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NCBI Reference Sequence: NZ_JDTM01000020.1
FASTA Graphics
LOCUS NZ_JDTM01000020 29553 bp DNA linear CON 30-MAR-2024 DEFINITION Bifidobacterium pullorum subsp. saeculare DSM 6531 = LMG 14934 strain DSM 6531 contig20, whole genome shotgun sequence. ACCESSION NZ_JDTM01000020 NZ_JDTM01000000 VERSION NZ_JDTM01000020.1 DBLINK BioProject: PRJNA224116 BioSample: SAMN02442043 Assembly: GCF_000770965.1 KEYWORDS WGS; RefSeq. SOURCE Bifidobacterium pullorum subsp. saeculare DSM 6531 = LMG 14934 ORGANISM Bifidobacterium pullorum subsp. saeculare DSM 6531 = LMG 14934 Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium. REFERENCE 1 (bases 1 to 29553) AUTHORS Sun,Z., Zhang,W., Guo,C., Yang,X., Liu,W., Wu,Y., Song,Y., Kwok,L.Y., Cui,Y., Menghe,B., Yang,R., Hu,L. and Zhang,H. TITLE Comparative genomic analysis of 45 type strains of the genus Bifidobacterium: a snapshot of its genetic diversity and evolution JOURNAL PLoS One 10 (2), e0117912 (2015) PUBMED 25658111 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 29553) AUTHORS Zhang,H. TITLE Genomic characterization of the genus Lactobacillus JOURNAL Unpublished REFERENCE 3 (bases 1 to 29553) AUTHORS Zhang,H. TITLE Direct Submission JOURNAL Submitted (11-DEC-2013) School of Food Science and Engineering, Key Laboratory of Dairy Biotechnology and Engineering, Ministry of Education, Inner Mongolia Agricultural University, 306 Zhaowuda Road, Huhhot, Inner Mongolia 010018, China COMMENT REFSEQ INFORMATION: The reference sequence is identical to JDTM01000020.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2.01 Assembly Name :: DSM-6531 Genome Coverage :: 278.3x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000770965.1-RS_2024_03_30 Annotation Date :: 03/30/2024 00:54:19 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,895 CDSs (total) :: 1,835 Genes (coding) :: 1,797 CDSs (with protein) :: 1,797 Genes (RNA) :: 60 rRNAs :: 2, 1, 1 (5S, 16S, 23S) complete rRNAs :: 2, 1, 1 (5S, 16S, 23S) tRNAs :: 53 ncRNAs :: 3 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38 Pseudo Genes (frameshifted) :: 8 of 38 Pseudo Genes (incomplete) :: 34 of 38 Pseudo Genes (internal stop) :: 1 of 38 Pseudo Genes (multiple problems) :: 5 of 38 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..29553 /organism="Bifidobacterium pullorum subsp. saeculare DSM 6531 = LMG 14934" /mol_type="genomic DNA" /submitter_seqid="contig20" /strain="DSM 6531" /sub_species="saeculare" /culture_collection="DSM:6531" /type_material="type strain of Bifidobacterium saeculare" /db_xref="taxon:1437611" gene 292..1806 /locus_tag="OU28_RS08315" CDS 292..1806 /locus_tag="OU28_RS08315" /EC_number="2.7.8.-" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_004218308.1" /GO_component="GO:0005886 - plasma membrane [Evidence IEA]" /GO_function="GO:0016740 - transferase activity [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="sugar transferase" /protein_id="WP_051916085.1" /translation="MTFENTPFPETEQSIFRSIRRRPLWRYIYVAALVAVDVLVMLLS LVICFAFNPGAYDTVTRAMPIWAFLLAYCVIGLLCLAFAGAYHRHVMAEGYELYTKLI NAAIFTIVLASCVAFMLNLQLPRTALIIAPLVGLVCELVARWMMRCLLHHHRRRGECK YTTVIVGSSEGINRTLRLMRRNSALGYMPVAVCPIAPDPRMDDAYVVTNFVADPDIEG ADKLRVLSFGSRFARTIERMGVQEVYIADVLSRDSKLLHAMSLAIESLGIELAISVSL ADVGGHRLHLRNSAEQQVLIASLPQYRTTTYVIKRIIDIVLSAVALVISSPIMLGVAI AIKLDDGGPVLFKQTRVGIHGKPFTMYKFRSMVTNAEEIKAKLAAESGQTDRFIFKLK DDPRITKVGKFIRKTSLDEFPQFFNVFKGDMSLVGPRPALPDEVARYGSLYSTRLLVK PGITGPWQVSGRSDLSQEQSEFLDVSYIENWSITGDLAILAKTVMVVFRGTGSY" gene 2202..3482 /locus_tag="OU28_RS09305" CDS 2202..3482 /locus_tag="OU28_RS09305" /inference="COORDINATES: protein motif:HMM:NF024594.4" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DUF4012 domain-containing protein" /protein_id="WP_238556959.1" /translation="MRDHELAAVEAVSGLQDVSQLRDADTMNAAIEQAQVHASAAKEI ADGALWRVASYVPVLGDDVTAVRGMVDVVDGMVGETLPSLASTVQTLMNSGLSGGGEG QLNLQPIVDAQDGFSKVNELVQQQADAINALPQPHVGVVRSAYEQGKEQINKVADMLD QVNGMVQAMPKLLGQDGPRTYLLVAQTTSEQRSGGGLVGSLGTMQVDNGNISVGEFHS NKEFLTLGESATAEEHDVFSDPLYFSFDVRDLFAVPDFSRTAEMLNTVWQRSEYACDI DGVIAIDPLFIQEMVRINGDITLDNGQVLTGDNTAEFMLNGIYKAFDPDTQDMYFEYV ASAVMDGAFSNMTMDKMMQIAQAMGSLSEGRHFYAYTFHEDEAEYFQGAGFAKNAPDS ETDPEVGIYMNEQNASKLGWYLQRFQYGHPYRLQ" gene 3505..3891 /locus_tag="OU28_RS10395" CDS 3505..3891 /locus_tag="OU28_RS10395" /inference="COORDINATES: ab initio prediction:GeneMarkS-2+" /note="Derived by automated computational analysis using gene prediction method: GeneMarkS-2+." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_238556960.1" /translation="MTFSITNTLTSDEMAGATTYILGGAQPGVDGIVAPAGTSAQRML FYAPAGGSITNLTASGDVRDQENKTMDGKNLITNVAYIAPGETVTFDFDVTTSAKAES DLRLDQTPAGWLDENVTYDTSACSIK" gene complement(3903..5612) /locus_tag="OU28_RS08325" CDS complement(3903..5612) /locus_tag="OU28_RS08325" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_006292933.1" /GO_function="GO:0022857 - transmembrane transporter activity [Evidence IEA]" /GO_process="GO:0055085 - transmembrane transport [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="MDR family MFS transporter" /protein_id="WP_033510307.1" /translation="MSGIIKRDLSKPLTPEESFANGHLTHAAMVSIAILTFITFCGNF TQLQLSAALPTIVAEFGISVTTGQWLTSIFQLVMGVMVPLTAYLTRRFSTRQIVITSM SIFTIGSLMAWVSPTFILVLLGRMLEAIGTGVMWPVLQITVFSIYPLSRRGMAMGMVG MAMSVAPAIGPTFGGWQTDANGWRSIFLTLTAIGAFALVLATFWLHNFGATDKTVKAD FFSVFLSVFGFGGLMFGFTNIESYPFAHPLVWLPMVVGMVGIVWFILRQLGNKRAWVE AQGRNESDASQSDVSQSQTATANAVGIADTADAADAHEGLLHGHLRFHRWHRTTGREP LLDLEVLKNRSFTVGTITAALSFFAFSSITVILPLYIQDDRGFSATMSGLIMLPGALG QAIAQFFGGKALDRFGARPVALIGTITLCFGTVMMSLISLDSWIWWVSIWQFVRQIGM GFVLMPITTWSLNCLSPKEVSAGSAVTNTVRQIAGAIGAPVLVILMETFAAMRQTALG GGADVAIAASVFGVQWALRVSAVICFGMVLMVFFGVKGNGAGSTHDLVQRALRRMHEV IEH" gene complement(5793..6800) /locus_tag="OU28_RS08330" CDS complement(5793..6800) /locus_tag="OU28_RS08330" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_003844653.