LOCUS NZ_NLOJ01000034 48028 bp DNA linear CON 27-APR-2024
DEFINITION Escherichia coli strain MOD1-EC5479
MOD1-EC5479_34_length_48028_cov_42.8068, whole genome shotgun
sequence.
ACCESSION NZ_NLOJ01000034 NZ_NLOJ01000000
VERSION NZ_NLOJ01000034.1
DBLINK BioProject: PRJNA224116
BioSample: SAMN05440340
Assembly: GCF_002230325.1
KEYWORDS WGS; RefSeq.
SOURCE Escherichia coli
ORGANISM Escherichia coli
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
Enterobacterales; Enterobacteriaceae; Escherichia.
REFERENCE 1 (bases 1 to 48028)
AUTHORS Gangiredla,J., Mammel,M.K., Barnaba,T.J., Tartera,C., Gebru,S.T.,
Patel,I.R., Leonard,S.R., Kotewicz,M.L., Lampel,K.A., Elkins,C.A.
and Lacher,D.W.
TITLE Species-Wide Collection of Escherichia coli Isolates for
Examination of Genomic Diversity
JOURNAL Genome Announc 5 (50), e01321-17 (2017)
PUBMED 29242221
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 48028)
AUTHORS Gangiredla,J., Barnaba,T., Gebru,S., Mammel,M.K., Lacher,D.,
Tartera,C., Patel,I.R., Leonard,S., Lampel,K.A. and Elkins,C.A.
TITLE Direct Submission
JOURNAL Submitted (29-JUN-2017) CFSAN-ORS-DM-MMSB, US Food and Drug
Administration, 5100 Paint Branch Parkway, College Park, MD 20740,
USA
COMMENT REFSEQ INFORMATION: The reference sequence is identical to
NLOJ01000034.1.
The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Method :: SPAdes v. 3.8.2
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 46.0x
Sequencing Technology :: Illumina NextSeq 500
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Name :: GCF_002230325.1-RS_2024_04_27
Annotation Date :: 04/27/2024 01:38:11
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 6.7
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA
Genes (total) :: 4,660
CDSs (total) :: 4,584
Genes (coding) :: 4,463
CDSs (with protein) :: 4,463
Genes (RNA) :: 76
rRNAs :: 3, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 2, 1, 1 (5S, 16S, 23S)
partial rRNAs :: 1 (5S)
tRNAs :: 61
ncRNAs :: 10
Pseudo Genes (total) :: 121
CDSs (without protein) :: 121
Pseudo Genes (ambiguous residues) :: 0 of 121
Pseudo Genes (frameshifted) :: 43 of 121
Pseudo Genes (incomplete) :: 76 of 121
Pseudo Genes (internal stop) :: 20 of 121
Pseudo Genes (multiple problems) :: 19 of 121
Pseudo Genes (short protein) :: 5 of 121
CRISPR Arrays :: 1
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..48028
/organism="Escherichia coli"
/mol_type="genomic DNA"
/submitter_seqid="MOD1-EC5479_34_length_48028_cov_42.8068"
/strain="MOD1-EC5479"
/isolation_source="water"
/db_xref="taxon:562"
/geo_loc_name="USA: NY"
/collection_date="1993-10-19"
/collected_by="Pennsylvania State University | Escherichia
coli Reference Center"
gene complement(107..742)
/gene="msrQ"
/locus_tag="BEG32_RS22260"
CDS complement(107..742)
/gene="msrQ"
/locus_tag="BEG32_RS22260"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_416481.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="protein-methionine-sulfoxide reductase
heme-binding subunit MsrQ"
/protein_id="WP_001240089.1"
/translation="MRLTAKQVTWLKVCLHLAGLLPFLWLVWAINHGGLGADPVKDIQ
HFTGRTALKFLLATLLITPLARYAKQPLLIRTRRLLGLWCFAWATLHLTSYALLELGV
NNLALLGKELITRPYLTLGIISWVILLALAFTSTQAMQRKLGKHWQQLHNFVYLVAIL
APIHYLWSVKIISPQPLIYAGLAVLLLALRYKKLLSLFNRLRKQVHNKLSL"
gene complement(743..1747)
/gene="msrP"
/locus_tag="BEG32_RS22265"
CDS complement(743..1747)
/gene="msrP"
/locus_tag="BEG32_RS22265"
/EC_number="1.8.5.-"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_310736.1"
/GO_function="GO:0043546 - molybdopterin cofactor binding
[Evidence IEA]; GO:0016667 - oxidoreductase activity,
acting on a sulfur group of donors [Evidence IEA]"
/GO_process="GO:0030091 - protein repair [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="protein-methionine-sulfoxide reductase catalytic
subunit MsrP"
/protein_id="WP_000740080.1"
/translation="MKKNQFLKESDVTAESVFFMKRRQVLKALGISAAALSLPHAAHA
DLLSWFKGNDRPPAPAGKALEFSKPAAWQNNLPLTPADKVSGYNNFYEFGLDKADPAA
NAGSLKTDPWTLKISGEVAKPLTLDHDDLTRRFPLEERIYRMRCVEAWSMVVPWIGFP
LHKLLALAEPTSNAKYVAFETIYAPEQMPGQQDRFIGGGLKYPYVEGLRLDEAMHPLT
LMTVGVYGKALPPQNGAPVRLIVPWKYGFKGIKSIVSIKLTRERPPTTWNLAAPDEYG
FYANVNPHVDHPRWSQATERFIGSGGILDVQRQPTLLFNGYAEQVASLYRGLDLRENF
"
gene complement(1856..2269)
/gene="hiuH"
/locus_tag="BEG32_RS22270"
CDS complement(1856..2269)
/gene="hiuH"
/locus_tag="BEG32_RS22270"
/EC_number="3.5.2.17"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_310735.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hydroxyisourate hydrolase"
/protein_id="WP_000920135.1"
/translation="MLKRYLVLSVVTAAFSLPSLVYAAQQNILSVHILNQQTGKPAAD
VTVTLEKKADNGWLQLNTAKTDKDGRIKALWPEQTVTTGDYRVVFKTGDYFKKQNLES
FFPEIPVEFHINKVNEHYHVPLLLSQYGYSTYRGS"
gene 2402..3073
/gene="hprR"
/locus_tag="BEG32_RS22275"
CDS 2402..3073
/gene="hprR"
/locus_tag="BEG32_RS22275"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_707854.2"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="response regulator transcription factor HprR"
/protein_id="WP_001339045.1"
/translation="MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDD
YALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPF
SFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLA
SRAGEIIPRTVIASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF
VAVKK"
gene 3073..4431
