="A7629_RS20790"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_313130.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="DUF2238 domain-containing protein"
/protein_id="WP_000198752.1"
/translation="MTRTLKPLILNTGALALTLILIYTGISAHDKLTWLMEVTPVIIV
VPLLLATARRYPLTPLLYTLIFFHAIILMVGGQYTYAKVPVGFEVQEWLGLSRNPYDK
LGHFFQGLVPALVAREILVRGMYVRGRKMVAFLVCCVALAISAMYELIEWWAALAMGQ
GADDFLGTQGDQWDTQSDMFCALLGALTTVIFLARFHCRQLRRFGLITG"
gene complement(23660..25081)
/gene="melB"
/locus_tag="A7629_RS20795"
CDS complement(23660..25081)
/gene="melB"
/locus_tag="A7629_RS20795"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_418544.2"
/GO_component="GO:0016020 - membrane [Evidence IEA]"
/GO_function="GO:0015293 - symporter activity [Evidence
IEA]; GO:0022857 - transmembrane transporter activity
[Evidence IEA]"
/GO_process="GO:0008643 - carbohydrate transport [Evidence
IEA]; GO:0006814 - sodium ion transport [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="melibiose:sodium transporter MelB"
/protein_id="WP_000028114.1"
/translation="MSISMTTKLSYGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLV
GTLFLVARIWDAINDPIMGWIVNATRSRWGKFKPWILIGTLANSVILFLLFSAHLFEG
TTQIVFVCVTYILWGMTYTIMDIPFWSLVPTITLDKREREQLVPYPRFFASLAGFVTA
GVTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVFSSDNQPSAEGSHL
TLKAIVALIYKNDQLSCLLGMALAYNVASNIITGFAIYYFSYVIGDADLFPYYLSYAG
AANLVTLVFFPRLVKSLSRRILWAGASILPVLSCGVLLLMALMSYHNVVLIVIAGILL
NVGTALFWVLQVIMVADTVDYGEYKLHVRCESIAYSVQTMVVKGGSAFAAFFIAVVLG
MIGYVPNVEQSTQALLGMQFIMIALPTLFFMVTLILYFRFYRLNGDTLRRIQIHLLDK
YRKVPPEPVHADIPVGAVSDVKA"
gene complement(25184..26539)
/gene="melA"
/locus_tag="A7629_RS20800"
CDS complement(25184..26539)
/gene="melA"
/locus_tag="A7629_RS20800"
/EC_number="3.2.1.22"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_418543.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="alpha-galactosidase"
/protein_id="WP_000988016.1"
/translation="MMTAPKITFIGAGSTIFVKNILGDVFHREALKTAHIALMDIDPT
RLEESHIVVRKLMDSAGASGKITCHTQQKEALEDADFVVVAFQIGGYEPCTVTDFEVC
KRHGLEQTIADTLGPGGIMRALRTIPHLWQICEDMTEVCPDATMLNYVNPMAMNTWAM
YARYPHIKQVGLCHSVQGTAEELARDLNIDPATLRYRCAGINHMAFYLELERKTADGS
YVNLYPELLAAYEAGQAPKPNIHGNTRCQNIVRYEMFKKLGYFVTESSEHFAEYTPWF
IKPGREDLIERYKVPLDEYPKRCVEQLANWHKELEEYKNASRIDIKPSREYASTIMNA
IWTGEPSVIYGNVRNDGLIDNLPQGCCVEVACLVDANGIQPTKVGTLPSHLAALMQTN
INVQTLLTEAILTENRDRVYHAAMMDPHTAAVLGIDEIYALVDDLIAAHGDWLPGWLH
R"
gene 26822..27730
/gene="melR"
/locus_tag="A7629_RS20810"
CDS 26822..27730
/gene="melR"
/locus_tag="A7629_RS20810"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_418542.1"
/GO_function="GO:0003677 - DNA binding [Evidence IEA];
GO:0003700 - DNA-binding transcription factor activity
[Evidence IEA]"
/GO_process="GO:0006355 - regulation of DNA-templated
transcription [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="transcriptional regulator MelR"
/protein_id="WP_001090758.1"
/translation="MNTDTFMCSSDEKQTRSPLSLYSEYQRMEIEFRAPHIMPTSHWH
