LOCUS NZ_JIKL01000020 39058 bp DNA linear CON 06-NOV-2023
DEFINITION Staphylococcus aureus VET0471R adZIW-supercont1.20, whole genome
shotgun sequence.
ACCESSION NZ_JIKL01000020 NZ_JIKL01000000
VERSION NZ_JIKL01000020.1
DBLINK BioProject: PRJNA224116
BioSample: SAMN02404265
Assembly: GCF_000683315.1
KEYWORDS WGS; RefSeq.
SOURCE Staphylococcus aureus VET0471R
ORGANISM Staphylococcus aureus VET0471R
Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
Staphylococcaceae; Staphylococcus.
REFERENCE 1 (bases 1 to 39058)
AUTHORS Feldgarden,M., Price,L., Nordstrom,L., Larsen,J.,
Contente-Cuomo,T., Andersen,P., Young,S., Zeng,Q., Gargeya,S.,
Abouelleil,A., Alvarado,L., Chapman,S.B., Gainer-Dewar,J.,
Goldberg,J., Griggs,A., Gujja,S., Hansen,M., Howarth,C.,
Imamovic,A., Larimer,J., Murphy,C., Naylor,J., Pearson,M.,
Poon,T.W., Priest,M., Roberts,A., Saif,S., Shea,T., Sykes,S.,
Wortman,J., Nusbaum,C. and Birren,B.
CONSRTM The Broad Institute Genomics Platform, The Broad Institute Genome
Sequencing Center for Infectious Disease
TITLE The Genome Sequence of Staphylococcus aureus VET0471R
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 39058)
AUTHORS Feldgarden,M., Price,L., Nordstrom,L., Larsen,J.,
Contente-Cuomo,T., Andersen,P., Young,S., Zeng,Q., Gargeya,S.,
Abouelleil,A., Alvarado,L., Chapman,S.B., Gainer-Dewar,J.,
Goldberg,J., Griggs,A., Gujja,S., Hansen,M., Howarth,C.,
Imamovic,A., Larimer,J., Murphy,C., Naylor,J., Pearson,M.,
Poon,T.W., Priest,M., Roberts,A., Saif,S., Shea,T., Sykes,S.,
Wortman,J., Nusbaum,C. and Birren,B.
CONSRTM The Broad Institute Genomics Platform, The Broad Institute Genome
Sequencing Center for Infectious Disease
TITLE Direct Submission
JOURNAL Submitted (07-APR-2014) Broad Institute of MIT and Harvard, 7
Cambridge Center, Cambridge, MA 02142, USA
COMMENT REFSEQ INFORMATION: The reference sequence is identical to
JIKL01000020.1.
The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Method :: allpaths v. R48559
Assembly Name :: Stap_aure_VET0471R_V1
Genome Coverage :: 86.0x
Sequencing Technology :: Illumina
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Date :: 11/06/2023 02:31:25
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 6.6
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA
Genes (total) :: 2,808
CDSs (total) :: 2,736
Genes (coding) :: 2,634
CDSs (with protein) :: 2,634
Genes (RNA) :: 72
rRNAs :: 4, 4, 4 (5S, 16S, 23S)
complete rRNAs :: 4, 1, 1 (5S, 16S, 23S)
partial rRNAs :: 3, 3 (16S, 23S)
tRNAs :: 56
ncRNAs :: 4
Pseudo Genes (total) :: 102
CDSs (without protein) :: 102
Pseudo Genes (ambiguous residues) :: 0 of 102
Pseudo Genes (frameshifted) :: 42 of 102
Pseudo Genes (incomplete) :: 54 of 102
Pseudo Genes (internal stop) :: 28 of 102
Pseudo Genes (multiple problems) :: 18 of 102
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..39058
/organism="Staphylococcus aureus VET0471R"
/mol_type="genomic DNA"
/submitter_seqid="adZIW-supercont1.20"
/strain="VET0471R"
/host="Homo sapiens"
/db_xref="taxon:1422682"
/geo_loc_name="Netherlands"
/collection_date="2009-10-11"
gene 1676..2140
/locus_tag="W681_RS15665"
/old_locus_tag="W681_02355"
CDS 1676..2140
/locus_tag="W681_RS15665"
/old_locus_tag="W681_02355"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000825946.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_000825946.1"
/translation="MKRLLGLLLASTLVLVACGNDENKEESKKEVKSKEKKIEKEKEN
KSKKDKEKEVATQQQPDNQTVEQPQSQEQSVQQPQQQLPQNSVPQQNAQVQQNKKQKV
DLNNMPPTDFSTEGMSEQAQKQIEELTMQKDYHGLSQREYNDRVSEIINNDN"
gene <2445..2655
/locus_tag="W681_RS18440"
/pseudo
CDS <2445..2655
/locus_tag="W681_RS18440"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_001561168.1"
/note="frameshifted; internal stop; incomplete; partial in
the middle of a contig; missing N-terminus; Derived by
automated computational analysis using gene prediction
method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="hypothetical protein"
gene <2882..2989
/locus_tag="W681_RS18445"
/pseudo
CDS <2882..2989
/locus_tag="W681_RS18445"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002456358.1"
/note="incomplete; partial in the middle of a contig;
missing N-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="integrase"
gene complement(3226..3314)
/locus_tag="W681_RS15670"
/old_locus_tag="W681_02356"
tRNA complement(3226..3314)
/locus_tag="W681_RS15670"
/old_locus_tag="W681_02356"
/product="tRNA-Ser"
/inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
/note="Derived by automated computational analysis using
gene prediction method: tRNAscan-SE."
/anticodon=(pos:complement(3277..3279),aa:Ser,seq:gga)
gene complement(3369..3440)
/locus_tag="W681_RS15675"
/old_locus_tag="W681_02357"
tRNA complement(3369..3440)
/locus_tag="W681_RS15675"
/old_locus_tag="W681_02357"
/product="tRNA-Glu"
/inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
/note="Derived by automated computational analysis using
gene prediction method: tRNAscan-SE."
/anticodon=(pos:complement(3405..3407),aa:Glu,seq:ttc)
gene complement(3442..3516)
/locus_tag="W681_RS15680"
/old_locus_tag="W681_02358"
tRNA complement(3442..3516)
/locus_tag="W681_RS15680"
/old_locus_tag="W681_02358"
/product="tRNA-Asn"
/inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
/note="Derived by automated computational analysis using
gene prediction method: tRNAscan-SE."
/anticodon=(pos:complement(3482..3484),aa:Asn,seq:gtt)
gene complement(3531..3604)
/locus_tag="W681_RS15685"
/old_locus_tag="W681_02359"
tRNA complement(3531..3604)
/locus_tag="W681_RS15685"
/old_locus_tag="W681_02359"
/product="tRNA-Gly"
/inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
/note="Derived by automated computational analysis using
gene prediction method: tRNAscan-SE."