/gene="hprS"
/locus_tag="BEG32_RS22280"
CDS 3073..4431
/gene="hprS"
/locus_tag="BEG32_RS22280"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_416477.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="two-component system sensor histidine kinase
HprS"
/protein_id="WP_000826793.1"
/translation="MKRLSITVRLTLLFILLLSVAGAGIVWTLYNGLASELKWRDDTT
LINRTAQIKQLLIDGVNPDTLPVYFNRMMDVSQDILIIHGDSINKIVNRTNVSDGMLN
NIPATETISAAGIYRSIINDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKIN
SIIICIVAIILCSVLSPLLIRTGLREIKKLSGVTEALNYNDNREPVEVSALPRELKPL
GQALNKMHQALVKDFERLSQFADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIA
GNIEELENISRLTENILFLARADKNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICF
KVECNQQIFADKILLQRMLSNLIVNAIRYSPEKSRIQITSFLDTNGSLNIDIASPGTK
IHEPEKLFRRFWRGDNSRHSVGQGLGLSLVKAIAELHGGSATYHYLNKHNVFRITLPQ
RN"
gene complement(4538..5389)
/gene="hchA"
/locus_tag="BEG32_RS22285"
CDS complement(4538..5389)
/gene="hchA"
/locus_tag="BEG32_RS22285"
/EC_number="3.5.1.124"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_416476.1"
/GO_function="GO:0036524 - protein deglycase activity
[Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="glyoxalase III HchA"
/protein_id="WP_000218214.1"
/translation="MTVQTSKNPQVDIAEDNAFFPSEYSLSQYTSPVSDLDGVDYPKP
YRGKHKILVIAADERYLPTDNGKLFSTGNHPIETLLPLYHLHAAGFEFEVATISGLMT
KFEYWAMPHKDEKVMPFFEQHKSLFRNPKKLADVVASLNADSEYAAIFVPGGHGALIG
LPESQDVAAALQWAIKNDRFVISLCHGPAAFLALRHGDNPLNGYSICAFPDAADKQTP
EIGYMPGHLTWYFGEELKKMGMNIINDDITGRVHKDRKVLTGDSPFAANALGKLAAQE
MLAAYAG"
gene 5535..5771
/locus_tag="BEG32_RS25150"
CDS 5535..5771
/locus_tag="BEG32_RS25150"
/inference="COORDINATES: ab initio
prediction:GeneMarkS-2+"
/note="Derived by automated computational analysis using
gene prediction method: GeneMarkS-2+."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_071528350.1"
/translation="MLNIIHAKFSLLSYVVASGLNDFRPLSEVRGGGERFSAVEYRGA
DEYLYPGLAEKKLFSCTIFANISIWGAVLLQINS"
gene complement(5980..7053)
/locus_tag="BEG32_RS22295"
CDS complement(5980..7053)
/locus_tag="BEG32_RS22295"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000824385.1"
/GO_component="GO:0016020 - membrane [Evidence IEA]"
/GO_function="GO:0015288 - porin activity [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="porin"
/protein_id="WP_000824361.1"
/translation="MKRKVLAMLVPALLVAGAANAAEIYNKDGNKVDFYGKMVGERIW
SNTDDNNSENEDTSYARFGVKGETQITSELTGFGQFEYNLDASKPEGSNQEKTRLTFA
GLKYNELGSFDYGRNYGVAYDAAAYTDMLVEWGGDSWASADNFMNGRTNGVATYRNSD
FFGLVDGLNFAVQYQGKNSNRGVTKQNGDGYALSVDYNIEGFGFVGAYSKSDRTNEQA
GDGYGDNAEVWSLAAKYDANNIYAAMMYGETRNMTVLANDHFANKTQNFEAVVQYQFD
FGLRPSLGYVYSKGKDLYARDGHKGVDADRVNYIEVGTWYYFNKNMNVYTAYKFNLLD
KDDAAITDAATDDQFAVGIVYQF"
gene 7703..7984
/gene="drpB"
/locus_tag="BEG32_RS22300"
CDS 7703..7984
/gene="drpB"
/locus_tag="BEG32_RS22300"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_001295638.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="cell division protein DrpB"
/protein_id="WP_001297704.1"
/translation="MEERLSRSPGGKLALWAFYTWCGYFVWAMARYIWVMSRIPDAPV
SGFESDLGSTAGKWLGALVGFLFMALVGALLGSIAWYTRPRPARSRRYE"
gene 8024..8719
/gene="yedJ"
/locus_tag="BEG32_RS22305"
CDS 8024..8719
/gene="yedJ"
/locus_tag="BEG32_RS22305"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_416471.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="phosphohydrolase"
/protein_id="WP_000365573.1"
/translation="MDLQHWQAQFENWLKNHHQHQDAAHDVCHFRRVWATAQKLAADD
DVDMLVILTACYFHDIVSLAKNHPQRQRSSILAAEETRRLLREEFVQFPAEKIEAVCH
AIAAHSFSAQIAPLTTEAKIVQDADRLEALGAIGLARVFAVSGALGVALFDGEDPFAQ
HRPFDDKRYALDHFQTKLLKLPQTMQTARGKQLAQHNAQFLVEFMAKLSAELAGENEG
VDHKVIDAFSPAG"
gene 8786..10204
/gene="dcm"
/locus_tag="BEG32_RS22310"
CDS 8786..10204
/gene="dcm"
/locus_tag="BEG32_RS22310"
/EC_number="2.1.1.37"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_310726.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="DNA-cytosine methyltransferase"
/protein_id="WP_001157232.1"
/translation="MQENISVTDSYSTGNAAQAMLEKLLQIYDVKTLVAQLNGVGENH
WSAAILKRALANDSAWHRLSEKEFAHLQTLLPKPPAHHPHYAFRFIDLFAGIGGIRRG
FESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDITLSHKEGVSDEAAAEH
IRQHIPEHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQGTLFFDVVRIIDARRP
AIFVLENVKNLKSHDQGKTFRIIMQTLDELGYDVADADDNGPDDPKIIDGKHFLPQHR
ERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPVLWKYLYR
YAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEILIDRGWDMATGEKDFDDP
LNQQHRPRRLTPRECARLMGFEAPGEAKFRIPVSDTQAYRQFGNSVVVPVFAAVAKLL
EPKIKLAMALRQQEAQHGRRSR"
gene 10185..10655
/gene="vsr"
/locus_tag="BEG32_RS22315"
CDS 10185..10655
/gene="vsr"
/locus_tag="BEG32_RS22315"
/EC_number="3.1.-.-"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_416469.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="VSPR family DNA mismatch endonuclease"
/protein_id="WP_000785999.1"
/translation="MADVHDKATRSKNMRAIATRDTAIEKRLASLLTGQGLAFRVQDA
SLPGRPDFVVDEYRCVIFTHGCFWHHHHCYLFKVPATRTEFWLEKIGKNVERDRRDIS
RLQALGWRVLIVWECTLRGREKLTDEALSERLEEWICGEGASAQIDTQGIHLLA"
gene complement(10644..11564)
/gene="yedA"
/locus_tag="BEG32_RS22320"
CDS complement(10644..11564)
/gene="yedA"
/locus_tag="BEG32_RS22320"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_310724.1"
/GO_component="GO:0016020 - membrane [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="drug/metabolite exporter YedA"