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="G5 domain-containing protein" /protein_id="WP_033510309.1" /translation="MANHRKKTSISLPSLNKRQWIRIGAVAAVLALVATGGIITRSFY ASDGHSAAQQITAFSATDPLTVSRGSARDGVRGMDGDTSYVTVKLDGQSRTVLGTDFT TVKSVLEAGNITLGPNDTVDPALDAEVSESTVITIETADSALETSEEPIAFNTVRKET SSLPKGTEQVETEGEEGVMETTSLVTRAGDTVISSNVFASYVKKAPVDKVILVGTGSA SSSSSSSSSASIGTTVPAGEMQQWAHDYLLANGYSEADFSATVYIINHESGWRVNATN ASSGAYGLPQALPGSKMASAGADWATNYQTQLKWFWGYCNSRYGSVQGAYNFWVANHW Y" gene complement(6915..7274) /gene="trxA" /locus_tag="OU28_RS08335" CDS complement(6915..7274) /gene="trxA" /locus_tag="OU28_RS08335" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_014485832.1" /GO_component="GO:0005737 - cytoplasm [Evidence IEA]" /GO_function="GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="thioredoxin" /protein_id="WP_033510310.1" /translation="MATHAVSSAEFEQVITGNELVFVDFWATWCGPCRAFGPVYEQAS EKHPDVYFAKVDIDQNQDLASAAGVQAVPTLMIVKQGTVVFQQAGALRASDLEDLIAQ AKALDLKAAQAEADAQQ" gene 7440..8063 /locus_tag="OU28_RS08340" CDS 7440..8063 /locus_tag="OU28_RS08340" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_013363143.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DUF4916 domain-containing protein" /protein_id="WP_033510312.1" /translation="MPVLNDEVPDEGDFDAGRRRGEFDDITPEDFIRGSAGGNPPGWL DAARVGQVRRQVPMVYVEVVPVHTDEFGRIAEIGTLLRVSDDGSVERTLVAGRVLYHE SLREAIARNVAKDLGPLALPTLPPNLQPFTVAEFFPTPGLSEFYDARQHAVALCYVVP IAGDCQPQDEALDVEWVDVNGPRLATMLDQMAGGHGRIVQRALAWTE" gene 8098..8949 /locus_tag="OU28_RS08345" CDS 8098..8949 /locus_tag="OU28_RS08345" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_003835427.1" /GO_function="GO:0016787 - hydrolase activity [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="alpha/beta fold hydrolase" /protein_id="WP_033510313.1" /translation="MELNTTIYRDGEGIPVVLVHAFPIDHHLWDDCAAELIVRANAAG LPRFPIWAPDMPGAGEGPIPTAEQTGAIAQDGAYTEALDRMADAYVDLIRKAGFTKAI WVGLSMGGYLVLDIQRLHPEAVAGLALCDTKADADSAASRANRLRIADICETEHTVDP VMHFAEPQPGDSTIKRAPRFIRQFTGWIQAQRPEGVAWRERMAAGRPDLNDQLPLITA PAAVICGENDPSSAPSVMRPIAEAMTGTNAVFTEIPDCGHFSAYEHPDQVADALLDLV RRVQAGA" gene 8951..10042 /gene="nudC" /locus_tag="OU28_RS08350" CDS 8951..10042 /gene="nudC" /locus_tag="OU28_RS08350" /EC_number="3.6.1.22" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_015449950.1" /GO_function="GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000210 - NAD+ diphosphatase activity [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="NAD(+) diphosphatase" /protein_id="WP_033510315.1" /translation="MALLSPLALTQTLPFLPLAQGDIDYQTERRDEPGLIPSLLDDPS