/anticodon=(pos:complement(3570..3572),aa:Gly,seq:tcc)
gene complement(3620..3695)
/locus_tag="W681_RS15690"
/old_locus_tag="W681_02360"
tRNA complement(3620..3695)
/locus_tag="W681_RS15690"
/old_locus_tag="W681_02360"
/product="tRNA-His"
/inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
/note="Derived by automated computational analysis using
gene prediction method: tRNAscan-SE."
/anticodon=(pos:complement(3660..3662),aa:His,seq:gtg)
gene complement(3709..3781)
/locus_tag="W681_RS15695"
/old_locus_tag="W681_02361"
tRNA complement(3709..3781)
/locus_tag="W681_RS15695"
/old_locus_tag="W681_02361"
/product="tRNA-Phe"
/inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
/note="Derived by automated computational analysis using
gene prediction method: tRNAscan-SE."
/anticodon=(pos:complement(3746..3748),aa:Phe,seq:gaa)
gene complement(3798..3873)
/locus_tag="W681_RS15700"
/old_locus_tag="W681_02362"
tRNA complement(3798..3873)
/locus_tag="W681_RS15700"
/old_locus_tag="W681_02362"
/product="tRNA-Asp"
/inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
/note="Derived by automated computational analysis using
gene prediction method: tRNAscan-SE."
/anticodon=(pos:complement(3838..3840),aa:Asp,seq:gtc)
gene complement(3895..3968)
/locus_tag="W681_RS15705"
/old_locus_tag="W681_02363"
tRNA complement(3895..3968)
/locus_tag="W681_RS15705"
/old_locus_tag="W681_02363"
/product="tRNA-Met"
/inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
/note="Derived by automated computational analysis using
gene prediction method: tRNAscan-SE."
/anticodon=(pos:complement(3932..3934),aa:Met,seq:cat)
gene complement(4466..5020)
/locus_tag="W681_RS15710"
/old_locus_tag="W681_02364"
CDS complement(4466..5020)
/locus_tag="W681_RS15710"
/old_locus_tag="W681_02364"
/EC_number="3.-.-.-"
/inference="COORDINATES: similar to AA
sequence:RefSeq:YP_500457.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="RBBP9/YdeN family alpha/beta hydrolase"
/protein_id="WP_000132890.1"
/translation="MTDVIIVHSMHGNSRNHWYQWLEHNLTLEGYDVTLFNFESPEAK
TVDQWIEAMTKQINVRKKDTYFVTHGLGSITALKYIEMIDQPIEGFFSIAGFKEDAEN
IDLDIDLSNVTIDYDNIKKKVDNFYGLSSKNDKYVSYKETQRLMNALEGNLRIVEDGG
HFLEEDGFETFTALQDRMQDYMTR"
gene complement(5340..6740)
/gene="hemY"
/locus_tag="W681_RS15715"
/old_locus_tag="W681_02365"
CDS complement(5340..6740)
/gene="hemY"
/locus_tag="W681_RS15715"
/old_locus_tag="W681_02365"
/EC_number="1.3.3.4"
/inference="COORDINATES: similar to AA
sequence:RefSeq:YP_500459.1"
/GO_function="GO:0004729 - oxygen-dependent
protoporphyrinogen oxidase activity [Evidence IEA]"
/GO_process="GO:0006779 - porphyrin-containing compound
biosynthetic process [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="protoporphyrinogen oxidase"
/protein_id="WP_000167534.1"
/translation="MTKSVAIIGAGITGLSSAYFLKQQDPNIDVTIFEASNRPGGKIQ
SYRKDGYMIELGPESYLGRKTIMTELAKDIGLEQDIVTNKTGQSYIFAKNKLYPIPGG
SIMGIPTDIKPFVTTKLISPLGKLRAGLDLLKKPTQMRDGDISVGAFFRARLGNEVLE
NLIEPLMGGIYGTDIDKLSLMSTFPNFKEKEEAFGSLIKGMKDEKNKRLKQRQLYPGA
PKGQFKQFKHGLSSFIEALEQDVKNKGVTIRYNTSVDDIITSQKQYKIVYSNQQEDVF
DGVLVTTPHQVFLNWFGQDPAFDYFKTMDSTTVATVVLAFDEKDIENTYDGTGFVIAR
TSDTDITACTWTSKKWPFTTPEGKVLIRAYVGKPGDTVVDDHTDDKLVSIVRRDLSQM
MTFKGDPEFTIVNRLPKSMPQYHVGHIQQIRQIQAHIKQTYPRLRVTGASFEAVGLPD
CITQGKVAAEEVIAEL"
gene complement(6764..7687)
/gene="hemH"
/locus_tag="W681_RS15720"
/old_locus_tag="W681_02366"
CDS complement(6764..7687)
/gene="hemH"
/locus_tag="W681_RS15720"
/old_locus_tag="W681_02366"
/EC_number="4.98.1.1"
/inference="COORDINATES: similar to AA
sequence:RefSeq:YP_500460.1"
/GO_function="GO:0004325 - ferrochelatase activity
[Evidence IEA]"
/GO_process="GO:0006779 - porphyrin-containing compound
biosynthetic process [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="ferrochelatase"
/protein_id="WP_000162876.1"
/translation="MTKKMGLLVMAYGTPYKESDIEPYYTDIRHGKRPSEEELQDLKD
RYEFIGGLSPLAGTTDDQADALVSALNKAYADVEFKLYLGLKHISPFIEDAVEQMHKD
GITEAITVVLAPHYSSFSVGSYDKRADEEAAKYGIQLTHVKHYYKQPKFIEYWTNKVN
ETLAQIPEEEHKDTVLVVSAHSLPKGLIEKNNDPYPQELEHTALLIKEQSNIEHITIG
WQSEGNTGTPWLGPDVQDLTRDLYEKHQYKNFIYTPVGFVCEHLEVLYDNDYECKVVC
DDIGANYYRPKMPNTHPLFIGAIVDEIKSIF"
gene complement(7744..8781)
/gene="hemE"
/locus_tag="W681_RS15725"
/old_locus_tag="W681_02367"
CDS complement(7744..8781)
/gene="hemE"
/locus_tag="W681_RS15725"
/old_locus_tag="W681_02367"
/EC_number="4.1.1.37"
/inference="COORDINATES: similar to AA
sequence:RefSeq:YP_500461.1"
/GO_function="GO:0004853 - uroporphyrinogen decarboxylase
activity [Evidence IEA]"
/GO_process="GO:0006779 - porphyrin-containing compound
biosynthetic process [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="uroporphyrinogen decarboxylase"
/protein_id="WP_000233540.1"
/translation="MVHNKNNTILKMIKGEETTHTPVWFMRQAGRSQPEYRKLKEKYS
LFDITHQPELCAYVTHLPVDNYHTDAAILYKDIMTPLKPIGVDVEIKSGIGPVIHNPI
KTIQDVEKLSQIDPERDVPYVLDTIKLLTEEKLNVPLIGFTGAPFTLASYMIEGGPSK
NYNFTKAMMYRDEATWFALMNHLVDVSVKYVTAQVEAGAELIQIFDSWVGALNVEDYR
RYIKPHMIRLISEVKEKHDVPVILFGVGASHLINEWNDLPIDVLGLDWRTSINQAQQL
