LOCUS NZ_KK227024 3873 bp DNA linear CON 05-NOV-2023
DEFINITION Staphylococcus aureus VET0063R adZEl-supercont1.39, whole genome
shotgun sequence.
ACCESSION NZ_KK227024 NZ_JIUU01000000
VERSION NZ_KK227024.1
DBLINK BioProject: PRJNA224116
BioSample: SAMN02403985
Assembly: GCF_000640735.1
KEYWORDS WGS; RefSeq.
SOURCE Staphylococcus aureus VET0063R
ORGANISM Staphylococcus aureus VET0063R
Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
Staphylococcaceae; Staphylococcus.
REFERENCE 1 (bases 1 to 3873)
AUTHORS Feldgarden,M., Price,L., Nordstrom,L., Larsen,J.,
Contente-Cuomo,T., Andersen,P., Young,S., Zeng,Q., Gargeya,S.,
Abouelleil,A., Alvarado,L., Chapman,S.B., Gainer-Dewar,J.,
Goldberg,J., Griggs,A., Gujja,S., Hansen,M., Howarth,C.,
Imamovic,A., Larimer,J., Murphy,C., Naylor,J., Pearson,M.,
Poon,T.W., Priest,M., Roberts,A., Saif,S., Shea,T., Sykes,S.,
Wortman,J., Nusbaum,C. and Birren,B.
CONSRTM The Broad Institute Genomics Platform, The Broad Institute Genome
Sequencing Center for Infectious Disease
TITLE The Genome Sequence of Staphylococcus aureus VET0063R
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3873)
AUTHORS Feldgarden,M., Price,L., Nordstrom,L., Larsen,J.,
Contente-Cuomo,T., Andersen,P., Young,S., Zeng,Q., Gargeya,S.,
Abouelleil,A., Alvarado,L., Chapman,S.B., Gainer-Dewar,J.,
Goldberg,J., Griggs,A., Gujja,S., Hansen,M., Howarth,C.,
Imamovic,A., Larimer,J., Murphy,C., Naylor,J., Pearson,M.,
Poon,T.W., Priest,M., Roberts,A., Saif,S., Shea,T., Sykes,S.,
Wortman,J., Nusbaum,C. and Birren,B.
CONSRTM The Broad Institute Genomics Platform, The Broad Institute Genome
Sequencing Center for Infectious Disease
TITLE Direct Submission
JOURNAL Submitted (07-APR-2014) Broad Institute of MIT and Harvard, 7
Cambridge Center, Cambridge, MA 02142, USA
COMMENT REFSEQ INFORMATION: The reference sequence is identical to
KK227024.1.
Please be aware that the annotation is done automatically with
little or no manual curation.
The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Method :: allpaths v. R48559
Assembly Name :: Stap_aure_VET0063R_V1
Genome Coverage :: 84.0x
Sequencing Technology :: Illumina
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Date :: 11/05/2023 01:25:16
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 6.6
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA
Genes (total) :: 2,850
CDSs (total) :: 2,784
Genes (coding) :: 2,677
CDSs (with protein) :: 2,677
Genes (RNA) :: 66
rRNAs :: 5, 4, 4 (5S, 16S, 23S)
complete rRNAs :: 5, 1, 2 (5S, 16S, 23S)
partial rRNAs :: 3, 2 (16S, 23S)
tRNAs :: 49
ncRNAs :: 4
Pseudo Genes (total) :: 107
CDSs (without protein) :: 107
Pseudo Genes (ambiguous residues) :: 0 of 107
Pseudo Genes (frameshifted) :: 47 of 107
Pseudo Genes (incomplete) :: 54 of 107
Pseudo Genes (internal stop) :: 28 of 107
Pseudo Genes (multiple problems) :: 18 of 107
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..3873
/organism="Staphylococcus aureus VET0063R"
/mol_type="genomic DNA"
/submitter_seqid="adZEl-supercont1.39"
/strain="VET0063R"
/host="Homo sapiens"
/db_xref="taxon:1422402"
/geo_loc_name="Netherlands"
/collection_date="2008-08-21"
gene complement(<1..2327)
/locus_tag="W401_RS17350"
/old_locus_tag="W401_02704"
CDS complement(<1..2327)
/locus_tag="W401_RS17350"
/old_locus_tag="W401_02704"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_001566815.1"
/GO_process="GO:0007155 - cell adhesion [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="fibrinogen-binding adhesin SdrG C-terminal
domain-containing protein"
/protein_id="WP_078098863.1"
/translation="MKSNLRYGIRKHKLGAASVFLGTMIVVGMGQEKEAAASEQNNTT
VEESGNSATESKASETQTTTNNVNTIDETQSYSATSTEQPSQSTQVTTEEAPTTVQAP
KAETSRVDLPSEKAADKGIVGTQVDTTQPSNVSEIKPRMKRSADVTAASEKEVVEEAK
VTGTDVTSKVKVEEGSEIVGHNNKETNVVNPHNAERVTLKYKWKFEDGIKPGDYFDFT
LSNNVETHGISPLRKVPDIKSKDGQVMAVGEVNEERKIRYTFKEYVQGKKDLKAELDL
NLFIDPTTVTKRGNQNIEVTLGEKKISKQFDIKYLDGVKDNWGVTVNGRIHTLNKQEG
RFSHFAYVKPNNQSLTSVTVTGQVTSGYKQNAKNPTVKVYKHIGSDELAESVYGDVLD
ETKFEDVTDKLSLTLTGNGGYTLDFSELDKTKNYVIKYEGDYNSSASDLNFQTKLSGY
HNYYYSYYPVQLTWNNGVAFYSNNAQGDGKDKPKEPIIEHSTPIELEFKSEPPMEKHE
LTGTVEESDDSKPIDFEYHTAVEGAEGHAEGTIETEEDSIHVDFEESTHENSKHHADV
VEYEEDTNPGGGQVTTESNLVEFDEESTKGIVTGAVSDHTTVEDTKEYTTESNLIELV
DELPEEHGQAQGPIEEITENNHHISHSGLGTENGHGNYGVIDEIEENSHVDIKSELGY
EGGQNSGNQSFEEDTEEDKPKYEQGGNIVDIDFDSVPQIHGQNNGNQSFEEDTEEDKP
KYEQGGNIIDIDFDSVPQIHGFNKHNEIIEEDTNK"
gene complement(3007..>3873)
/gene="fnbA"
/locus_tag="W401_RS17355"
/old_locus_tag="W401_02705"
/pseudo
CDS complement(3007..>3873)
/gene="fnbA"
/locus_tag="W401_RS17355"
/old_locus_tag="W401_02705"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000794614.1"
/note="incomplete; too short partial abutting assembly
gap; missing N-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="fibronectin-binding protein FnbA"
CONTIG join(JIUU01000042.1:1..3873)
//