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Geobacillus kaustophilus strain Et2/3 LG51_138, whole genome shotgun sequence

NCBI Reference Sequence: NZ_JYCF01000138.1

FASTA Graphics 

LOCUS       NZ_JYCF01000138         9406 bp    DNA     linear   CON 01-DEC-2024
DEFINITION  Geobacillus kaustophilus strain Et2/3 LG51_138, whole genome
            shotgun sequence.
ACCESSION   NZ_JYCF01000138 NZ_JYCF01000000
VERSION     NZ_JYCF01000138.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03025779
            Assembly: GCF_000948165.1
KEYWORDS    WGS; RefSeq.
SOURCE      Geobacillus kaustophilus
  ORGANISM  Geobacillus kaustophilus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae;
            Geobacillus; Geobacillus thermoleovorans group.
REFERENCE   1  (bases 1 to 9406)
  AUTHORS   Filippidou,S., Jeanneret,N., Russel-Delif,L., Junier,T.,
            Wunderlin,T., Molina,V., Johnson,S.L., Davenport,K.W., Chain,P.S.,
            Dorador,C. and Junier,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-DEC-2014) BioScience B11, Los Alamos National
            Laboratory, PO Box 1663 M888, Los Alamos, NM 87544, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JYCF01000138.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 14-MAR-2013
            Assembly Method        :: Velvet v. 1.2.08
            Assembly Name          :: BFA_3_A
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 480.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000948165.1-RS_2024_12_01
            Annotation Date                   :: 12/01/2024 19:53:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,744
            CDSs (total)                      :: 3,669
            Genes (coding)                    :: 3,518
            CDSs (with protein)               :: 3,518
            Genes (RNA)                       :: 75
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 65
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 151
            CDSs (without protein)            :: 151
            Pseudo Genes (ambiguous residues) :: 0 of 151
            Pseudo Genes (frameshifted)       :: 46 of 151
            Pseudo Genes (incomplete)         :: 118 of 151
            Pseudo Genes (internal stop)      :: 16 of 151
            Pseudo Genes (multiple problems)  :: 28 of 151
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9406
                     /organism="Geobacillus kaustophilus"
                     /mol_type="genomic DNA"
                     /submitter_seqid="LG51_138"
                     /strain="Et2/3"
                     /isolation_source="Water"
                     /db_xref="taxon:1462"
                     /geo_loc_name="Chile: El Tatio"
                     /collection_date="2011-05-09"
     gene            complement(188..628)
                     /locus_tag="LG51_RS17145"
     CDS             complement(188..628)
                     /locus_tag="LG51_RS17145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014194696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ImmA/IrrE family metallo-endopeptidase"
                     /protein_id="WP_044737253.1"
                     /translation="MANQIKQIVEKLVKKHGTNNPFEIASQKGIVLLFEQLGGIYGYH
                     HTFRRIQIIHINSELDEPMKRFVCAHELGHAVLHPELSTSFLRKHTFFCMDKVEREAN
                     EFAVELLLSDEVLYTYRGTNATIYEAAATYGVPSELIHLKKAVN"
     gene            complement(650..1096)
                     /locus_tag="LG51_RS17150"
     CDS             complement(650..1096)
                     /locus_tag="LG51_RS17150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015983480.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_044737254.1"
                     /translation="MSFPQRLRMLRKAKGLTQEELGRKVNVTKVSISGYESGNRTPDM
                     DTLKALADALDVSIDYLLGRDNIQPADTTLPALTEKDERDIQKELERIIKGLKTGNGF
                     AAFGGMDIDELDEEDRELLIASLENSLRLAKRIAKQKFTPKKHRKE"
     gene            1257..1493
                     /locus_tag="LG51_RS17155"
     CDS             1257..1493
                     /locus_tag="LG51_RS17155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013144063.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="WP_197072019.1"
                     /translation="MNKRREKLISIRKKEGMTLQEVADKVGISKPYYWQIEQGKRGLS
                     YEMAVKIARVFNKRPDDIFLVGELTYEEQKEGVK"
     gene            1490..2254
                     /locus_tag="LG51_RS17160"