GVTKTLQGNLDPSILLAPWNVIEERLKPILDQGMENGKHIFNLGHGVFPEVQPETLRK
VSEFVHTYTQR"
gene complement(8771..8857)
/locus_tag="W681_RS0103910"
CDS complement(8771..8857)
/locus_tag="W681_RS0103910"
/inference="COORDINATES: similar to AA
sequence:RefSeq:YP_500462.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_031875110.1"
/translation="MYLLKIRTNERYDNIDKNDFNLGGLYGA"
gene 9043..9546
/gene="traP"
/locus_tag="W681_RS15730"
/old_locus_tag="W681_02368"
CDS 9043..9546
/gene="traP"
/locus_tag="W681_RS15730"
/old_locus_tag="W681_02368"
/inference="COORDINATES: similar to AA
sequence:RefSeq:YP_500463.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="signal transduction protein TRAP"
/protein_id="WP_000737983.1"
/translation="MKKLYTSYGTYGFLNQIKINNPSHHLFQFSTADSSVIFEETEEN
TVLKSPSIYEVIKEIGAFNEDHFYCAIFIPSTEDHVYQLEKKLISVDDNFKNFGGFKS
YRLLRPVKGTTYKIYFGFADRQTYEDFKNSDAFKDHFSKEALSHYFGSSGQHSSYFER
YLYPIKE"
gene complement(9670..10893)
/locus_tag="W681_RS15735"
/old_locus_tag="W681_02369"
CDS complement(9670..10893)
/locus_tag="W681_RS15735"
/old_locus_tag="W681_02369"
/inference="COORDINATES: similar to AA
sequence:RefSeq:YP_500464.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="ABC transporter permease EcsB"
/protein_id="WP_001245751.1"
/translation="MRNQATTLFNKRLHALRKEKNYFNKFIFNGHFMVFLLILLGAFI
FGYGEWLKHIPTNINFALIAAVIVALTSIFPMRPLLKEADKIFLLPFEKHMSQFMRHA
ILYSYFARILIQLIIVIVMFPLFYNINQHNVTFYICFGVSALIFPYVGLRLRWQWYQS
GLKTWQVNLISFIIFALTYYLLLAPKWYIALVMVALPVLIEFLVKKYKPGFLYPWEKM
IEIEHRHHMNYYKFVNMFTDVKHLKESAVRRSYLDILLPVPKGNKFNSNAMYLFLFIR
SFIRGRDAFNIIFRLVIIAVLLMVWLSYPLVTAIIGCLFVYIILLQMAQFYSQQAYGL
WPQVWPVPEEKVIKGYEQFLYRLMFVICTVFAVTFIIKHMTLFYVVLIFYIVGLLTIR
SIIKKLKYQETLLRD"
gene complement(10886..11626)
/locus_tag="W681_RS15740"
/old_locus_tag="W681_02370"
CDS complement(10886..11626)
/locus_tag="W681_RS15740"
/old_locus_tag="W681_02370"
/inference="COORDINATES: similar to AA
sequence:RefSeq:YP_500465.1"
/GO_function="GO:0005524 - ATP binding [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein EcsA"
/protein_id="WP_000216874.1"
/translation="MTVKVEQLTGGYGKRPVIKDINFELNKGEIVGLIGLNGAGKSTT
IKHMLGLLTPMEGSLSISDININDDIEAYRRKLSYIPESPVIYEELTLEEHIEMTAMA
YDIDRDEAMNRAMPLLKTFRLENELKVFPSHFSKGMKQKVMIICAFIVNPELYIIDEP
FLGLDPLGIQSMLDLMVEKKNEGRTVLMSTHILATAERYCDRFIILDEGEVVAFGDLE
ALRQQTGLHNQTLDDIYIHVTQGGDVHA"
gene 11760..12182
/locus_tag="W681_RS15745"
/old_locus_tag="W681_02371"
CDS 11760..12182
/locus_tag="W681_RS15745"
/old_locus_tag="W681_02371"
/inference="COORDINATES: similar to AA
sequence:RefSeq:YP_500466.1"
/GO_function="GO:1904047 - S-adenosyl-L-methionine binding
[Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="HIT family protein"
/protein_id="WP_000004984.1"
/translation="MSETIFGKILTGEIPSFKVYEDDYVYAFLDISQVTKGHTLLIPK
KASANIFETDEETMKHIGAALPKVANAIKRAFNPDGLNIIQNNGEFADQSVFHIHFHL
IPRYENDIDGFGYKWETHEDILDNNAKQQIAEQIQAQF"
gene 12324..12689
/locus_tag="W681_RS15750"
/old_locus_tag="W681_02372"
CDS 12324..12689
/locus_tag="W681_RS15750"
/old_locus_tag="W681_02372"
/inference="COORDINATES: similar to AA
sequence:RefSeq:YP_500467.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="YtxH domain-containing protein"
/protein_id="WP_000648118.1"
/translation="MKASRILFGIGVGVAAGFVVALQGRDDKSVKNNTIDRTAPTGSK
SELQREFETIKQSFNDILNYGVQIKNESAEFGSSIGGEIKSLLGNFKSDINPNIERLQ
SHIENLQNRGEDIGNEISK"
gene 13421..13979
/locus_tag="W681_RS15755"
/old_locus_tag="W681_02374"
/pseudo
CDS 13421..13979
/locus_tag="W681_RS15755"
/old_locus_tag="W681_02374"
/inference="COORDINATES: similar to AA
sequence:RefSeq:YP_500468.1"
/note="frameshifted; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="DUF3267 domain-containing protein"
gene 14184..15146
/locus_tag="W681_RS15760"
/old_locus_tag="W681_02375"
CDS 14184..15146
/locus_tag="W681_RS15760"
/old_locus_tag="W681_02375"
/EC_number="5.2.1.8"
/inference="COORDINATES: similar to AA
sequence:RefSeq:YP_500469.1"
/GO_function="GO:0003755 - peptidyl-prolyl cis-trans
isomerase activity [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="foldase protein PrsA"
/protein_id="WP_000782119.1"
/translation="MKMINKLIVPVTASALLLGACGASATDSKENTLISSKAGDVTVA
DTMKKIGKDQIANASFTEMLNKILADKYKNKVNDKKIDEQIEKMQKQYGGKDKFEKAL
QQQGLTADKYKENLRTAAYHKELLSDKIKISDSEIKEDSKKASHILIKVKSKKSDKEG
LDDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVLKGQTDKDFEK
ALFKLKDGEVSDVVKSSFGYHIIKADKPTDFNSEKQSLKEKLVDQKVQKNPKLLTDAY
KDLLKEYDVDFKDRDIKSVVEDKILNPEKLKQGGAQGGQSGMSQ"
gene complement(15267..16208)
/gene="yhaM"
/locus_tag="W681_RS15765"
/old_locus_tag="W681_02376"
CDS complement(15267..16208)
/gene="yhaM"
/locus_tag="W681_RS15765"
/old_locus_tag="W681_02376"
/inference="COORDINATES: similar to AA
sequence:RefSeq:YP_500470.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="3'-5' exoribonuclease YhaM"
/protein_id="WP_001244175.1"
/translation="MRNIENLNPGDSVDHFFLVHKATQGVTAQGKDYMTLHLQDKSGE
IEAKFWTATKNDMATIKPEEIVHVKGDIINYRGNKQMKVNQIRLATTEDQLKTEQFVD
GAPLSPAEIQEEISHYLLDIENANLQRITRHLLKKYQERFYTYPAASSHHHNFASGLS
YHVLTMLRIAKSICDIYPLLNKSLLYSGIILHDIGKVRELSGPVATSYTVEGNLLGHI