/protein_id="WP_001212226.1"
/translation="MRFRQLLPLFGALFALYIIWGSTYFVIRIGVESWPPLMMAGVRF
LAAGILLLAFLLLRGHKLPPLRPLLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVV
VATVPLFTLCFSRLFGIKTRKLEWVGIAIGLAGIIMLNSGGNLSGNPWGAILILIGSI
SWAFGSVYGSRITLPVGMMAGAIEMLAAGVVLMIASMIAGEKLTALPSLSGFLAVGYL
ALFGSIIAINAYMYLIRNVSPALATSYAYVNPVVAVLLGTGLGGETLSKIEWLALGVI
VFAVVLVTLGKYLFPAKPVVAPVIQDASSE"
gene 11737..12654
/gene="yedI"
/locus_tag="BEG32_RS22325"
CDS 11737..12654
/gene="yedI"
/locus_tag="BEG32_RS22325"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_310723.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="DUF808 domain-containing protein"
/protein_id="WP_000922683.1"
/translation="MLLAGSSLLTLLDDIATLLDDISVMGKLAAKKTAGVLGDDLSLN
AQQVSGVRANRELPVVWGVAKGSLINKVILVPLALIISAFIPWAITPLLMIGGAFLCF
EGVEKVLHMLEARKHKEDPAQSQQRLEKLAAQDPLKFEKDKIKGAIRTDFILSAEIVA
ITLGIVAEAPLLNQVLVLSGIALVVTVGVYGLVGVIVKIDDLGYWLAEKSSALMQALG
KGLLIIAPWLMKALSIVGTLAMFLVGGGIVVHGIAPLHHAIEHFAGQQSAVVAMILPT
VLNLILGFIIGGIVVLGVKAVAKMRGQAH"
gene 12733..12915
/gene="yodC"
/locus_tag="BEG32_RS22330"
CDS 12733..12915
/gene="yodC"
/locus_tag="BEG32_RS22330"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_310722.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="YodC family protein"
/protein_id="WP_000009306.1"
/translation="MSFMVSEEVTVKEGGPRMIVTGYSSGMVECRWYDGYGVKREAFH
ETELVPGEGSRPAEEV"
gene 13086..14780
/gene="dgcQ"
/locus_tag="BEG32_RS22340"
CDS 13086..14780
/gene="dgcQ"
/locus_tag="BEG32_RS22340"
/EC_number="2.7.7.65"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_416465.2"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="cellulose biosynthesis regulator diguanylate
cyclase DgcQ"
/protein_id="WP_001353855.1"
/translation="MQHETKMENQSWLKKLARRLGPGHVVNLCFIVVLLFSTLLTWRE
VVVLEDAYISSQRNHLENVANALDKHLQYNVDKLIFLRNGMREALVAPLDFTSLRNAV
TEFEQHRDEHAWQIELNRRRTLPVNGVSDALVSEGNLLSRENESLDNEITAALEVGYL
LRLAHNSSSMVEQAMYVSRAGFYVSTQPTLFTRNVPTRYYGYVTQPWFIGHSQRENRH
RAVRWFTSQPEHASNTEPQVTVSVPVDSNNYWYGVLGMSIPVRTMQQFLRNAIDKNLD
GEYQLYDSKLRFLTSSNPDHPTGNIFDPRELALLAQAMEHDTRGGIRMNSRYVSWERL
DHFDGVLVRVHTLSEGVRGDFGSISIALTLLWALFTTMLLISWYVIRRMVSNMYVLQS
SLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPFSVIQVDLDHFKAINDRFGHQ
AGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASLTQAAEVAERIRLKLNEKE
MLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQAGRNRVFASDNA"
gene complement(14777..15592)
/gene="yedP"
/locus_tag="BEG32_RS22345"
CDS complement(14777..15592)
/gene="yedP"
/locus_tag="BEG32_RS22345"
/EC_number="3.1.3.70"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_310720.1"
/GO_function="GO:0050531 - mannosyl-3-phosphoglycerate
phosphatase activity [Evidence IEA]"
/GO_process="GO:0051479 - mannosylglycerate biosynthetic
process [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="mannosyl-3-phosphoglycerate phosphatase-related
protein"
/protein_id="WP_000949117.1"
/translation="MLSIQQPLLVFSDLDGTLLDSHSYDWQPAAPWLSRLREANVPVI
LCSSKTSAEMLYLQKTLGLQGLPLIAENGAVVQLAEQWQDIDGFPRIISGISHGEISQ
VLNTLREKEHFKFTTFDDVDDATIAEWTGLSRSQAALTQLHEASVTLIWRDSDERMAQ
FTTRLHELGLQFMQGARFWHVLDASAGKDQAANWIIATYQQLSGKRPTTLGLGDGPND
APLLEVMDYAVIVKGLNREGVHLHDEDPARVWRTQREGPEGWREGLDHFFSAR"
gene complement(15890..16117)
/gene="yodD"
/locus_tag="BEG32_RS22350"
CDS complement(15890..16117)
/gene="yodD"
/locus_tag="BEG32_RS22350"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_416463.4"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="peroxide/acid resistance protein YodD"
/protein_id="WP_000844800.1"
/translation="MKTAKEYSDTAKREVSVDVDALLAAINEISESEVHRSQNDSEHV
SVDGREYHTWRELADAFELDIHDFSVSEVNR"
gene 16280..16468
/gene="dsrB"
/locus_tag="BEG32_RS22360"
CDS 16280..16468
/gene="dsrB"
/locus_tag="BEG32_RS22360"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_310718.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="protein DsrB"
/protein_id="WP_000867217.1"
/translation="MKVNDRVTVKTDGGPRRPGVVLAVEEFSEGTMYLVSLEDYPLGI
WFFNEAGHQDGIFVEKAE"
gene complement(16512..17135)
/gene="rcsA"
/locus_tag="BEG32_RS22365"
CDS complement(16512..17135)
/gene="rcsA"
/locus_tag="BEG32_RS22365"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_310717.1"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/GO_process="GO:0006355 - regulation of DNA-templated
transcription [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="transcriptional regulator RcsA"
/protein_id="WP_000104001.1"
/translation="MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACD
SQRPSVVFINEDCFIHDASNSQRIKLIINQHPNTLFIVFMAIANVHFDEYLLVRKNLL
ISSKSIKPESLDDILGDILKKETTITSFLNMPTLSLSRTESSMLRMWMAGQGTIQISD
QMNIKAKTVSSHKGNIKRKIKTHNKQVIYHVVRLTDNVTNGIFVNMR"
gene complement(17425..18210)
/gene="fliR"
/locus_tag="BEG32_RS22370"
CDS complement(17425..18210)
/gene="fliR"
/locus_tag="BEG32_RS22370"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_310716.1"
/GO_component="GO:0016020 - membrane [Evidence IEA]"
/GO_process="GO:0044780 - bacterial-type flagellum
assembly [Evidence IEA]; GO:0006605 - protein targeting
[Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="flagellar biosynthetic protein FliR"
/protein_id="WP_000942314.1"
/translation="MLQVTSDQWLSWLSLYFWPLLRVLALISTAPILSERSVPKRVKL
GLAMMITFAIAPSLPANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEII
GLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIG
GEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGF
PLTLTVGISLMAALMPLIAPFCEHLFSEMFNLLADIISELPLI"
gene complement(18219..18488)
/gene="fliQ"
/locus_tag="BEG32_RS22375"
CDS complement(18219..18488)
/gene="fliQ"
/locus_tag="BEG32_RS22375"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_013365797.1"
/GO_component="GO:0009288 - bacterial-type flagellum
[Evidence IEA]"
/GO_process="GO:0001539 - cilium or flagellum-dependent
cell motility [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="flagellar biosynthesis protein FliQ"
/protein_id="WP_000187358.1"
/translation="MTPESVMMMGTEAMKVALALAAPLLLVALVTGLIISILQAATQI
NEMTLSFIPKIIAVFIAIIIAGPWMLNLLLDYVRTLFTNLPYIIG"
gene complement(18498..19235)
/gene="fliP"
/locus_tag="BEG32_RS22380"
CDS complement(18498..19235)
/gene="fliP"
/locus_tag="BEG32_RS22380"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_310714.1"
/GO_process="GO:0001539 - cilium or flagellum-dependent
cell motility [Evidence IEA]"
/note="The bacterial flagellar biogenesis protein FliP
forms a type III secretion system (T3SS)-type pore
required for flagellar assembly.; The bacterial flagellar
biogenesis protein FliP forms a type III secretion system
(T3SS)-type pore required for flagellar assembly; Derived
by automated computational analysis using gene prediction
method: Protein Homology."
/codon_start=1
/transl_table=11
/product="flagellar type III secretion system pore protein
FliP"
/protein_id="WP_001253450.1"
/translation="MRRLLSVAPVLLWLVTPLAFAQLPGITSQPLPGGGQSWSLPVQT
LVFITSLTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMS
PVIDKIYVDAYQPFSEEKISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQ
GPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIA
LPFKLMLFVLVDGWQLLVGSLAQSFYS"
gene complement(19235..19600)
/gene="fliO"
/locus_tag="BEG32_RS22385"
CDS complement(19235..19600)
/gene="fliO"
/locus_tag="BEG32_RS22385"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_310713.2"
/GO_process="GO:0044781 - bacterial-type flagellum
organization [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="flagellar biosynthetic protein FliO"
/protein_id="WP_001302429.1"
/translation="MNNHATVQSSAPVSAAPLLQVSGALIAIIALILAAAWLVKRLGF
APKRTGVNGLKISASASLGARERVVVVDVEDARLVLGVTAGQINLLHKLPPSAPTEEI
PQTDFQSVMKNLLKRSGRS"
gene complement(19603..20016)
/gene="fliN"
/locus_tag="BEG32_RS22390"
CDS complement(19603..20016)
/gene="fliN"
/locus_tag="BEG32_RS22390"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_310712.1"
/GO_component="GO:0009288 - bacterial-type flagellum
[Evidence IEA]"
/GO_function="GO:0003774 - cytoskeletal motor activity
[Evidence IEA]"
/GO_process="GO:0001539 - cilium or flagellum-dependent
cell motility [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="flagellar motor switch protein FliN"
/protein_id="WP_001282091.1"
/translation="MSDMNNPADDNNGAMDDLWAEALSEQKSTSGKSAADAVFQQFGG
GDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILIN
GYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR"
gene complement(20013..21017)
/gene="fliM"
/locus_tag="BEG32_RS22395"
CDS complement(20013..21017)
/gene="fliM"
/locus_tag="BEG32_RS22395"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_005127760.1"
/GO_component="GO:0009288 - bacterial-type flagellum
[Evidence IEA]"
/GO_process="GO:0001539 - cilium or flagellum-dependent
cell motility [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="flagellar motor switch protein FliM"
/protein_id="WP_001295641.1"
/translation="MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQR
RVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNL
NLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKL
ALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNIC
LPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQIL
KLKPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSLNEEQPK
"
gene complement(21022..21486)
/gene="fliL"
/locus_tag="BEG32_RS22400"
CDS complement(21022..21486)
/gene="fliL"
/locus_tag="BEG32_RS22400"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_310710.1"
/GO_component="GO:0009425 - bacterial-type flagellum basal
body [Evidence IEA]"
/GO_process="GO:0071973 - bacterial-type
flagellum-dependent cell motility [Evidence IEA];
GO:0006935 - chemotaxis [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="flagellar basal body-associated protein FliL"
/protein_id="WP_000133119.1"
/translation="MTDYAISKKSKRSLWIPILVFITLAACASAGYSYWHSHQVAAED
KAQQRVVPSPVFYALDTFTVNLGDADRVLYIGITLRLKDEATRSRLSEYLPEVRSRLL
LLFSRQDAAVLATEEGKKNLIAEIKTTLSTPLVAGQPKQDVTDVLYTAFILR"
gene complement(21591..22718)
/gene="fliK"
/locus_tag="BEG32_RS22405"
CDS complement(21591..22718)
/gene="fliK"
/locus_tag="BEG32_RS22405"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_416453.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="flagellar hook-length control protein FliK"
/protein_id="WP_000618055.1"
/translation="MIRIAPLITADVDIATLPGDKASDAAQDFLALLSEALTGEATTD
KATPQLLVATDKPTTKGEPLVSDIVSDAQQADLLIPVDETPPVINDEQSTSTPLTTAQ
TITLAAAADNNTAKDEKADDLNEDVTASLSALFAMLPGFDNTPKVTDAPSTVLPTEKP
TLFTKLTSAQLTTAQPDDAPGTPAQPLTPLIAEAQSKAEVISTPSSVTAAASPLITPH
QTQPLPTVAAPVLSAPLGSHEWQQSLSQHISLFTRQGQQSAELRLHPQDLGEVQISLK
VDDNQAQIQMVSPHQHVRAALEAALPVLRTQLAESGIQLGQSNISGESFSGQQQAASQ
