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NCBI Reference Sequence: NZ_JYCF01000138.1
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LOCUS NZ_JYCF01000138 9406 bp DNA linear CON 01-DEC-2024 DEFINITION Geobacillus kaustophilus strain Et2/3 LG51_138, whole genome shotgun sequence. ACCESSION NZ_JYCF01000138 NZ_JYCF01000000 VERSION NZ_JYCF01000138.1 DBLINK BioProject: PRJNA224116 BioSample: SAMN03025779 Assembly: GCF_000948165.1 KEYWORDS WGS; RefSeq. SOURCE Geobacillus kaustophilus ORGANISM Geobacillus kaustophilus Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Geobacillus; Geobacillus thermoleovorans group. REFERENCE 1 (bases 1 to 9406) AUTHORS Filippidou,S., Jeanneret,N., Russel-Delif,L., Junier,T., Wunderlin,T., Molina,V., Johnson,S.L., Davenport,K.W., Chain,P.S., Dorador,C. and Junier,P. TITLE Direct Submission JOURNAL Submitted (19-DEC-2014) BioScience B11, Los Alamos National Laboratory, PO Box 1663 M888, Los Alamos, NM 87544, USA COMMENT REFSEQ INFORMATION: The reference sequence is identical to JYCF01000138.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 14-MAR-2013 Assembly Method :: Velvet v. 1.2.08 Assembly Name :: BFA_3_A Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 480.0x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000948165.1-RS_2024_12_01 Annotation Date :: 12/01/2024 19:53:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,744 CDSs (total) :: 3,669 Genes (coding) :: 3,518 CDSs (with protein) :: 3,518 Genes (RNA) :: 75 rRNAs :: 3, 1, 1 (5S, 16S, 23S) complete rRNAs :: 3, 1 (5S, 16S) partial rRNAs :: 1 (23S) tRNAs :: 65 ncRNAs :: 5 Pseudo Genes (total) :: 151 CDSs (without protein) :: 151 Pseudo Genes (ambiguous residues) :: 0 of 151 Pseudo Genes (frameshifted) :: 46 of 151 Pseudo Genes (incomplete) :: 118 of 151 Pseudo Genes (internal stop) :: 16 of 151 Pseudo Genes (multiple problems) :: 28 of 151 CRISPR Arrays :: 5 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..9406 /organism="Geobacillus kaustophilus" /mol_type="genomic DNA" /submitter_seqid="LG51_138" /strain="Et2/3" /isolation_source="Water" /db_xref="taxon:1462" /geo_loc_name="Chile: El Tatio" /collection_date="2011-05-09" gene complement(188..628) /locus_tag="LG51_RS17145" CDS complement(188..628) /locus_tag="LG51_RS17145" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_014194696.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="ImmA/IrrE family metallo-endopeptidase" /protein_id="WP_044737253.1" /translation="MANQIKQIVEKLVKKHGTNNPFEIASQKGIVLLFEQLGGIYGYH HTFRRIQIIHINSELDEPMKRFVCAHELGHAVLHPELSTSFLRKHTFFCMDKVEREAN EFAVELLLSDEVLYTYRGTNATIYEAAATYGVPSELIHLKKAVN" gene complement(650..1096) /locus_tag="LG51_RS17150" CDS complement(650..1096) /locus_tag="LG51_RS17150" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_015983480.1" /GO_function="GO:0003677 - DNA binding [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="helix-turn-helix domain-containing protein" /protein_id="WP_044737254.1" /translation="MSFPQRLRMLRKAKGLTQEELGRKVNVTKVSISGYESGNRTPDM DTLKALADALDVSIDYLLGRDNIQPADTTLPALTEKDERDIQKELERIIKGLKTGNGF AAFGGMDIDELDEEDRELLIASLENSLRLAKRIAKQKFTPKKHRKE" gene 1257..1493 /locus_tag="LG51_RS17155" CDS 1257..1493 /locus_tag="LG51_RS17155" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_013144063.1" /GO_function="GO:0003677 - DNA binding [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="helix-turn-helix transcriptional regulator" /protein_id="WP_197072019.1" /translation="MNKRREKLISIRKKEGMTLQEVADKVGISKPYYWQIEQGKRGLS YEMAVKIARVFNKRPDDIFLVGELTYEEQKEGVK" gene 1490..2254 /locus_tag="LG51_RS17160" CDS 1490..2254 /locus_tag="LG51_RS17160" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_009362101.1" /GO_function="GO:0003677 - DNA binding [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="phage antirepressor KilAC domain-containing protein" /protein_id="WP_044737256.1" /translation="MSNTPKVFKHEMFGELPVVVVGGVEWFGGVEAAKALGFLKPHDA LANHVDEEDSAVHVVLTSGGRQSKKFINESGLYSLIFGAAKQGNNPEIREKAKQFKRW VTAEVLPTIRKTGGYVANEDMFINTYLPFADEQTKLMFRGVLETVRRQNEQIAAMKPK VEYFDALVDRNLLTNFRDTAKELQIKERFFIDWLLKNKFIYRDQKKKLKPYAAYVPEL FELKEWERNGRADVQTLITPKGRETFRLLLKKEQTA" gene 2271..2432 /locus_tag="LG51_RS19545" CDS 2271..2432 /locus_tag="LG51_RS19545" /inference="COORDINATES: ab initio prediction:GeneMarkS-2+" /note="Derived by automated computational analysis using gene prediction method: GeneMarkS-2+." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_156133520.1" /translation="MNIEQRLAELEQLVAKLEKKAADEATVIKDILPKPLDKERFERL ISSFISRHE" gene complement(2413..2688) /locus_tag="LG51_RS17165" CDS complement(2413..2688) /locus_tag="LG51_RS17165" /inference="COORDINATES: ab initio prediction:GeneMarkS-2+" /note="Derived by automated computational analysis using gene prediction method: GeneMarkS-2+." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_044737257.1" /translation="MKEKLQQIQEIFQVLDESLIKDIIEPKISNRIRNHYDTLIQLGL KDDELISALVSVSVAESIRLSAFITVLLTNLDPNEPFDPRDFIHVVK" gene 2758..3027 /locus_tag="LG51_RS17170" CDS 2758..3027 /locus_tag="LG51_RS17170" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_011888092.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DUF771 domain-containing protein" /protein_id="WP_269430077.1" /translation="MRNKVWWSMQDLKERTGYSEDWLKEHILLHPRYKPMLDIENGGF VYYPKRKGERWCFIASRMEEFLQKHFRDIFTKKGDSHANQKIVVR" gene 2999..3274 /locus_tag="LG51_RS17175" CDS 2999..3274 /locus_tag="LG51_RS17175" /inference="COORDINATES: ab initio prediction:GeneMarkS-2+" /note="Derived by automated computational analysis using gene prediction method: GeneMarkS-2+." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_044737258.1" /translation="MQIKKLSFDELPSRVTDEITARYKDIQPIEATVMEFETVAEPMY AISLLDFDRNVIAELTFVDGKITHENRVTLRTVFKVMEKYPKRFGLE" gene 3293..3634 /locus_tag="LG51_RS17180" CDS 3293..3634 /locus_tag="LG51_RS17180" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_015985927.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_231578677.1" /translation="MTKEEKLRIRMQVSEILDRHCRWCQHKSYVSVCRQCPYGQQMQE LSMPLWGSDADDDDPYFRATRTGSWEPEDDFYLINHYGVQPIEVISARTGRSIQSIHK RIAKLKGGEPA" gene 3631..3837 /locus_tag="LG51_RS17185" CDS 3631..3837 /locus_tag="LG51_RS17185" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_015983485.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_044737259.1" /translation="MIEGVDTVHDGETFRKKRYKQLLREEIFLVGLAEVIKSNGDFEG ARQVWARVWQTREARKLLRVRMPS" gene 3834..3965 /locus_tag="LG51_RS20350" CDS 3834..3965 /locus_tag="LG51_RS20350" /inference="COORDINATES: ab initio prediction:GeneMarkS-2+" /note="Derived by automated computational analysis using gene prediction method: GeneMarkS-2+." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_269430078.1" /translation="MMIKVREWLQMSKEERFWLLENEAYRQWKERKNKNGSLAPENR" gene 4652..5617 /locus_tag="LG51_RS17190" CDS 4652..5617 /locus_tag="LG51_RS17190" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_012095067.