SIASDEVVEAARELNIEGEEIMLLRHMILSHHGKLEYGSPKLPYLKEAEILCYIDNID
ARMNMFEKAYKKTDKGQFTDKIFGLENRRFYNPESLD"
gene complement(16205..19141)
/locus_tag="W681_RS15770"
/old_locus_tag="W681_02377"
CDS complement(16205..19141)
/locus_tag="W681_RS15770"
/old_locus_tag="W681_02377"
/inference="COORDINATES: similar to AA
sequence:RefSeq:YP_500471.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="ATP-binding protein"
/protein_id="WP_000584628.1"
/translation="MIIKSLEIYGYGQFVQRKIEFNKNFTEIFGENEAGKSTIQAFIH
SILFGFPTKKSKEPRLEPRLGNQYGGKLVLILDDGLEIEVERIKGSAQGDVKVYLPNG
AVRDDAWLQKKLNYISKKTYQGIFSFDVLGLQDIHRNLNEKQLQDYLLQAGALGSTEF
TSMREVINRKKDELYKKSGKNPIINQQIEQLKQLESQIREEEAKLETYHRLVDDRDKS
SRRLENLKHNLNQLSKMHEEKQKEVALHDHSQEWKSLEQQLNIEPITFPEKGVDRYEK
ARAHKQSLERDIGLRNERLAQLKEEATQLEPVKQSDIDAFISLNQQENEIKNKEFELT
AIEKDIANKQRDKDELQANIGWSETHHDVDSSEAMKSYVSEQIKNKQEQAAYIKQLER
SLEENKIEDNAVHSELDSVEEKIVPEETFEKKKEYSQQVIELNEKENLYSKLKERFEI
EQQEKQKRQKLLRTTFILLTLVGIGLTAFSFISNNMLFGIIFAVLTLVFVIGIIMSKS
KEVDYSEAITDEIEEIKAQLAILDENYDLDFDLDEQYRIRDHWQQALKNKDILEEKRQ
YIEGRLNDAKGRHDELQSTVENVKDELYLSSKISNDLIVDSISTMANIKALDQHISDL
NQQRQQLVQELDTFYNHAEAVTKSQFVYFNKLSLFHDVQQWLKSAEDTNEKWRINAEN
TKLVTNELNHLNAQLEENNKEITALFDFINVGTEEDFYQHHEDYQTYTSNLSRFNDLT
KYLENQNYSYELSSSLSEKTTAQLEEEDHLLATQVDEYNEQYLEMQAQVSDLSAQINH
METDTTLANLRHEYHSLKNQLNDIAKDWASLSYLQSLVDEHIKQIKDKRLPQVINEAV
EILKHLTDGRYTMINYNEDSITVKHVNGQLYDPVELSQSTKELLYVALRISLIKVLRP
YYPFPLIVDDAFVHFDKKRTEKMLNYLRSLSEHYQVLYFTCVKDNIVPSKEVITLNKI
EEGGKR"
gene complement(19131..20327)
/locus_tag="W681_RS15775"
/old_locus_tag="W681_02378"
CDS complement(19131..20327)
/locus_tag="W681_RS15775"
/old_locus_tag="W681_02378"
/inference="COORDINATES: similar to AA
sequence:RefSeq:YP_500472.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="exonuclease SbcCD subunit D"
/protein_id="WP_000238216.1"
/translation="MVKFIHCSDLHLDSPFKSKSHISPKIFEDVQKSAYESFKNIVDI
ALQQDVDFVIIAGDLFDSENRTLRAEIFLKQQFERLQNEQIFIYVCHGNHDPLSSKIS
SNWPDNVSVFSNKVETYEAITKSGETIYIHGFSYENRASYENKIDEYPSSQGQKGIHI
GVLHGTYSKSSVNERYTEFILEDLNSKLYHYWALGHIHERQQLSDMPVINYSGNIQGR
HFNEQGEKGCLLIEGDHLKLKTKFYPTQYIRFEEATIETDKTSKQGLYEVIQNFKEQV
REEGKAFYRLTLVINSETLISPQDLLQVEEMITDYEENENQFVYIDELKIQYAQNDES
PLVNEFSAELLVDQTVFDKAMSDLYLNPRASKFLDDYGTFDHTALVNRAEEILKAEMR
GEQNDN"
gene complement(20624..20722)
/locus_tag="W681_RS0103915"
CDS complement(20624..20722)
/locus_tag="W681_RS0103915"
/inference="COORDINATES: similar to AA
sequence:RefSeq:YP_500473.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_002869660.1"
/translation="MSVGSLVVLTTTEIAFPTEIFEKNQRTQQIKF"
gene complement(21260..21604)
/locus_tag="W681_RS15780"
/old_locus_tag="W681_02379"
CDS complement(21260..21604)
/locus_tag="W681_RS15780"
/old_locus_tag="W681_02379"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002498160.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="YlbF/YmcA family competence regulator"
/protein_id="WP_000290301.1"
/translation="MAVNLYDYANQLEQALRESEEYKAIKEAFANVKANEESKKLFDE
FRETQINFQQKQMQGEEIAEEDLQKAQEQAQAIEKDENISALMNAEQKMSQVFQEINQ
IIVKPLDEIYAD"
gene complement(21673..22797)
/locus_tag="W681_RS15785"
/old_locus_tag="W681_02380"
CDS complement(21673..22797)
/locus_tag="W681_RS15785"
/old_locus_tag="W681_02380"
/inference="COORDINATES: similar to AA
sequence:RefSeq:YP_500475.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="DUF445 domain-containing protein"
/protein_id="WP_000992534.1"
/translation="MNALFIIIFMIVVGAIIGGITNVIAIRMLFHPFKPYYIFKFRVP
FTPGLIPKRREEIATKIGQVIEEHLLTETLINEKLKSKQSQQAIESMIQQQLQKLTKD
QLSIKQITSQIDIDLEQVLQTNGNQYIASQLNNYYTKHQNQTIASLLPNQLVTFLDQH
VDNATDLLCDRARNYLSSAKGTQDINDMLDTFFNEKGKLIGMLQMFMTKESIADRIQQ
ELIRLTSHPKARAIVTSLITNEYQTFKDKSLNGLLDASQFNEIAENLSVYVTTYASKQ
ANKPVVTLMPQFVDYLESQLSSKLANLIIEQLSIHLSTIMKKVDLRGLIEEQINTFDL
DYIEKLIIEIANKELKLIMSLGFILGGIIGFFQGLVAIFV"
gene complement(22976..23440)
/locus_tag="W681_RS15790"
/old_locus_tag="W681_02381"
CDS complement(22976..23440)
/locus_tag="W681_RS15790"
/old_locus_tag="W681_02381"
/inference="COORDINATES: similar to AA
sequence:RefSeq:YP_500476.1"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="helix-turn-helix transcriptional regulator"
/protein_id="WP_000375864.1"
/translation="MDRQSFTDLIQTKFKMVRIEAGYTQDTMAQTIGLSKKTLVQIEK
ERVLPNWTTCISICALFRDSEVLNSTFGCDPLEIVQTISRNHCAYPNHAPTSDIYWNN
IETRNGYILQSNKVSNIYRVLNPDNQPIFGTSKMREAETYFNRNAKEELVHI"
gene complement(23798..24421)
/locus_tag="W681_RS15795"
/old_locus_tag="W681_02382"
CDS complement(23798..24421)
/locus_tag="W681_RS15795"
/old_locus_tag="W681_02382"
/inference="COORDINATES: similar to AA
sequence:RefSeq:YP_500477.1"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/GO_process="GO:0000160 - phosphorelay signal transduction
system [Evidence IEA]; GO:0006355 - regulation of
DNA-templated transcription [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="response regulator transcription factor"
/protein_id="WP_001045136.1"
/translation="MNKVILVDDHYIVRQGLRFLLSTIENIEVLQDFADGETFLEYLK
EHEHPDIVLLDLVMPGMNGIEITEYIKAHYPHIKVLVLTSYVDDEHVISAINKGADGY