QQQSQRTANHEPLAGEDDDTLPVPVSLQGRVTGNSGVDIFA"
gene complement(22715..23158)
/gene="fliJ"
/locus_tag="BEG32_RS22410"
CDS complement(22715..23158)
/gene="fliJ"
/locus_tag="BEG32_RS22410"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_310708.1"
/GO_component="GO:0009288 - bacterial-type flagellum
[Evidence IEA]; GO:0016020 - membrane [Evidence IEA]"
/GO_function="GO:0003774 - cytoskeletal motor activity
[Evidence IEA]"
/GO_process="GO:0071973 - bacterial-type
flagellum-dependent cell motility [Evidence IEA];
GO:0006935 - chemotaxis [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="flagellar export protein FliJ"
/protein_id="WP_000807584.1"
/translation="MAEHGALATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLID
YQNEYRNNLNSDMSAGMTSNRWINYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWR
EKKQRLQAWQTLQERQSTAALLAENRLDQKKMDEFAQRAAMRKPE"
gene complement(23177..24550)
/gene="fliI"
/locus_tag="BEG32_RS22415"
CDS complement(23177..24550)
/gene="fliI"
/locus_tag="BEG32_RS22415"
/EC_number="7.1.2.2"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_707826.1"
/GO_component="GO:0009288 - bacterial-type flagellum
[Evidence IEA]"
/GO_function="GO:0016887 - ATP hydrolysis activity
[Evidence IEA]"
/GO_process="GO:0001539 - cilium or flagellum-dependent
cell motility [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="flagellar protein export ATPase FliI"
/protein_id="WP_000213277.1"
/translation="MTTRLTRWLTTLDNFEAKMAQLPAVRRYGRLTRATGLVLEATGL
QLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVEGVLPGARVYAKNISAE
GLQSGKQLPLGPALLGRVLDGSGKPLDGLPFPDTTETGALITPPFNPLQRTPIEHVLD
TGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKD
FIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTR
YAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFYTVLTEGDD
QQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYARVRTFK
QLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQGIFERADWEASLQGLE
RIFPTVS"
gene complement(24550..25236)
/gene="fliH"
/locus_tag="BEG32_RS22420"
CDS complement(24550..25236)
/gene="fliH"
/locus_tag="BEG32_RS22420"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_416450.2"
/GO_component="GO:0009288 - bacterial-type flagellum
[Evidence IEA]"
/GO_function="GO:0003774 - cytoskeletal motor activity
[Evidence IEA]"
/GO_process="GO:0071973 - bacterial-type
flagellum-dependent cell motility [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="flagellar assembly protein FliH"
/protein_id="WP_001282659.1"
/translation="MSDNLPWKTWMPDDLAPPPAEFVPIVEPEETIIEEAEPSLEQQL
AQLQMQAHEQGYQAGIAEGRQQGHEQGYQEGLAQGLEQGLAEAKSQQAPIHARMQQLV
SEFQTTLDALDSVIASRLMQMALEAARQVIGQTPTVDNSALIKQIQQLLQQEPLFSGK
PQLRVHPDDLQRVDDMLGATLSLHGWRLRGDPTLHPGGCKVSADEGDLDASVATRWQE
LCRLAAPGVV"
gene complement(25229..26224)
/gene="fliG"
/locus_tag="BEG32_RS22425"
CDS complement(25229..26224)
/gene="fliG"
/locus_tag="BEG32_RS22425"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_310705.1"
/GO_component="GO:0009433 - bacterial-type flagellum basal
body, C ring [Evidence IEA]"
/GO_function="GO:0005198 - structural molecule activity
[Evidence IEA]"
/GO_process="GO:0006935 - chemotaxis [Evidence IEA];
GO:0001539 - cilium or flagellum-dependent cell motility
[Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="flagellar motor switch protein FliG"
/protein_id="WP_000067950.1"
/translation="MSNLTGTDKSVILLMTIGEDRAAEVFKHLSQREVQTLSAAMANV
TQISNKQLTDVLAEFEQEAEQFAALNINANDYLRSVLVKALGEERAASLLEDILETRD
TASGIETLNFMEPQSAADLIRDEHPQIIATILVHLKRAQAADILALFDERLRHDVMLR
IATFGGVQPAALAELTEVLNGLLDGQNLKRSKMGGVRTAAEIINLMKTQQEEAVITAV
REFDGELAQKIIDEMFLFENLVDVDDRSIQRLLQEVDSESLLIALKGAEQPLREKFLR
NMSQRAADILRDDLANRGPVRLSQVENEQKAILLIVRRLAETGEMVIGSGEDTYV"
gene complement(26217..27875)
/gene="fliF"
/locus_tag="BEG32_RS22430"
CDS complement(26217..27875)
/gene="fliF"
/locus_tag="BEG32_RS22430"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_310704.1"
/GO_component="GO:0009431 - bacterial-type flagellum basal
body, MS ring [Evidence IEA]"
/GO_function="GO:0005198 - structural molecule activity
[Evidence IEA]"
/GO_process="GO:0001539 - cilium or flagellum-dependent
cell motility [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="flagellar basal-body MS-ring/collar protein
FliF"
/protein_id="WP_000994438.1"
/translation="MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAK
APDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGL
PKGGAVGFELLDQEKFGISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPS
LFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLT
QSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTE
EQYRPNGDESQAALRSRQLNESEQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNN
RQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK
PLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPFNSSDESGGELPFWQQQAFIDQ
LMAAGRWLLVLLVAWLLWRKAVRPQLTRRAEAMKAVQQQAQAREEVEDAVEVRLSKDE
QLQQRRANQRLGAEVMSQRIREMSDNDPRVVALVIRQWINNDHE"
gene 28090..28404
/gene="fliE"
/locus_tag="BEG32_RS22435"
CDS 28090..28404
/gene="fliE"
/locus_tag="BEG32_RS22435"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_310703.1"
/GO_function="GO:0005198 - structural molecule activity
[Evidence IEA]"
/GO_process="GO:0001539 - cilium or flagellum-dependent
