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Salmonella enterica subsp. enterica serovar Montevideo str. 609458-2 CFSAN000264_20, whole genome shotgun sequence

NCBI Reference Sequence: NZ_MAIW01000013.1

FASTA Graphics 

LOCUS       NZ_MAIW01000013         1452 bp    DNA     linear   CON 12-MAY-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Montevideo str.
            609458-2 CFSAN000264_20, whole genome shotgun sequence.
ACCESSION   NZ_MAIW01000013 NZ_MAIW01000000
VERSION     NZ_MAIW01000013.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN00990767
            Assembly: GCF_001707585.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Montevideo str.
            609458-2
  ORGANISM  Salmonella enterica subsp. enterica serovar Montevideo str.
            609458-2
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1452)
  AUTHORS   Hoffmann,M., Hurley,D., Fanning,S., Timme,R. and Payne,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JUN-2016) CFSAN-ORS-DM-MMSB, FDA Center for Food
            Safety and Applied Nutrition, 5100 Paint Branch Parkway, College
            Park, MD 20740, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MAIW01000013.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.7.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 20.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001707585.1-RS_2024_05_12
            Annotation Date                   :: 05/12/2024 01:13:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,550
            CDSs (total)                      :: 4,440
            Genes (coding)                    :: 4,299
            CDSs (with protein)               :: 4,299
            Genes (RNA)                       :: 110
            rRNAs                             :: 7, 4, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7 (5S)
            partial rRNAs                     :: 4, 6 (16S, 23S)
            tRNAs                             :: 76
            ncRNAs                            :: 17
            Pseudo Genes (total)              :: 141
            CDSs (without protein)            :: 141
            Pseudo Genes (ambiguous residues) :: 0 of 141
            Pseudo Genes (frameshifted)       :: 60 of 141
            Pseudo Genes (incomplete)         :: 101 of 141
            Pseudo Genes (internal stop)      :: 26 of 141
            Pseudo Genes (multiple problems)  :: 43 of 141
            Pseudo Genes (short protein)      :: 1 of 141
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1452
                     /organism="Salmonella enterica subsp. enterica serovar
                     Montevideo str. 609458-2"
                     /mol_type="genomic DNA"
                     /submitter_seqid="CFSAN000264_20"
                     /strain="609458-2"
                     /serovar="Montevideo"
                     /isolation_source="peppercorn"
                     /sub_species="enterica"
                     /db_xref="taxon:1173869"
     gene            <1..1449
                     /locus_tag="A7W92_RS09705"
                     /old_locus_tag="A7W92_22475"
     rRNA            <1..1449
                     /locus_tag="A7W92_RS09705"
                     /old_locus_tag="A7W92_22475"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
CONTIG      join(MAIW01000013.1:1..1452)
//
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