GQVEVNVPFDGDVEYLINNEKVNINQGHITLFWACTPHQLTDTGTCQSMAIFNLPMHL
FLSWPLDKDLINHVTHGMVIKSLATQQLSPFEVRRWQQELNSPNEQIRQLAIDEIGLM
LKRFSLSGWEPILVNKTSRTHKNSVSRHAQFYVSQMLGFIAENYDQALTINDVAEHVK
LNANYAMGIFQRVMQLTMKQYITAMRINHVRALLSDTDKSILDIALTAGFRSSSRFYS
TFGKYVGMSPQQYRKLSQQRRQTFPG"
gene 27929..30196
/gene="adiA"
/locus_tag="A7629_RS20815"
CDS 27929..30196
/gene="adiA"
/locus_tag="A7629_RS20815"
/EC_number="4.1.1.19"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_418541.2"
/GO_function="GO:0016831 - carboxy-lyase activity
[Evidence IEA]"
/GO_process="GO:0006520 - amino acid metabolic process
[Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="arginine decarboxylase"
/protein_id="WP_001307519.1"
/translation="MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDG
FAILSSNEAIDCLMFSYQMEHPDEHQNVRQLIGKLHERQQNVPVFLLGDREKALAAMD
RDLLELVDEFAWILEDTADFIAGRAVAAMTRYRQQLLPPLFSALMKYSDIHEYSWAAP
GHQGGVGFTKTPAGRFYHDYYGENLFRTDMGIERTSLGSLLDHTGAFGESEKYAARVF
GADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSR
NRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQ
DLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALS
QASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDVAVSMMDGNSGLSLTQEV
IDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQD
CWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRH
GIVPTRTTDFQIMFLFSMGVTRGKWGTLVNTLCSFKRHYDANTPLAQVMPELVEQYPD
TYANMGIHDLGDTMFAWLKENNPGARLNEAYSGLPMAEITPREAYNAIVDNNVELVSI
ENLPGRIAANSVIPYPPGIPMLLSGENFGDKNSPQVSYLRSLQSWDHHFPGFEHETEG
TEIIDGIYHVMCVKA"
gene 30521..31282
/gene="adiY"
/locus_tag="A7629_RS20820"
CDS 30521..31282
/gene="adiY"
/locus_tag="A7629_RS20820"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_313125.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="DNA-binding transcriptional activator AdiY"
/protein_id="WP_001217059.1"
/translation="MRICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNI
IDVSSLNNTLVAHISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAA
QHSMMPAETESEKERTRALLFTVLSRFLDSKKFLSLMMYMLRNCVSDSVYQIIESDIH
KDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQ
SCGYNSTSYFISVFKDFYGMTPLHYVSQHRERTVA"
gene 31419..32756
/gene="adiC"
/locus_tag="A7629_RS20825"
CDS 31419..32756
/gene="adiC"
/locus_tag="A7629_RS20825"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_313124.1"
/GO_component="GO:0016020 - membrane [Evidence IEA]"
/GO_function="GO:0022857 - transmembrane transporter
activity [Evidence IEA]"
/GO_process="GO:0055085 - transmembrane transport
[Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="arginine/agmatine antiporter"
/protein_id="WP_000093154.1"
/translation="MSSDADAHKVGLIPVTLMVSGNIMGSGVFLLPANLASTGGIAIY
GWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNI
AMVVIGVGYLSYFFPILKDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALI
PIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVK
NPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGA
IVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILM
TIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPAYLAVTT
IAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLHKNPYPLDAPISKD"
gene 32860..34503
/gene="eptA"
/locus_tag="A7629_RS20830"
CDS 32860..34503
/gene="eptA"
/locus_tag="A7629_RS20830"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_418538.2"
/GO_function="GO:0016772 - transferase activity,
transferring phosphorus-containing groups [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="phosphoethanolamine transferase EptA"
/protein_id="WP_001298860.1"
/translation="MLKRLLKRPSLNLLAWLLLAAFYISICLNIAFFKQVLQALPLDS
LHNVLVFLSMPVVAFSVINIVLTLSSFLWLNRPLACLFILVGAAAQYFIMTYGIVIDR
SMIANIIDTTPAESYALMTPQMLLTLGFSGVLAALIACWIKIKPATSRLRSVLFRGAN
ILVSVLLILLVAALFYKDYASLFRNNKELVKSLSPSNSIVASWSWYSHQRLANLPLVR
IGEDAHRNPLMQNEKRKNLTILIVGETSRAENFSLNGYPRETNPRLAKDNVVYFPNTA
SCGTATAVSVPCMFSDMPREHYKEELAQHQEGVLDIIQRAGINVLWNDNDGGCKGACD
RVPHQNVTALNLPGQCINGECYDEVLFHGLEEYINNLQGDGVIVLHTIGSHGPTYYNR
YPPQFRKFTPTCDTNEIQTCSKEQLVNTYDNTLVYVDYIVDKAINLLKEHQDKFTTSL
VYLSDHGESLGENGIYLHGLPYAIAPDSQKQVPMLLWLSEDYQKRYQVDQNCLQKQAQ
TQHYSQDNLFSTLLGLTGVETKYYQAADDILQTCRRVSE"
gene 34500..35168
/gene="basR"
/locus_tag="A7629_RS20835"
CDS 34500..35168
/gene="basR"
/locus_tag="A7629_RS20835"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_313122.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="two-component system response regulator BasR"
/protein_id="WP_000697915.1"
/translation="MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAGH
YSLVVLDLGLPDEDGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKP
FALEELHARIRALLRRHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSR
LMLKAGSPVHREILYNDIYNWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVA
NEEN"
gene 35169..36269
/gene="pmrB"
/locus_tag="A7629_RS20840"
CDS 35169..36269
/gene="pmrB"
/locus_tag="A7629_RS20840"
/EC_number="2.7.13.3"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_709829.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="two-component system sensor histidine kinase
PmrB"
/protein_id="WP_001051093.1"
/translation="MNLMHFLRRPISLRQRLILTIGAILLVFELISVFWLWHESTEQI
QLFEQALRDNRNNDRHIMREIREAVASLIVPGVFMVSLTLFICYQAVRRITRPLAELQ
KELEARTADNLTPIAIHSATLEIEAVVSALNDLVSRLTSTLDNERLFTADVAHELRTP
LAGVRLHLELLAKTHHIDVAPLVARLDQMMESVSQLLQLARAGQSFSSGNYQHVKLLE
DVILPSYDELSTMLDQRQQTLLLPESAADITVQGDATLLRMLLRNLVENAHRYSPQGS
NIMIKLQEDGGAVMAVEDEGPGIDESKCGELSKAFVRMDSRYGGIGLGLSIVSRITQL
HHGQFFLQNRQETSGTRAWVRLKKDQNVANQI"
gene complement(36245..36334)
/gene="pmrR"
/locus_tag="A7629_RS20845"
CDS complement(36245..36334)
/gene="pmrR"
/locus_tag="A7629_RS20845"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000797656.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="LpxT activity modulator PmrR"
/protein_id="WP_000797656.1"
/translation="MKNRVYESLTTVFSVLVVSSFLYIWFATF"
gene complement(36446..37948)
/gene="proP"