cell motility [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="flagellar hook-basal body complex protein FliE"
/protein_id="WP_001301376.1"
/translation="MSAIQGIEGVISQLQTTAMSARAQESLPQPTISFAGQLHAALDR
ISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQVRNKLVAAYQEVMSM
QV"
gene complement(28422..>28568)
/locus_tag="BEG32_RS25830"
/pseudo
CDS complement(28422..>28568)
/locus_tag="BEG32_RS25830"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_001140296.1"
/note="incomplete; partial in the middle of a contig;
missing N-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="integrase"
gene complement(28822..29301)
/gene="yedL"
/locus_tag="BEG32_RS22445"
CDS complement(28822..29301)
/gene="yedL"
/locus_tag="BEG32_RS22445"
/EC_number="2.3.-.-"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_416442.1"
/GO_function="GO:0008080 - N-acetyltransferase activity
[Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="GNAT family N-acetyltransferase"
/protein_id="WP_000494158.1"
/translation="MFTIKTDDLTHPAVQALVAYHISGMLQQSPPESSHALDVQKLRN
PAVTFWSVWEGEQLAGIGALKLLDDKHGELKSMRTAPNYLRRGVASLILRHILQVAHD
RCLHRLSLETGTQAGFTACHQLYLNHGFVDCEPFADYQLDPHSRFLSLTLCENNELP"
gene complement(29412..30080)
/gene="yedK"
/locus_tag="BEG32_RS22450"
CDS complement(29412..30080)
/gene="yedK"
/locus_tag="BEG32_RS22450"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_310697.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="SOS response-associated peptidase"
/protein_id="WP_000334570.1"
/translation="MCGRFAQSQTREDYLALLAEDIERDIPYDPEPIGKYNVAPGTKV
LLLSERDEHLHLDPVFWGYAPGWWDKPPLINARVETAATSRMFKPLWQHGRAICFADG
WFEWKKEGDKKQPYFIYRADGQPVFMAAIGSTPFERGDEAEGFLIVTAAADQGLVDIH
DRRPLVLSPEAAREWMRQEISGKEASEIAASGCVPANQFTWHPVSRAVGNVKNQGAEL
IQPV"
gene complement(30189..30422)
/gene="yedF"
/locus_tag="BEG32_RS22455"
CDS complement(30189..30422)
/gene="yedF"
/locus_tag="BEG32_RS22455"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_310696.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="sulfurtransferase-like selenium metabolism
protein YedF"
/protein_id="WP_000790504.1"
/translation="MKNIVPDYRLDMVGEPCPYPAVATLEAMPQLKKGEILEVVSDCP
QSINNIPLDARNHGYTVLDIQQDGPTIRYLIQK"
gene complement(30419..31624)
/gene="yedE"
/locus_tag="BEG32_RS22460"
CDS complement(30419..31624)
/gene="yedE"
/locus_tag="BEG32_RS22460"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_416439.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="selenium metabolism membrane protein YedE/FdhT"
/protein_id="WP_000118897.1"
/translation="MSWQQFKHAWLIKFWAPIPAVIAAGILSTYYFGITGTFWAVTGE
FTRWGGQLLQLFGVHAEEWGYFKIIHLEGSPLTRIDGMMILGMFGGCFAAALWANNVK
LRMPRSRIRIMQAIIGGIIAGFGARLAMGCNLAAFFTGIPQFSLHAWFFAIATAIGSW
FGARFTLLPIFRIPVKMQKVSAASPLTQKPDQARRRFRLGMLVFFGMLGWALLTAMNQ
PKLGLAMLFGVGFGLLIERAQICFTSAFRDMWITGRTHMAKAIIIGMAVSAIGIFSYV
QLGVEPKIMWAGPNAVIGGLLFGFGIVLAGGCETGWMYRAVEGQVHYWWVGLGNVIGS
TILAYYWDDFAPALATDWDKINLLKTFGPMGGLLVTYLLLFAALMLIIGWEKRFFRRA
APQTAKEIA"
gene 31811..32224
/gene="yedD"
/locus_tag="BEG32_RS22470"
CDS 31811..32224
/gene="yedD"
/locus_tag="BEG32_RS22470"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_310694.3"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="lipoprotein YedD"
/protein_id="WP_001353137.1"
/translation="MKKLAIAGALMLLAGCAEVENYNNVVKTPAPDWLAGYWQTKGPQ
SALVSPEAIGSLIVTKEGDTLDCRQWQRVIAVPGKLTLMSDDLTNVTVKRELYEVERD
GNTIEYDGMTMERVDRPTAECAAALDKAPLPTPLP"
gene complement(32258..33745)
/gene="amyA"
/locus_tag="BEG32_RS22475"
CDS complement(32258..33745)
/gene="amyA"
/locus_tag="BEG32_RS22475"
/EC_number="3.2.1.1"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_416437.1"
/GO_function="GO:0005509 - calcium ion binding [Evidence
IEA]; GO:0004553 - hydrolase activity, hydrolyzing
O-glycosyl compounds [Evidence IEA]"
/GO_process="GO:0005975 - carbohydrate metabolic process
[Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="alpha-amylase"
/protein_id="WP_001245703.1"
/translation="MRNPTLLQCFHWYYPEGGKLWPELAERADGFNDIGINMVWLPPA
YKGASGGYSVGYDSYDLFDLGEFDQKGSIPTKYGDKAQLLAAIDALKRNDIAVLLDVV
VNHKMGADEKEAIRVQRVNADDRTQIDEEIIECEGWTRYTFPARAGQYSQFIWDFKCF
SGIDHIENPDEDGIFKIVNDYTGEGWNDQVDDELGNFDYLMGENIDFRNHAVTEEIKY
WARWVMEQTQCDGFRLDAVKHIPAWFYKEWIEHVQEVAPKPLFIVAEYWSHEVDKLQT
YIDQVEGKTMLFDAPLQMKFHEASRMGRDYDMTQIFTGTLVEADPFHAVTLVANHDTQ
PLQALEAPVEPWFKPLAYALILLRENGVPSVFYPDLYGAHYEDVGGDGQTYPIDMPII
EQLDELILARQRFAHGVQTLFFDHPNCIAFSRSGTDEYPGCVVVMSNGDDGEKTIHLG
ENYGNKTWRDFLRNRQESVVTDENGEATFFCNGGSVSVWVIEEVI"
gene complement(33823..34188)
/gene="fliT"
/locus_tag="BEG32_RS22480"
CDS complement(33823..34188)
/gene="fliT"
/locus_tag="BEG32_RS22480"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_310692.1"
/GO_process="GO:0044780 - bacterial-type flagellum
assembly [Evidence IEA]; GO:1902209 - negative regulation
of bacterial-type flagellum assembly [Evidence IEA];
GO:0006605 - protein targeting [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="flagella biosynthesis regulatory protein FliT"
/protein_id="WP_001015036.1"
/translation="MNHAPHLYFAWQQLVEKSQLMLRLATEEQWDELIASEMAYVNAV
QEIAHLTEEVEPSTTMQEQLRPMLRLILDNESKVKQLLQIRMDELAKLVGQSSVQKSV
LSAYGDQGGFVLAPQDNLF"
gene complement(34188..34598)
/gene="fliS"
/locus_tag="BEG32_RS22485"
CDS complement(34188..34598)
/gene="fliS"
/locus_tag="BEG32_RS22485"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_310691.1"