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="YqaJ viral recombinase family protein" /protein_id="WP_044737260.1" /translation="MKPIILAETANMNHLEWLHLRQKGIGGSDAAAIAGLNRYKSLIQ VYYEKVEGVKESEPSEAAYWGAILEDIVAQEFSRRTGLKVRRRNAILRHPEYPFMIAN VDRLVVGEDAGLECKTGSEYLKDEWVEGEKIPDQYFIQLQHYMAVTGRSKWYIAVLIG GNKFRWDVIERDEEIINYLIEIEAEFWQRVIEKRPPEVDGSEASTNLLNLLYPVESVV DDEAELPGEVDALIAELEAVNAEIKQKSEKKVEIENKIKALLGERERGRTNEYIVKWS VVNSNRFDSKRFAKEHPDLYQQYIQTSTYRRFSISKNKSRKVVSQ" gene 5614..6489 /gene="recT" /locus_tag="LG51_RS17195" CDS 5614..6489 /gene="recT" /locus_tag="LG51_RS17195" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_015983438.1" /GO_function="GO:0003677 - DNA binding [Evidence IEA]" /GO_process="GO:0006259 - DNA metabolic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="recombination protein RecT" /protein_id="WP_044737261.1" /translation="MTQAEKLKNQLATKVNGNGQATKKQDGGKVTVADLLQKMKPEFE RALPKHMDADRLIRIALTEMRQNPALLSCEIKSLMGAIMQAAQLGLEPGLLGHCYLIP FENKKRGTKEVQFVIGYKGLIDLVRRSGEVESIKAEAVYENDEFEFEYGLDEKLRHKP LLFGDRGNLIGFYAYAKFKDGGHAFHVMSVEEINRIRDKHSKAKDKGPWKEEYEAMAK KTVIRQLIKYLPISIEIQRNISLDETVRKDINEEPERVDYIDMEVEAIEGEVIEGDQI EQEPVEQQELFNQGA" gene 6522..7460 /locus_tag="LG51_RS17200" CDS 6522..7460 /locus_tag="LG51_RS17200" /inference="COORDINATES: protein motif:HMM:NF046476.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="helix-turn-helix domain-containing protein" /protein_id="WP_044737262.1" /translation="MNDKLIVRSLKKKPFVIVEKAIVYDTKHLNIYDKMVYVVLCSFA DNDTQQCFPSVSKLAEYCGCSVSTVKRSLKRLEKLGLIHIEQRQDENGRSETNVYTIL ELPEFFQENQRNSQQNPPENANGYSGGVLTERVEVLSERGRGSHRPGEGFCENHKLYS FNYTHLTKDNDDNKDRPKENGLNAFRFYEENFQPLSSVDIEILNYWLDRFPEEIVLCA MRKALEQNVRRIKYIDRILANWEIQKVQTLEDVARLDRQYELEKQTKQKRGGVANGSI CKHRGSNGRSSKEDERISHYEPGKWDDVDLSLEGLL" gene 7390..8127 /locus_tag="LG51_RS20205" CDS 7390..8127 /locus_tag="LG51_RS20205" /inference="COORDINATES: protein motif:HMM:NF005378.0" /GO_function="GO:0005524 - ATP binding [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="ATP-binding protein" /protein_id="WP_331436821.1" /translation="MKEFRITNQENGTTSTSPLKDSYKCEKCKDLGMIFIDNNTARVC DCIAQRRIERLFKSSEISEAFRGLNFSNFSIDGRPQLVQDAFKCAVKYAKSFLGIRDS RRNSIALLGAPGAGKTHLLTAVANNLIRNQVEVLYFPYREGFDEIKDDLESLEQKCER MKAVEVLFIDDLFKRGATEFEIKTMYSVINYRYLNHKPIMVSSECLEDDLLEIDEALG SRIIEMCRDYLVEIVGDRKLLNYRLAK" gene 8145..8426 /locus_tag="LG51_RS19845" CDS 8145..8426 /locus_tag="LG51_RS19845" /inference="COORDINATES: ab initio prediction:GeneMarkS-2+" /note="Derived by automated computational analysis using gene prediction method: GeneMarkS-2+." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_044737264.1" /translation="MVTLFGFNGPAPFSTIFWHQNGEYVSKTICYTEEEEREAISRFY TSNDFYSTFDAAVICREKRGQGLFKTEIRLDHHGHWNWRLLKKTISRWL" gene 8426..8608 /locus_tag="LG51_RS20555" CDS 8426..8608 /locus_tag="LG51_RS20555" /inference="COORDINATES: protein motif:HMM:NF046381.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_044737265.1" /translation="MRCPICGGRTKVLDVREKQGKMKRRRECADCLTRFTTEEKVVME SLDEYLIRRLNNFRTL" gene 8625..8798 /locus_tag="LG51_RS19550" CDS 8625..8798 /locus_tag="LG51_RS19550" /inference="COORDINATES: ab initio prediction:GeneMarkS-2+" /note="Derived by automated computational analysis using gene prediction method: GeneMarkS-2+." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_156133522.1" /translation="MRISLDLSVLFDMQEALDHHIRRKQNIPAEGILRQYQLRGYRLV NQYDPTDTQICKG" gene 8870..9328 /locus_tag="LG51_RS17220" CDS 8870..9328 /locus_tag="LG51_RS17220" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_014194720.1" /GO_function="GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]" /GO_process="GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="ArpU family phage packaging/lysis transcriptional regulator" /protein_id="WP_044737266.1" /translation="MGKRYYQLSFLRDTDGEKTKEAVEAALEKYRMYMLTVQDELLPK VTQTYSLVPPSQTNAFHSSTEDAAIKKVDFERERDEYMERIRRAVNRLNKMERELIIK RYMCLEEPRDYDVYNEMGISESTFYRIREKAFYKLAFALRIEVYKEEAPV" CONTIG join(JYCF01000138.1:1..9406) //
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