/locus_tag="A7629_RS20850"
CDS complement(36446..37948)
/gene="proP"
/locus_tag="A7629_RS20850"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_709830.2"
/GO_component="GO:0016020 - membrane [Evidence IEA]"
/GO_function="GO:0022857 - transmembrane transporter
activity [Evidence IEA]"
/GO_process="GO:0055085 - transmembrane transport
[Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="glycine betaine/L-proline transporter ProP"
/protein_id="WP_001296882.1"
/translation="MLKRKKVKPITLRDVTIIDDGKLRKAITAASLGNAMEWFDFGVY
GFVAYALGKVFFPGADPSVQMVAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAIT
IVIMSISTFCIGLIPSYDTIGIWAPILLLICKMAQGFSVGGEYTGASIFVAEYSPDRK
RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLR
HALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKHWRSLLTCIGLVIATNVTYY
MLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVLLGSVA
LFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAA
FNISVLVAGLTPTLAAWLVESSQNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGAT
PAASDIQEAKEILVEHYDNIEQKIDNIDHEIADLQAKRTRLVQQHPRIDE"
gene complement(38212..39090)
/gene="rdcB"
/locus_tag="A7629_RS20855"
CDS complement(38212..39090)
/gene="rdcB"
/locus_tag="A7629_RS20855"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_418534.4"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="YjcZ-like family protein"
/protein_id="WP_000169168.1"
/translation="MTKTLLDGPGRVLESVYPRFLVDLAQGDDARLPQAHQQQFRERL
MQELLARVQLQTWTNGGMLNAPLSLRLTLVEKLASMLDPGHLALTQIAQHLALLQKMD
HRQHSAFPELPQQIAALYEWFSARCRWKEKALTQRGLLVQAGDQSEQIFTRWRAGAYN
AWSLPGRCFIVLEELRWGAFGDACRLGSPQAVALLLGDLRVKATQHLAESINAAPTTR
HYYHQWFASSTVPTGGDHADFLSWLGKWTTADKQPVCWSVTQRWQTVALGMPRLCSAQ
RLAGAMLEEIFSVNLA"
gene complement(39087..41315)
/gene="crfC"
/locus_tag="A7629_RS20860"
CDS complement(39087..41315)
/gene="crfC"
/locus_tag="A7629_RS20860"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_313118.1"
/GO_function="GO:0005525 - GTP binding [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="clamp-binding protein CrfC"
/protein_id="WP_000288619.1"
/translation="MYTQTLYELSQEAERLLQLSRQQLQLLEKMPLSVPGDDAPQLAL
PWSQPNIAERHAMLNNELRKISRLEMVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPM
TALPTLIRHTPGQKEPVLHFSHVAPIDRLIQKLQQRLRDCDIKHLTDVLEIDKDMRAL
MQRIENGVAFEKYYLGAQPIFHCLKSLNDLVRLAKALDVDFPFSAYAAIEHIPVIEVE
FVHLAGLESYPGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD
EEVREAILAVGQSVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVS
SMWGYLANRARHELANNGKLPPPEQQRWVEDFAHAALGRRWRHADLADLEHIRHAADQ
LWEDSLFAQPIQALLHAAYANASLYALRSAAHKLLNYAQQAREYLDFRAHGLNVACEQ
LRQNIHQVEESLQLLQLNQAQVSGEIKHEIELALTSANHFLRQQQDAVNAQLAALFQD
DSEPLSEIRTRCETLLQTAQNTISRDFTLRFAELESTLCRVLTDVIRPIEQQVKMELS
ESGFRPRFHFPVFHGAVPHFNTRQLFSAVISRQEATDEQSTRLGVVRETFSRWLNQPD
WGRGNEKSPTETVDYSVLQRALSAEVDLYCQQMAKVLAEQVDESVTAGMNTFFAEFAS
CLTELQTRLRESLALRQQNESVVRLMQQQLQRTVMTHGWIYTDAQLLRDDIQTLFTAE
RY"
CONTIG join(NLWA01000040.1:1..41488)
//