EMKDVEPQQLIETIRRVMNGEKMIHPKAQDVFETVSQKPHYTNKLSKREIEVLREMVK
GKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENKLI"
gene complement(24443..25555)
/locus_tag="W681_RS15800"
/old_locus_tag="W681_02383"
CDS complement(24443..25555)
/locus_tag="W681_RS15800"
/old_locus_tag="W681_02383"
/inference="COORDINATES: similar to AA
sequence:RefSeq:YP_500478.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="GAF domain-containing sensor histidine kinase"
/protein_id="WP_000437967.1"
/translation="MEQRTRLALLKEIAEFLNEETEMYSMTQGALKYLIEGSNFTTGW
IFFINSVGEHELVSHVALPQSLTADHCHYIKDGSCWCVKAFNQRRLMKASNIVNCSRI
NLASKAFPSQNDNITHHATVPLKSGQEQFGILNVASPNTEIYSDEDLELLESVAFQLG
SAIKRIYLTDREKEAAKINERNRLARDLHDSVNQMLFSVKLTAHAAYGMSNESIAKQA
FKTIEETSQNAVNEMRALIWQLKPVGLEQGLIHALTAYSKLMHIQLNVNVEGLIDLSN
EIEENIYRALQECINNVKKHADTNKMDLTLKQMNDILYIDVIDYGQGFEIDNVQIASS
HGINNIKQRVKLLRGKVTFHSQPTKGTQIQFTIPIK"
gene 25718..26539
/locus_tag="W681_RS15805"
/old_locus_tag="W681_02384"
CDS 25718..26539
/locus_tag="W681_RS15805"
/old_locus_tag="W681_02384"
/EC_number="5.4.99.-"
/inference="COORDINATES: similar to AA
sequence:RefSeq:YP_500479.1"
/GO_function="GO:0009982 - pseudouridine synthase activity
[Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]"
/GO_process="GO:0001522 - pseudouridine synthesis
[Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="RluA family pseudouridine synthase"
/protein_id="WP_000669380.1"
/translation="MKFKIPENFNDLSLRDIFQQLKVPKKDLHHLNMSKDITINDKPA
RLMDKVHTGDDVFVPTIDEKSNYVPSYRYAQIKYEDDDMAIVMKPKGVKTHPNDLKES
NTLMNHVIYTVDSDYVEPIHRLDQETVGLLIVAKNPLMKKILDRMLEDNDITRIYKAN
VKALLPLKPQTIDMPIGKDKFHSNKRRVSPTGQRAITHILTSKMIKETVCQLEIKLDT
GRTHQIRVHLAEIGHPVIGDPLYGDSTLRQLELESYKIEFVHPLTKEVISVSLDD"
gene complement(26994..28379)
/gene="fumC"
/locus_tag="W681_RS15810"
/old_locus_tag="W681_02385"
CDS complement(26994..28379)
/gene="fumC"
/locus_tag="W681_RS15810"
/old_locus_tag="W681_02385"
/EC_number="4.2.1.2"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000116229.1"
/GO_function="GO:0004333 - fumarate hydratase activity
[Evidence IEA]"
/GO_process="GO:0006099 - tricarboxylic acid cycle
[Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="class II fumarate hydratase"
/protein_id="WP_000116238.1"
/translation="MSVRIEHDTFGEIEVPADKYWGAQTERSKRNFPVGKERMPIEVV
YGFAQLKRAAALANFDLGKLSEAKKDAIVYACDQILSGELDEHFPLVVWQTGSGTQSN
MNVNEVVSYVANMYLKDHQSDESIHPNDDVNKSQSSNDTFPTAMHVALYQEVETKLEP
ALKLLRNTLKEKEDKFDSIIKIGRTHLQDATPIKLGQEISGWRYMLDRCETMLSESKK
HILNLAIGGTAVGTGINAHPEFGDKVAQYISENTGYPFVSSENKFHALTAHDEVVQLH
GTLKALAGDLMKIANDVRWLASGPRAGLAEISIPENEPGSSIMPGKVNPTQCEMLTMV
AVQVMGNDTVVGFASSQGNFELNVYKPVIMHNTLQSIYLLADGMETFNNNCAVGIEPI
EENIDNYLNQSLMLVTALNPHIGYEKAAQIAKKAHKEGLTLKESAIQTGYVTEEQFEA
WIKPEDMVDPH"
gene complement(28575..28970)
/locus_tag="W681_RS15815"
/old_locus_tag="W681_02386"
CDS complement(28575..28970)
/locus_tag="W681_RS15815"
/old_locus_tag="W681_02386"
/inference="COORDINATES: similar to AA
sequence:RefSeq:YP_500481.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_000901018.1"
/translation="MLGKYWIQLLIATVIISLISIKAFPLAIGALYLPIIFKVIKLQL
NLSKGLIDDVNAQTFIKSNQSGIVISVICCLLITGILYYTLDGFYASLTGVLGTLVAL
NPYTTIVSAILYILTAIATVEATKTKYRN"
gene complement(29513..29665)
/locus_tag="W681_RS15820"
/old_locus_tag="W681_02387"
CDS complement(29513..29665)
/locus_tag="W681_RS15820"
/old_locus_tag="W681_02387"
/inference="COORDINATES: similar to AA
sequence:RefSeq:YP_500483.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="SAS053 family DNA gyrase inhibitor"
/protein_id="WP_000031108.1"
/translation="MSKDKDPKLNYHEEENSMVTDFEDLKELGKEMEQISDQNDQEKN
SEEDSQ"
gene complement(29690..30289)
/locus_tag="W681_RS15825"
/old_locus_tag="W681_02388"
CDS complement(29690..30289)
/locus_tag="W681_RS15825"
/old_locus_tag="W681_02388"
/inference="COORDINATES: similar to AA
sequence:RefSeq:YP_500484.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="6-phosphogluconolactonase"
/protein_id="WP_001251224.1"
/translation="MAMNFKVFDNSQLVAEYAADIIRKQFNNNPTTIAGFHLDTDQAP
VLDELKKNVEKHAVDFSQINILDYDDKKSYFEALGVPAGQVYPIAYEKDAIELIADKI
KTKENKGKLTLQVVSIDEQGKLNVSIRQGLMEAREIFLVVTGANKRDVVEKLYQENGK
TSFEPADLKAHRMVNVILDKEAAAGLPEDVKAYFTSRFA"
gene complement(30448..30918)
/gene="trmL"
/locus_tag="W681_RS15830"
/old_locus_tag="W681_02389"
CDS complement(30448..30918)
/gene="trmL"
/locus_tag="W681_RS15830"
/old_locus_tag="W681_02389"
/EC_number="2.1.1.207"
/inference="COORDINATES: similar to AA
sequence:RefSeq:YP_500485.1"
/GO_function="GO:0008175 - tRNA methyltransferase activity
[Evidence IEA]"
/GO_process="GO:0006400 - tRNA modification [Evidence
IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="tRNA
(uridine(34)/cytosine(34)/5-
carboxymethylaminomethyluridine(34)-2'-O)-
methyltransferase TrmL"
/protein_id="WP_000181394.1"
/translation="MTNHIVLYQPEIPANTGNIARTCAGTNTHLHLIKPLGFRTDDKM
LKRAGLDYWEFVNITYHDSIEAFFEATNGEYYLLTKFGKKTYSDFDFSNHDKDFYFIF
GKETTGLPDWVKEKYQDTALRIPMSEHIRSLNLSNTAALLIYEALRQQDFPGLN"
gene complement(30923..32050)
/gene="queG"
/locus_tag="W681_RS15835"