     CDS             1490..2254
                     /locus_tag="LG51_RS17160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009362101.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage antirepressor KilAC domain-containing
                     protein"
                     /protein_id="WP_044737256.1"
                     /translation="MSNTPKVFKHEMFGELPVVVVGGVEWFGGVEAAKALGFLKPHDA
                     LANHVDEEDSAVHVVLTSGGRQSKKFINESGLYSLIFGAAKQGNNPEIREKAKQFKRW
                     VTAEVLPTIRKTGGYVANEDMFINTYLPFADEQTKLMFRGVLETVRRQNEQIAAMKPK
                     VEYFDALVDRNLLTNFRDTAKELQIKERFFIDWLLKNKFIYRDQKKKLKPYAAYVPEL
                     FELKEWERNGRADVQTLITPKGRETFRLLLKKEQTA"
     gene            2271..2432
                     /locus_tag="LG51_RS19545"
     CDS             2271..2432
                     /locus_tag="LG51_RS19545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_156133520.1"
                     /translation="MNIEQRLAELEQLVAKLEKKAADEATVIKDILPKPLDKERFERL
                     ISSFISRHE"
     gene            complement(2413..2688)
                     /locus_tag="LG51_RS17165"
     CDS             complement(2413..2688)
                     /locus_tag="LG51_RS17165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_044737257.1"
                     /translation="MKEKLQQIQEIFQVLDESLIKDIIEPKISNRIRNHYDTLIQLGL
                     KDDELISALVSVSVAESIRLSAFITVLLTNLDPNEPFDPRDFIHVVK"
     gene            2758..3027
                     /locus_tag="LG51_RS17170"
     CDS             2758..3027
                     /locus_tag="LG51_RS17170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011888092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF771 domain-containing protein"
                     /protein_id="WP_269430077.1"
                     /translation="MRNKVWWSMQDLKERTGYSEDWLKEHILLHPRYKPMLDIENGGF
                     VYYPKRKGERWCFIASRMEEFLQKHFRDIFTKKGDSHANQKIVVR"
     gene            2999..3274
                     /locus_tag="LG51_RS17175"
     CDS             2999..3274
                     /locus_tag="LG51_RS17175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_044737258.1"
                     /translation="MQIKKLSFDELPSRVTDEITARYKDIQPIEATVMEFETVAEPMY
                     AISLLDFDRNVIAELTFVDGKITHENRVTLRTVFKVMEKYPKRFGLE"
     gene            3293..3634
                     /locus_tag="LG51_RS17180"
     CDS             3293..3634
                     /locus_tag="LG51_RS17180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015985927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_231578677.1"
                     /translation="MTKEEKLRIRMQVSEILDRHCRWCQHKSYVSVCRQCPYGQQMQE
                     LSMPLWGSDADDDDPYFRATRTGSWEPEDDFYLINHYGVQPIEVISARTGRSIQSIHK
                     RIAKLKGGEPA"
     gene            3631..3837
                     /locus_tag="LG51_RS17185"
     CDS             3631..3837
                     /locus_tag="LG51_RS17185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015983485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_044737259.1"
                     /translation="MIEGVDTVHDGETFRKKRYKQLLREEIFLVGLAEVIKSNGDFEG
                     ARQVWARVWQTREARKLLRVRMPS"
     gene            3834..3965
                     /locus_tag="LG51_RS20350"
     CDS             3834..3965
                     /locus_tag="LG51_RS20350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_269430078.1"
                     /translation="MMIKVREWLQMSKEERFWLLENEAYRQWKERKNKNGSLAPENR"
     gene            4652..5617
                     /locus_tag="LG51_RS17190"
     CDS             4652..5617
                     /locus_tag="LG51_RS17190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012095067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqaJ viral recombinase family protein"
                     /protein_id="WP_044737260.1"
                     /translation="MKPIILAETANMNHLEWLHLRQKGIGGSDAAAIAGLNRYKSLIQ
                     VYYEKVEGVKESEPSEAAYWGAILEDIVAQEFSRRTGLKVRRRNAILRHPEYPFMIAN
                     VDRLVVGEDAGLECKTGSEYLKDEWVEGEKIPDQYFIQLQHYMAVTGRSKWYIAVLIG
                     GNKFRWDVIERDEEIINYLIEIEAEFWQRVIEKRPPEVDGSEASTNLLNLLYPVESVV
                     DDEAELPGEVDALIAELEAVNAEIKQKSEKKVEIENKIKALLGERERGRTNEYIVKWS
                     VVNSNRFDSKRFAKEHPDLYQQYIQTSTYRRFSISKNKSRKVVSQ"
     gene            5614..6489
                     /gene="recT"