TTVILVRDGLVAVPRGQGVLAARESVSMRLASLPGSYAAEALAGAPEAVAMFLGGYPG RRNAHIVAIDLTRVPMGAPSVVPDAHGIGADDAFGNAAQPNTANGRVPLFARTAERFD WVDLRGFVPHASAREAGQATTAVALSLWHVTQRHCPTCGAPVQTAMAGWAQRCTNPQD GQRLLFPRVEPAVIVAVVDSRDRLLLQHNRAWNDPTLYSVSAGFVEAGENLEHACRRE TKEEVGIDLGEVRYLGSQPWPFPASLMVAFKAYALNTDIRTDGQETVDARWVSRDEYT AELVRGVMSAPNRAAIARYMIEEWYGRAL" gene 10102..11679 /locus_tag="OU28_RS08355" CDS 10102..11679 /locus_tag="OU28_RS08355" /inference="COORDINATES: protein motif:HMM:NF015679.4" /GO_function="GO:0016740 - transferase activity [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="L,D-transpeptidase family protein" /protein_id="WP_033510316.1" /translation="MSDDYQMDGFSQMDDDRTVAMPPVGDASPMTMGEDAIALSCDEE KPRNTKLPWIITLSVIGALLVLAVAGLFTARWYFSDKAAPGVTLGQISVAGQNRDRLT DTVTRAIADSTLTVADPDGQEIKASLEELGVSVDVDATVDALLNAKTDGDATGVRALL SDFARLNPFSKADIGLSAEYDEYTANTFLTDRFVADDQQAVPSSIAYDAGSQAFTVTE GKVGRAPQLDAVNKAVANAIKAPGTGASVKIDYSDVDMPIGVDAANQAAADANQRLNN KIVLTNERDRNFELSNDTVASWVKPTGDVQNGTLTLSYDEQAIKDYLAAELPKQLNQE KTDQTDIIDDNGNVLLTRVDGVDGVAVKNTDTTAAKVLEALEAGNGGLITAEFDVTPF ETKQEKATMRIVVDKSSQTATVYNNNQLVRTFPVCTGTFYIYLKYAVQDMRGYNEDGS KYLSPGVKWVGYFNGGEGFHTADWNYYGIQVGDPAHYGSHGCVNMYEADAKWIYDNCP EGTIVQVVGSTPSGPVR" gene 11733..12134 /gene="gcvH" /locus_tag="OU28_RS08360" CDS 11733..12134 /gene="gcvH" /locus_tag="OU28_RS08360" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_008783171.1" /GO_function="GO:0003824 - catalytic activity [Evidence IEA]" /GO_process="GO:0019464 - glycine decarboxylation via glycine cleavage system [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="glycine cleavage system protein GcvH" /protein_id="WP_033510327.1" /translation="MSETNETPLNLDVPEHLEYSEEHVWVDASVEPAMVGLTEYAVSQ LGELVFVDLPEPGIRVEAGDEIVELESQKAVQPLVCPVAGTVRYVNREASDDPSIITN DPYGEGWILKIELDDDEPALLTAEEYAKLVK" gene 12195..13415 /locus_tag="OU28_RS08365" CDS 12195..13415 /locus_tag="OU28_RS08365" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_013363147.1" /GO_function="GO:0008195 - phosphatidate phosphatase activity [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="App1 family protein" /protein_id="WP_152595119.1" /translation="MSDSRRTSPQVHQPTDDMPTVPIPARRVVTTFDSASKHERIEVK PPLVRLFRRAVSTMFNLWMRVSTPVVEQLGWYDQIEPYVGYGTEAYSRLICRTVYAPE HHRPGARIRGIWGMLAIPAPHRRVRVAIDGTPLETVQVGTSESYDKPDAKRRQTAEYA VSDSAGYLDLVAEHRLSPGIHRVSYRVDRRKPVTANLFTIPSGSKVGIISDVDDTIMI TQVPTLWKAAYNVLFANPKKRASVPGMSVLFTKLAALFPEAPFFYLSTSPWNVESSIR HFINDHGFPAGPLLLRDLDPRPKTFIPTGVQHKLEFAEQLMGDFPDMKFILIGDDGQK DPTTYATIARRYPGRVIAIGIRQLSPREASPLGSVAGVSATQPMPVTDVPVFTGTTGA NLMKTMLPYLERFA" gene 13548..16061 /locus_tag="OU28_RS08370" CDS 13548..16061 /locus_tag="OU28_RS08370" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_007053748.