/old_locus_tag="W681_02390"
CDS complement(30923..32050)
/gene="queG"
/locus_tag="W681_RS15835"
/old_locus_tag="W681_02390"
/EC_number="1.17.99.6"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000379983.1"
/GO_function="GO:0051539 - 4 iron, 4 sulfur cluster
binding [Evidence IEA]; GO:0052693 - epoxyqueuosine
reductase activity [Evidence IEA]"
/GO_process="GO:0008616 - queuosine biosynthetic process
[Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="tRNA epoxyqueuosine(34) reductase QueG"
/protein_id="WP_000379980.1"
/translation="MDTKQLKQDIIDYAYTIGIDSIGFTTADPFDELKQKLEAYHANG
YASGFEESDIALRTEPKLSLPTARSIIAIAVGYPNKLKGAPKSVRGDRRGLFARASWG
QDYHTIMRKRLDMLAAFIESKVPDVEIKSMVDTGVLSDRAVAERAGLGFVGRNGFVIN
PKLGTWTYLGEMLVSIPFEPDDPLLDSCGDCTICVDRCPTSALVGNGQLNSQKCISFL
TQTKGYMPDQYRYKIGNRLYGCDTCQQVCPKNRGINTEQDDIILEPEILKPRLVPLLR
MSNKEFKQTYGHLAGAWRGKKPIQRNAILALAHFNEVDAIPELKKVATTDERPMIRAT
AYWAIGQILGEEARDFINANYDQEDAEVQNEMIKGLDTRRE"
gene complement(32201..32923)
/locus_tag="W681_RS15840"
/old_locus_tag="W681_02391"
CDS complement(32201..32923)
/locus_tag="W681_RS15840"
/old_locus_tag="W681_02391"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_017465289.1"
/GO_function="GO:0140359 - ABC-type transporter activity
[Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA];
GO:0016887 - ATP hydrolysis activity [Evidence IEA];
GO:0042626 - ATPase-coupled transmembrane transporter
activity [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="amino acid ABC transporter ATP-binding protein"
/protein_id="WP_031774878.1"
/translation="MIKINNLNKVFGDNEVLKDINLEINQGEVVAIIGPSGSGKSTLL
RCMNLLEVPTKGQVIFEGNDLTEKRTQVDKLRQKMGMVFQNFNLFPHKKVVDNIILAP
KLLKKDNNDELHKEALSLLDKVGLKEKADVYPNQLSGGQKQRVAIARALAMHPDVILF
DEPTSALDPEVVGDVLKVMKDLAKEGMTMVVVTHEMGFAKDVSDKVIFMADGVVVESG
TPVEIFEQPQHERTQNFLARVL"
gene complement(32916..34373)
/locus_tag="W681_RS15845"
/old_locus_tag="W681_02392"
CDS complement(32916..34373)
/locus_tag="W681_RS15845"
/old_locus_tag="W681_02392"
/inference="COORDINATES: similar to AA
sequence:RefSeq:YP_500488.1"
/GO_component="GO:0055052 - ATP-binding cassette (ABC)
transporter complex, substrate-binding subunit-containing
[Evidence IEA]; GO:0005886 - plasma membrane [Evidence
IEA]"
/GO_process="GO:0015837 - amine transport [Evidence IEA]"
/note="The N-terminal region of this protein, as described
by TIGR01726, is a three transmembrane segment that
identifies a subfamily of ABC transporter permease
subunits, which specificities that include histidine,
arginine, glutamine, glutamate, L-cystine (sic), the
opines (in Agrobacterium) octopine and nopaline, etc.; The
N-terminal region of this protein, as described by
TIGR01726, is a three transmembrane segment that
identifies a subfamily of ABC transporter permease
subunits, which specificities that include histidine,
arginine, glutamine, glutamate, L-cystine (sic), the
opines (in Agrobacterium) octopine and nopaline, etc.; The
N-terminal region of this protein, as described by
TIGR01726, is a three transmembrane segment that
identifies a subfamily of ABC transporter permease
subunits, which specificities that include histidine,
arginine, glutamine, glutamate, L-cystine (sic), the
opines (in Agrobacterium) octopine and nopaline, etc;
Derived by automated computational analysis using gene
prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="ABC transporter permease subunit"
/protein_id="WP_000649908.1"
/translation="MKCLIRFILVLGLLISSAMVYINPTAHAEQDQTWEKIKERGELR
VGLSADYAPMEFEHTVNGKTEYAGVDIDLAKKIAKDNNLKLKIVNMSFDSLLGALKTG
KIDIIISGMTSTPERKKQVDFSDSYMMTKNIMLVKKDKVNEYKDIKDFNNKKVGAQKG
TEQEKIAQTEIENASITSLSRLPDVILALKSGKVEGAVVEKPVAEAYLKQNPKLGISN
VKFNEEEKDTVIAVPKDSPKLLSQINKTIKEVKDKGLIDKYMTNAANAMNDDSGFISK
YGSFFLKGIKITILISLIGVALGSILGAFVALMKLSKIKIISWIASIYIEILRGTPML
VQVFIVFFGITAALGLDISALVCGTIALVINSSAYIAEIIRAGINAVDKGQMEAARSL
GLNYRQTMKSVIMPQAIKNILPALGNEFVTLIKESSIVSTIGVGEIMFNAQVVQGISF
DPFTPLLVAAALYFVLTFVLTRIMNMIEGRLNASD"
gene complement(34630..35691)
/locus_tag="W681_RS15850"
/old_locus_tag="W681_02393"
CDS complement(34630..35691)
/locus_tag="W681_RS15850"
/old_locus_tag="W681_02393"
/inference="COORDINATES: similar to AA
sequence:RefSeq:YP_500489.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="PTS transporter subunit IIC"
/protein_id="WP_031796866.1"
/translation="MSNAKNADNKQFFSKVLNSIGAGVVIALVPNALLGEVLKIFKSG
NEILELTYQLVILIQSFMAFIIGVLAAHQFKFNGAGAAIVGTSAMIGSGAVVYSNNSF
MLKGIGDIINTSLVVIIACLIYMVLQNKLGSFELIILPVLVPIVSGGIGLITLPYIRK
ITQAIGNVIHSFTDLNPLLMSILISVAFSLLMVTPISLVAIATAISLNGLGSGAANLG
IVAACVTFLFGSLRVNSIGVNAVLLIGAAKMMIPVYLKNLIISIPLTINGIITGIIAY
VLQVKGTPLSAGFGYTGLVGPINAFNRMSGDPTMNIILLALGYFVIPFVSAFIVHELC
KKFIPIYSNDIYKFEVPKQ"
gene complement(36237..36320)
/locus_tag="W681_RS15855"
/old_locus_tag="W681_02394"
tRNA complement(36237..36320)
/locus_tag="W681_RS15855"
/old_locus_tag="W681_02394"
/product="tRNA-Leu"
/inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
/note="Derived by automated computational analysis using
gene prediction method: tRNAscan-SE."