/GO_component="GO:0009288 - bacterial-type flagellum
[Evidence IEA]"
/GO_process="GO:0001539 - cilium or flagellum-dependent
cell motility [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="flagellar export chaperone FliS"
/protein_id="WP_000270663.1"
/translation="MYAAKGTQAYAQIGVESAVMSASQQQLVTMLFDGVLSALVRARL
FMQDNNQQGKGVSLSKAINIIENGLRVSLDEESKDELTQNLIALYSYMVRRLLQANLR
NDVSAVEEVEALMRNIADAWKESLLSPSLIQDPV"
gene complement(34623..36029)
/gene="fliD"
/locus_tag="BEG32_RS22490"
CDS complement(34623..36029)
/gene="fliD"
/locus_tag="BEG32_RS22490"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_416434.1"
/GO_component="GO:0009288 - bacterial-type flagellum
[Evidence IEA]; GO:0009421 - bacterial-type flagellum
filament cap [Evidence IEA]"
/GO_process="GO:0007155 - cell adhesion [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="flagellar filament capping protein FliD"
/protein_id="WP_000146793.1"
/translation="MASISSLGVGSGLDLSSILDSLTAAQKATLTPISNQQSSFTAKL
SAYGTLKSALTTFQTANTALSKADLFSATSTTSSTTAFSATTAGNAIAGKYTISVTHL
AQAQTLTTRTTRDDTKTAIATSDSKLTIQQGGDKEPITIDISAANSSLSGIRDAINNA
KAGVSASIINVGNGEYRLSVTSNDTGLDNAMTLSVSGDDALQSFMGYDASASSNGMEV
SVAAQNAQLTVNNVAIENSSNTISDALENITLNLNDVTTGNQTLTITQDTSKAQTAIK
DWVNAYNSLIDTFSSLTKYTAVDAGADSQSSSNGALLGDSTLRTIQTQLKSMLSNTVS
SSNYKTLAQIGITTDPSDGKLELDADKLTAALKKDASGVGALIVGDGKKTGITTTIGS
NLTSWLSTTGIIKAATDGVSKTLNKLTKDYNAASDRIDAQVARYKEQFTQLDVLMTSL
NSTSSYLTQQFENNSNSK"
gene 36295..37983
/locus_tag="BEG32_RS22500"
CDS 36295..37983
/locus_tag="BEG32_RS22500"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_001602758.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="FliC/FljB family flagellin"
/protein_id="WP_000079748.1"
/translation="MAQVINTNSLSLITQNNINKNQSALSSSIERLSSGLRINSAKDD
AAGQAIANRFTSNIKGLTQAARNANDGISVAQTTEGALSEINNNLQRVRELTVQATTG
TNSQSDLDSIQDEIKSRLDEIDRVSGQTQFNGVNVLAKDGSMKIQVGANDGQTITIDL
KKIDSSTLNLTGFNVNGSGSVANTAATKADLTAAQLSAPGAADANGTVTYTVSAGYKE
STAADVIASIKDGSAPTSAITATINNGFGDSSALTSNDYTYDPAKGDFTYDVASSANN
TAAQVQSFLTPKAGDTANLKVTVGTTSVDVVLASDGKITAKDGSALYIDSTGNLTQNS
AGLTSAKLATLTGLQGSGVASTITTEDGTNIDIAANGNIGLTGVRISADSLQSATKST
GFTVGTGATGLTVGTDGKVTIGGTTAQSYTSKDGSLTTDNTTKLYLQKDGSVTNGSGK
AVYVEADGDFTTDAATKAATTTDPLKALDEAISQIDKFRSSLGAIQNRLDSAVTNLNN
TTTNLSEAQSRIQDADYATEVSNMSKAQIIQQAGNSVLAKANQVPQQVLSLLQG"
gene 38303..39022
/gene="fliA"
/locus_tag="BEG32_RS22505"
CDS 38303..39022
/gene="fliA"
/locus_tag="BEG32_RS22505"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_310688.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="RNA polymerase sigma factor FliA"
/protein_id="WP_001087467.1"
/translation="MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDL
LQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQ
AIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELV
TDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGE
SRVSQLHSQAIKRLRTKLGKL"
gene 39068..39619
/gene="fliZ"
/locus_tag="BEG32_RS22510"
CDS 39068..39619
/gene="fliZ"
/locus_tag="BEG32_RS22510"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_310687.2"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="flagella biosynthesis regulatory protein FliZ"
/protein_id="WP_001366384.1"
/translation="MMVQHLKRRPLSRYLKDFKHSQTHCAHCRKLLDRITLVRDGKIV
NKIEISRLDMLLDENGWQTEQKSWAALCRFCGDLHCKTQSDFFDIIGFKQFLFEQTEM
SPGTVREYVVRLRRLGNHLHEQNISLDQLQGGFLDEILAPWLPTTSTNNYRIALRKYQ
HYQRQTCTGLVQKSSSLPASDIY"
gene 39707..40507
/gene="tcyJ"
/locus_tag="BEG32_RS22515"
CDS 39707..40507
/gene="tcyJ"
/locus_tag="BEG32_RS22515"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_416430.1"
/GO_component="GO:0016020 - membrane [Evidence IEA]"
/GO_function="GO:0015276 - ligand-gated monoatomic ion
channel activity [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="cystine ABC transporter substrate-binding
protein"
/protein_id="WP_001295643.1"
/translation="MKLAHLGRQALMGVMAVALVAGMSVKSFADEGLLNKVKERGTLL
VGLEGTYPPFSFQGDDGKLTGFEVEFAQQLAKHLGVEASLKPTKWDGMLASLDSKRID
VVINQVTISDERKKKYDFSTPYTISGIQALVKKGNEGTIKTAADLKGKKVGVGLGTNY
EEWLRQNVQGVDVRTYDDDPTKYQDLRVGRIDAILVDRLAALDLVKKTNDTLAVTGEA
FSRQESGVALRKGNEDLLKAVNDAIAEMQKDGTLQALSEKWFGADVTK"
gene 40612..41598
/gene="dcyD"
/locus_tag="BEG32_RS22520"
CDS 40612..41598
/gene="dcyD"
/locus_tag="BEG32_RS22520"
/EC_number="4.4.1.15"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_416429.4"
/GO_function="GO:0019148 - D-cysteine desulfhydrase
activity [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="D-cysteine desulfhydrase"
/protein_id="WP_001128215.1"
/translation="MPLHNLTRFPRLEFIGAPTPLEYLPRFSDYLGREIFIKRDDVTP
MAMGGNKLRKLEFLAADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENP
IGTTAENYLTNGNRLLLDLFNTQIEMCDALTDPNAQLEELATRVEAQGFRPYVIPVGG
SNALGALGYVESALEIAQQCEGAVNISSVVVASGSAGTHAGLAVGLEHLMPESELIGV
TVSRSVADQLPKVVNLQQAIAKELELTASAEILLWDDYFAPGYGVPNDEGMEAVKLLA
RLEGILLDPVYTGKAMAGLIDGISQKRFKDEGPILFIHTGGAPALFAYHPHV"
gene 41613..42281
/gene="tcyL"
/locus_tag="BEG32_RS22525"
CDS 41613..42281
/gene="tcyL"
/locus_tag="BEG32_RS22525"
/EC_number="7.4.2.-"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_416428.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="cystine ABC transporter permease"
/protein_id="WP_001158220.1"
/translation="MQESIQLVIDSLPFLLKGAGYTLQLSIGGMFFGLLLGFILALMR
LSPIWPVRWLARFYISIFRGTPLIAQLFMIYYGLPQFGIELDPIPSAMIGLSLNTAAY
AAETLRAAISSIDKGQWEAAASIGMTPWQTMRRAILPQAARVALPPLSNSFISLVKDT
SLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWIMATVLSTLQNHFENQLNRQE
REPK"
gene 42278..43030
/gene="tcyN"
/locus_tag="BEG32_RS22530"
CDS 42278..43030
/gene="tcyN"
/locus_tag="BEG32_RS22530"
/EC_number="7.4.2.-"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_416427.1"
/GO_function="GO:0015424 - ABC-type amino acid transporter
activity [Evidence IEA]; GO:0005524 - ATP binding
[Evidence IEA]"
/GO_process="GO:0003333 - amino acid transmembrane
transport [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="L-cystine ABC transporter ATP-binding protein
TcyN"
/protein_id="WP_001272991.1"
/translation="MSAIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTT
LLRSINLLEQPEAGTITVGDITIDTARSLSQQKSLIRQLRQHVGFVFQNFNLFPHRTV
LENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALA
MRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMD
QGRIVEQGAAKALFADPEQPRTRQFLEKFLLQ"
gene 43260..43982
/gene="sdiA"
/locus_tag="BEG32_RS22535"
CDS 43260..43982
/gene="sdiA"
/locus_tag="BEG32_RS22535"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_310681.1"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/GO_process="GO:0006355 - regulation of DNA-templated
transcription [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="transcriptional regulator SdiA"
/protein_id="WP_001154271.1"
/translation="MQDTDFFSWRRTMLLRFQRMEAAEEVYHEIELQAQQLEYDYYSL
CVRHPVPFTRPKVAFYTNYPEAWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDDLFSE
AQPLWEAARAHGLRRGVTQYLMLPNRALGFLSFSRCSTREIPILSDELQLKMQLLVRE
SLMALMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNM
QKKINAPNKTQVACYAAATGLI"
gene complement(44049..44273)
/gene="yecF"
/locus_tag="BEG32_RS22540"
CDS complement(44049..44273)
/gene="yecF"
/locus_tag="BEG32_RS22540"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_416425.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="DUF2594 family protein YecF"
/protein_id="WP_000106474.1"
/translation="MSTPDFSTAENNQELANEVSCLKAMLTLMLQAMGQADAGRVMLK
MEKQLALIEDETQAAVFSKTVKQIKQAYRQ"
gene complement(44260..44436)
/gene="yecU"
/locus_tag="BEG32_RS25155"
CDS complement(44260..44436)
/gene="yecU"
/locus_tag="BEG32_RS25155"
/inference="COORDINATES: similar to AA
sequence:RefSeq:YP_009518796.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="protein YecU"
/protein_id="WP_000590347.1"
/translation="MIKIFIGHYINVFYSTADITLKKQPLLFLAKLMVYSAALTFFTA
NFHCNMTRKINEYA"
gene complement(<44519..44590)
/locus_tag="BEG32_RS25835"
/pseudo
CDS complement(<44519..44590)
/locus_tag="BEG32_RS25835"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_001302039.1"
/note="incomplete; partial in the middle of a contig;
missing C-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="transcriptional regulator"
gene 44732..45388
/gene="uvrY"
/locus_tag="BEG32_RS22545"
CDS 44732..45388
/gene="uvrY"
/locus_tag="BEG32_RS22545"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_310679.1"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/GO_process="GO:0000160 - phosphorelay signal transduction
system [Evidence IEA]; GO:0006355 - regulation of
DNA-templated transcription [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="UvrY/SirA/GacA family response regulator
transcription factor"
/protein_id="WP_000611328.1"
/translation="MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCR
ANAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIMLTVHTENPLPAKVMQAGAAGYL
SKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ
"
gene 45385..47217
/gene="uvrC"
/locus_tag="BEG32_RS22550"
CDS 45385..47217
/gene="uvrC"
/locus_tag="BEG32_RS22550"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_310678.2"
/GO_component="GO:0009380 - excinuclease repair complex
[Evidence IEA]"
/GO_function="GO:0009381 - excinuclease ABC activity
[Evidence IEA]"
/GO_process="GO:0006289 - nucleotide-excision repair
[Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="excinuclease ABC subunit UvrC"
/protein_id="WP_001283421.1"
/translation="MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLS
SYFRSNLASRKTEALVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSY
PFIFLSGDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYR
NRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETAS
QNLEFEEAARIRDQIQAVRRVTEKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKV
LGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLS
ELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEV
KRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRY
GKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLET
LFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGP
KRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLKH"
gene 47274..47822
/gene="pgsA"
/locus_tag="BEG32_RS22555"
CDS 47274..47822
/gene="pgsA"
/locus_tag="BEG32_RS22555"
/EC_number="2.7.8.5"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_310677.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="CDP-diacylglycerol--glycerol-3-phosphate
3-phosphatidyltransferase"
/protein_id="WP_001160187.1"
/translation="MQFNIPTLLTLFRVILIPFFVLVFYLPVTWSPFAAALIFCVAAV
TDWFDGFLARRWNQSTRFGAFLDPVADKVLVAIAMVLVTEHYHSWWVTLPAATMIARE
IIISALREWMAELGKRSSVAVSWIGKVKTTAQMVALAWLLWRPNIWVEYAGIALFFVA
AVLTLWSMLQYLSAARADLLDQ"
CONTIG join(NLOJ01000034.1:1..48028)
//