                     /locus_tag="LG51_RS17195"
     CDS             5614..6489
                     /gene="recT"
                     /locus_tag="LG51_RS17195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015983438.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006259 - DNA metabolic process [Evidence
                     IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecT"
                     /protein_id="WP_044737261.1"
                     /translation="MTQAEKLKNQLATKVNGNGQATKKQDGGKVTVADLLQKMKPEFE
                     RALPKHMDADRLIRIALTEMRQNPALLSCEIKSLMGAIMQAAQLGLEPGLLGHCYLIP
                     FENKKRGTKEVQFVIGYKGLIDLVRRSGEVESIKAEAVYENDEFEFEYGLDEKLRHKP
                     LLFGDRGNLIGFYAYAKFKDGGHAFHVMSVEEINRIRDKHSKAKDKGPWKEEYEAMAK
                     KTVIRQLIKYLPISIEIQRNISLDETVRKDINEEPERVDYIDMEVEAIEGEVIEGDQI
                     EQEPVEQQELFNQGA"
     gene            6522..7460
                     /locus_tag="LG51_RS17200"
     CDS             6522..7460
                     /locus_tag="LG51_RS17200"
                     /inference="COORDINATES: protein motif:HMM:NF046476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_044737262.1"
                     /translation="MNDKLIVRSLKKKPFVIVEKAIVYDTKHLNIYDKMVYVVLCSFA
                     DNDTQQCFPSVSKLAEYCGCSVSTVKRSLKRLEKLGLIHIEQRQDENGRSETNVYTIL
                     ELPEFFQENQRNSQQNPPENANGYSGGVLTERVEVLSERGRGSHRPGEGFCENHKLYS
                     FNYTHLTKDNDDNKDRPKENGLNAFRFYEENFQPLSSVDIEILNYWLDRFPEEIVLCA
                     MRKALEQNVRRIKYIDRILANWEIQKVQTLEDVARLDRQYELEKQTKQKRGGVANGSI
                     CKHRGSNGRSSKEDERISHYEPGKWDDVDLSLEGLL"
     gene            7390..8127
                     /locus_tag="LG51_RS20205"
     CDS             7390..8127
                     /locus_tag="LG51_RS20205"
                     /inference="COORDINATES: protein motif:HMM:NF005378.0"
                     /GO_function="GO:0005524 - ATP binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="WP_331436821.1"
                     /translation="MKEFRITNQENGTTSTSPLKDSYKCEKCKDLGMIFIDNNTARVC
                     DCIAQRRIERLFKSSEISEAFRGLNFSNFSIDGRPQLVQDAFKCAVKYAKSFLGIRDS
                     RRNSIALLGAPGAGKTHLLTAVANNLIRNQVEVLYFPYREGFDEIKDDLESLEQKCER
                     MKAVEVLFIDDLFKRGATEFEIKTMYSVINYRYLNHKPIMVSSECLEDDLLEIDEALG
                     SRIIEMCRDYLVEIVGDRKLLNYRLAK"
     gene            8145..8426
                     /locus_tag="LG51_RS19845"
     CDS             8145..8426
                     /locus_tag="LG51_RS19845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_044737264.1"
                     /translation="MVTLFGFNGPAPFSTIFWHQNGEYVSKTICYTEEEEREAISRFY
                     TSNDFYSTFDAAVICREKRGQGLFKTEIRLDHHGHWNWRLLKKTISRWL"
     gene            8426..8608
                     /locus_tag="LG51_RS20555"
     CDS             8426..8608
                     /locus_tag="LG51_RS20555"
                     /inference="COORDINATES: protein motif:HMM:NF046381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_044737265.1"
                     /translation="MRCPICGGRTKVLDVREKQGKMKRRRECADCLTRFTTEEKVVME
                     SLDEYLIRRLNNFRTL"
     gene            8625..8798
                     /locus_tag="LG51_RS19550"
     CDS             8625..8798
                     /locus_tag="LG51_RS19550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_156133522.1"
                     /translation="MRISLDLSVLFDMQEALDHHIRRKQNIPAEGILRQYQLRGYRLV
                     NQYDPTDTQICKG"
     gene            8870..9328
                     /locus_tag="LG51_RS17220"
     CDS             8870..9328
                     /locus_tag="LG51_RS17220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014194720.1"
                     /GO_function="GO:0003700 - DNA-binding transcription
                     factor activity [Evidence IEA]"
                     /GO_process="GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArpU family phage packaging/lysis
                     transcriptional regulator"
                     /protein_id="WP_044737266.1"
                     /translation="MGKRYYQLSFLRDTDGEKTKEAVEAALEKYRMYMLTVQDELLPK
                     VTQTYSLVPPSQTNAFHSSTEDAAIKKVDFERERDEYMERIRRAVNRLNKMERELIIK
                     RYMCLEEPRDYDVYNEMGISESTFYRIREKAFYKLAFALRIEVYKEEAPV"
CONTIG      join(JYCF01000138.1:1..9406)
//
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