/anticodon=(pos:complement(36284..36286),aa:Leu,seq:caa)
gene complement(36359..36433)
/locus_tag="W681_RS18120"
/old_locus_tag="W681_02395"
tRNA complement(36359..36433)
/locus_tag="W681_RS18120"
/old_locus_tag="W681_02395"
/product="tRNA-Gly"
/inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
/note="Derived by automated computational analysis using
gene prediction method: tRNAscan-SE."
/anticodon=(pos:complement(36398..36400),aa:Gly,seq:tcc)
gene complement(36537..36611)
/locus_tag="W681_RS15860"
/old_locus_tag="W681_02396"
tRNA complement(36537..36611)
/locus_tag="W681_RS15860"
/old_locus_tag="W681_02396"
/product="tRNA-Gly"
/inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
/note="Derived by automated computational analysis using
gene prediction method: tRNAscan-SE."
/anticodon=(pos:complement(36576..36578),aa:Gly,seq:tcc)
gene complement(36619..36692)
/locus_tag="W681_RS15865"
/old_locus_tag="W681_02397"
tRNA complement(36619..36692)
/locus_tag="W681_RS15865"
/old_locus_tag="W681_02397"
/product="tRNA-Cys"
/inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
/note="Derived by automated computational analysis using
gene prediction method: tRNAscan-SE."
/anticodon=(pos:complement(36658..36660),aa:Cys,seq:gca)
gene complement(36698..36769)
/locus_tag="W681_RS15870"
/old_locus_tag="W681_02398"
tRNA complement(36698..36769)
/locus_tag="W681_RS15870"
/old_locus_tag="W681_02398"
/product="tRNA-Gln"
/inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
/note="Derived by automated computational analysis using
gene prediction method: tRNAscan-SE."
/anticodon=(pos:complement(36735..36737),aa:Gln,seq:ttg)
gene complement(36781..36853)
/locus_tag="W681_RS15875"
/old_locus_tag="W681_02399"
tRNA complement(36781..36853)
/locus_tag="W681_RS15875"
/old_locus_tag="W681_02399"
/product="tRNA-His"
/inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
/note="Derived by automated computational analysis using
gene prediction method: tRNAscan-SE."
/anticodon=(pos:complement(36818..36820),aa:His,seq:gtg)
gene complement(36856..36929)
/locus_tag="W681_RS15880"
/old_locus_tag="W681_02400"
tRNA complement(36856..36929)
/locus_tag="W681_RS15880"
/old_locus_tag="W681_02400"
/product="tRNA-Trp"
/inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
/note="Derived by automated computational analysis using
gene prediction method: tRNAscan-SE."
/anticodon=(pos:complement(36895..36897),aa:Trp,seq:cca)
gene complement(36945..37025)
/locus_tag="W681_RS15885"
/old_locus_tag="W681_02401"
tRNA complement(36945..37025)
/locus_tag="W681_RS15885"
/old_locus_tag="W681_02401"
/product="tRNA-Tyr"
/inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
/note="Derived by automated computational analysis using
gene prediction method: tRNAscan-SE."
/anticodon=(pos:complement(36989..36991),aa:Tyr,seq:gta)
gene complement(37031..37106)
/locus_tag="W681_RS15890"
/old_locus_tag="W681_02402"
tRNA complement(37031..37106)
/locus_tag="W681_RS15890"
/old_locus_tag="W681_02402"
/product="tRNA-Thr"
/inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
/note="Derived by automated computational analysis using
gene prediction method: tRNAscan-SE."
/anticodon=(pos:complement(37071..37073),aa:Thr,seq:tgt)
gene complement(37114..37186)
/locus_tag="W681_RS15895"
/old_locus_tag="W681_02403"
tRNA complement(37114..37186)
/locus_tag="W681_RS15895"
/old_locus_tag="W681_02403"
/product="tRNA-Phe"
/inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
/note="Derived by automated computational analysis using
gene prediction method: tRNAscan-SE."
/anticodon=(pos:complement(37151..37153),aa:Phe,seq:gaa)
gene complement(37205..37280)
/locus_tag="W681_RS15900"
/old_locus_tag="W681_02404"
tRNA complement(37205..37280)
/locus_tag="W681_RS15900"
/old_locus_tag="W681_02404"
/product="tRNA-Asp"
/inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
/note="Derived by automated computational analysis using
gene prediction method: tRNAscan-SE."
/anticodon=(pos:complement(37245..37247),aa:Asp,seq:gtc)
gene complement(37290..37363)
/locus_tag="W681_RS15905"
/old_locus_tag="W681_02405"
tRNA complement(37290..37363)
/locus_tag="W681_RS15905"
/old_locus_tag="W681_02405"
/product="tRNA-Met"
/inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
/note="Derived by automated computational analysis using
gene prediction method: tRNAscan-SE."
/anticodon=(pos:complement(37327..37329),aa:Met,seq:cat)
gene complement(37378..37470)
/locus_tag="W681_RS15910"
/old_locus_tag="W681_02406"
tRNA complement(37378..37470)
/locus_tag="W681_RS15910"
/old_locus_tag="W681_02406"
/product="tRNA-Ser"
/inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
/note="Derived by automated computational analysis using
gene prediction method: tRNAscan-SE."
/anticodon=(pos:complement(37432..37434),aa:Ser,seq:tga)
gene complement(37509..37584)
/locus_tag="W681_RS15915"
/old_locus_tag="W681_02407"
tRNA complement(37509..37584)
/locus_tag="W681_RS15915"
/old_locus_tag="W681_02407"
/product="tRNA-Asp"
/inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
/note="Derived by automated computational analysis using
gene prediction method: tRNAscan-SE."
/anticodon=(pos:complement(37549..37551),aa:Asp,seq:gtc)
gene complement(37595..37684)
/locus_tag="W681_RS15920"
/old_locus_tag="W681_02408"
tRNA complement(37595..37684)
/locus_tag="W681_RS15920"
/old_locus_tag="W681_02408"
/product="tRNA-Ser"
/inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
/note="Derived by automated computational analysis using
gene prediction method: tRNAscan-SE."
/anticodon=(pos:complement(37646..37648),aa:Ser,seq:tga)
gene complement(37694..37767)
/locus_tag="W681_RS15925"
/old_locus_tag="W681_02409"
tRNA complement(37694..37767)
/locus_tag="W681_RS15925"
/old_locus_tag="W681_02409"
/product="tRNA-Ile"
/inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
/note="Derived by automated computational analysis using
gene prediction method: tRNAscan-SE."
/anticodon=(pos:complement(37731..37733),aa:Ile,seq:cat)
gene complement(37796..37869)
/locus_tag="W681_RS15930"
/old_locus_tag="W681_02410"
tRNA complement(37796..37869)
/locus_tag="W681_RS15930"
/old_locus_tag="W681_02410"
/product="tRNA-Met"
/inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
/note="Derived by automated computational analysis using
gene prediction method: tRNAscan-SE."
/anticodon=(pos:complement(37833..37835),aa:Met,seq:cat)
gene complement(37891..37966)
/locus_tag="W681_RS15935"
/old_locus_tag="W681_02411"
tRNA complement(37891..37966)
/locus_tag="W681_RS15935"
/old_locus_tag="W681_02411"
/product="tRNA-Ala"
/inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
/note="Derived by automated computational analysis using
gene prediction method: tRNAscan-SE."
/anticodon=(pos:complement(37931..37933),aa:Ala,seq:tgc)
gene complement(37984..38057)
/locus_tag="W681_RS15940"
/old_locus_tag="W681_02412"
tRNA complement(37984..38057)
/locus_tag="W681_RS15940"
/old_locus_tag="W681_02412"
/product="tRNA-Pro"
/inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
/note="Derived by automated computational analysis using
gene prediction method: tRNAscan-SE."
/anticodon=(pos:complement(38021..38023),aa:Pro,seq:tgg)
gene complement(38067..38140)
/locus_tag="W681_RS15945"
/old_locus_tag="W681_02413"
tRNA complement(38067..38140)
/locus_tag="W681_RS15945"
/old_locus_tag="W681_02413"
/product="tRNA-Arg"
/inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
/note="Derived by automated computational analysis using
gene prediction method: tRNAscan-SE."
/anticodon=(pos:complement(38104..38106),aa:Arg,seq:acg)
gene complement(38159..38247)
/locus_tag="W681_RS15950"
/old_locus_tag="W681_02414"
tRNA complement(38159..38247)
/locus_tag="W681_RS15950"
/old_locus_tag="W681_02414"
/product="tRNA-Leu"
/inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
/note="Derived by automated computational analysis using
gene prediction method: tRNAscan-SE."
/anticodon=(pos:complement(38211..38213),aa:Leu,seq:taa)
gene complement(38258..38332)
/locus_tag="W681_RS15955"
/old_locus_tag="W681_02415"
tRNA complement(38258..38332)
/locus_tag="W681_RS15955"
/old_locus_tag="W681_02415"
/product="tRNA-Gly"
/inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
/note="Derived by automated computational analysis using
gene prediction method: tRNAscan-SE."
/anticodon=(pos:complement(38298..38300),aa:Gly,seq:gcc)
gene complement(38336..38417)
/locus_tag="W681_RS15960"
/old_locus_tag="W681_02416"
tRNA complement(38336..38417)
/locus_tag="W681_RS15960"
/old_locus_tag="W681_02416"
/product="tRNA-Leu"
/inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
/note="Derived by automated computational analysis using
gene prediction method: tRNAscan-SE."
/anticodon=(pos:complement(38381..38383),aa:Leu,seq:tag)
gene complement(38421..38496)
/locus_tag="W681_RS15965"
/old_locus_tag="W681_02417"
tRNA complement(38421..38496)
/locus_tag="W681_RS15965"
/old_locus_tag="W681_02417"
/product="tRNA-Lys"
/inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
/note="Derived by automated computational analysis using
gene prediction method: tRNAscan-SE."
/anticodon=(pos:complement(38461..38463),aa:Lys,seq:ttt)
gene complement(38502..38577)
/locus_tag="W681_RS15970"
/old_locus_tag="W681_02418"
tRNA complement(38502..38577)
/locus_tag="W681_RS15970"
/old_locus_tag="W681_02418"
/product="tRNA-Thr"
/inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
/note="Derived by automated computational analysis using
gene prediction method: tRNAscan-SE."
/anticodon=(pos:complement(38542..38544),aa:Thr,seq:tgt)
gene complement(38594..38669)
/locus_tag="W681_RS15975"
/old_locus_tag="W681_02419"
tRNA complement(38594..38669)
/locus_tag="W681_RS15975"
/old_locus_tag="W681_02419"
/product="tRNA-Val"
/inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
/note="Derived by automated computational analysis using
gene prediction method: tRNAscan-SE."
/anticodon=(pos:complement(38634..38636),aa:Val,seq:tac)
gene complement(38681..38795)
/gene="rrf"
/locus_tag="W681_RS15980"
/old_locus_tag="W681_02420"
rRNA complement(38681..38795)
/gene="rrf"
/locus_tag="W681_RS15980"
/old_locus_tag="W681_02420"
/product="5S ribosomal RNA"
/inference="COORDINATES: nucleotide
motif:Rfam:14.4:RF00001"
/inference="COORDINATES: profile:INFERNAL:1.1.4"
/note="Derived by automated computational analysis using
gene prediction method: cmsearch."
/db_xref="RFAM:RF00001"
gene complement(38869..>39058)
/locus_tag="W681_RS0103930"
rRNA complement(38869..>39058)
/locus_tag="W681_RS0103930"
/product="23S ribosomal RNA"
/inference="COORDINATES: nucleotide
motif:Rfam:14.4:RF02541"
/inference="COORDINATES: profile:INFERNAL:1.1.4"
/note="Derived by automated computational analysis using
gene prediction method: cmsearch."
/db_xref="RFAM:RF02541"
CONTIG join(JIKL01000020.1:1..39058)
//