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="S9 family peptidase" /protein_id="WP_033510328.1" /translation="MERGVSSENVASMPPIARREPVARTHHGDTFLDPYAWMKDKDSA EVRDYVTAQNAYGEQRTAALGPLRDTLFNELTSRIQQTDMSVPTRMDGYWYFTRTREG SQYAVQCRLPIRGEDDWTPPRIDPLSEPGSMPSEQVVFDTNREAEGHDFFQVGGMDLS RDGRWMLYGVDTRGDERYDFRIRDLQSGTELPEVLEGIAGACITPDARWVFYTVLDDA WRPCAVRRHKVGTPVSDDVEVFREHDERFWLGVGLSFDERNIVIGTGSKTTTEVLMLP ADTPEGEFRAFIPREPDIEYDVSFARFEGAGEDGADIPLAVVYHNAFNPNFEIDVIDM RLHEPPYRLGEGVCIAQGSPYGCEQGDRVEPGASAKPIGTAYRNPANPAILQGARGLG IEGIALHRHYVALSYRADGMTHLGVMTKRDAAEDFLAGRPWRFRELLPPTLEGDWDVP DSGVAAPAGNSDSLDSDTCFTGCFTQHSPSDPSGASSPSDSADASDPSGSSADGLPDV TRRLYTIAAGGNPTYEAPRMRYTFSGYTRPGELHEFDPATGEDLLLKRARVLGDFDPR NYMERRMWITARDGERIPVSLVWRRGVALDHLPMFVTGYGAYEISSDPGFSVARLSML DRGVLYAVPHIRGGGEMGRAWYEQGRRLSKRHSFEDFVDAVAALQDAGLADPERTVAV GGSAGGLLMGAVANLAPERFAGIEADVPFVDALTSILDPSLPLTVTEWDEWGDPLHDP EVYRYMKSYTPYENAPESPDDPRVARFPKILITTSMNDTRVLVVEPLKWMARLQAAGV DVIAKIEVEAGHGGTTGRYKQWKEVSFENAWCLRTMGVA" gene 16134..17174 /locus_tag="OU28_RS08375" CDS 16134..17174 /locus_tag="OU28_RS08375" /EC_number="1.1.1.85" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_015438492.1" /GO_function="GO:0003862 - 3-isopropylmalate dehydrogenase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]" /GO_process="GO:0009098 - leucine biosynthetic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="3-isopropylmalate dehydrogenase" /protein_id="WP_033510318.1" /translation="MSETTTKYRIAVIPGDGIGKEVTPWAQKALEQAVQGAADFEYEN FDLGAERYLRDGAILPDEELERIKTTDAILLGAVGDPRIKAGILERGLLLRLRFELDQ YVNLRPSKLYKGVTSPLANPGEIDFVVVREGTEGLYCGAGGAVRRDTPAEVATEVSIN TAYGVERVVRYAFDLAMKRRKHVTLVHKKNVLVNAGDMWQRIVDRVGREYPEVSHDYC HIDAATIYMVSDPSRFDVILTDNLFGDILTDEAGAVVGGVGYSASGCINACNEFPSMF EPIHGSAPDIAGKGIANPTAAILSAAMLLRHLGFDEDAARIDAAVEADIAELGSTPRS TDEIGRDILARL" gene 17519..18940 /locus_tag="OU28_RS08380" CDS 17519..18940 /locus_tag="OU28_RS08380" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_003816535.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="lipoate--protein ligase family protein" /protein_id="WP_033510319.1" /translation="MGMRRGAVKTPGGKLVAVTVQTDQSGLPVACRLDGDFFIDGDGA PLLLDDLERTLLACAREVSAGKTDVMDGSALPTPAAREHADVQGRAARPEAHDDGVRT DAVVDAVDIVNWRDRLLQACAQHDGVRLVGTGAEAMARALSRAMGIGDESAASAVGLN GTVNDAVTKTGMSAGPQLADVPPNDMVADAVAETGPLAGAASYGLCGHRPAPHAGWPS DWLDRWRRLAPVVIHDVPRSPVEQMAIDEQWAREVAAGERPASLRFWEWSSPAVVVGR FQSIPDEVHVDEAERLGFTVVRRCTGGGTMVVQPGGAITYSLYAPRWFVDGLDAAEAY RLCDSWLIDALRGLGVDARFQGLNDIAVADDACRDTVGGQEPAQWGKAGGAAQRRFPA PPDSDGPGAVLHHTTLAYELDGALMARLLNTSPEKLSDKAVRSASKRVAPLGMQPPLQ GMGRDGLIRALSRSLGQFLSTNS" gene 19193..19906 /locus_tag="OU28_RS08385" CDS 19193..19906 /locus_tag="OU28_RS08385" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_004110206.1" /GO_function="GO:0030552 - cAMP binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]" /GO_process="GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="Crp/Fnr family transcriptional regulator" /protein_id="WP_033510320.1" /translation="MATPNAIPNDENTLLHTALFKQVSPEQAEELLPTLRESVYDKGE HIFTQGDTDHRMGLLEKGRVKLTRESNDGRVQLLSIHARGEVLGEIPVFDPTGGPRTA SAVAMVNGTRVVWLEHDALFAWLDRYPRVAVDMLQVLANRMRSNNERITDLVFMDVPA RLAKTLLDLASRFGEPVEAGLKVPHDLTQEELAQLVGSSRETVNKALMDFSNRGWIAR EGRSIVIYQPGMLIRRSRR" gene 20165..22402 /locus_tag="OU28_RS08390" CDS 20165..22402 /locus_tag="OU28_RS08390" /EC_number="2.4.-.-" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_016636461.1" /GO_function="GO:0016757 - glycosyltransferase activity [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="transglycosylase domain-containing protein" /protein_id="WP_152595120.1" /translation="MPKKKSMTIRRALSLVLAYIVLCVTGGVVASLLFVPAVFGANTV AKAVIPSLQVEGIDFDVTSLPQQSRMYASDGSLIATFYSQNRVVVPIKDVSEYMQKAI VAREDRRFFEHSGVDVQGVMRAFIQTYVLKRDMQGGSSLTQQYVKNVLMVQAREDNDP IAEYHAQESTIARKLREMLIAVQMEKMYSKPEILQGYLNIAQFGSNNLYGVETAAQRY FNVHAKDLNLVQSATIAAITKNPAGLDPSIPENQEDSENERNIVLKLMLDQGLIEQAE YDEAVNIPLVDTLNIQSVNQGCQSAGNAAFFCSYVTTKILNSEEFGETEADRQKLLNE GGLDIYTTMDVNANNAAMQAANDTIPASDSSGLEVMIAAIKPGTGEVLGFGINRTYDA TDAAASDQTKTSMNYMVDQADGGGWGVQVGSTWKPINMVAWMQQGRSINESLRTSTSY PLSNFNCGNYTFANTNWKVENSGGGTVNPETPLQGLIRSHNTTQASMASQIGLCAIAD AATALGYHNAPSSAMDVYSSNSFNAPMTIGAVQASPLTMANVYATLGANGVACTPIAM TRVTDKNGDEIDVPQADCHQAIDPEIAQTTAYALNQGVVTAGGEAATTQLDNGRKTFA KTGTNENTYMLTAGFVPNVVSAFVAVGDAQDPTHNTFDNKTINGVYRSEWFGMYIATP AWKQFMNMYLNAINAPIDNNYGNPAQKYLTVSRVQATTNGQNNQNNQTTQNGQQAQNQ NQGDQ" gene 22528..23853 /locus_tag="OU28_RS08395" CDS 22528..23853 /locus_tag="OU28_RS08395" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_007053744.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="NADH:flavin oxidoreductase/NADH oxidase" /protein_id="WP_033510321.1" /translation="MMQDDLTHDNFDFRGFSKENRHETELIRDEEERSSKKPAKAGKA GKNKAGKNSKDAGRERKAEKAGKAEKKAAVSAKPQGKRPLLFTPMQLRGLTVRNRVWL PPMDTYSAYAWDGKPTPFHYQHYVSRALGGFGLIIAEATAVCPEGRISPKDVGLWEDS QIEAWRWIVQGVRDAGAAMAVQLNHAGRKGSTGCFGVGHDGESVPVEEGGWQTVAPSP NAYGSYAVPRELSVDEIHTIVGQFAAAAGRAVAAGFQAVEIHAAHGYLISQFLDPLVN ERTDEYGGDLNGRMRFLVEIVDAVRAAIPQDMPLLVRISATDWAAGGWDLGQTVAASR VLKDHGVDLVDVSTGGIVPDVTIPVKPNYQVPFAAQVRAQAGVPTTAVGLITKPKQAE KILRAEQADAIEIGRAALRDPAWPMRAAHKLGLAPADLPYPDQYIRGAY" gene complement(23886..25034) /locus_tag="OU28_RS08400" CDS complement(23886..25034) /locus_tag="OU28_RS08400" /EC_number="1.3.5.2" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_003841077.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="quinone-dependent dihydroorotate dehydrogenase" /protein_id="WP_033510322.1" /translation="MTYVSESFWHDAVNKATTDLFTFGYKHIVKPNFVFNHTPDVAHD QMIEFCRVTGNIPPLMWLLREMLNYTDPVLETSVMGVDFANPFGLSAGLDKNCDMPVL MDNAGFGFETVGSTTSRPCAGNPKPWFHRLPEYDSMMVHVGLANDGSDKVIARAEQAW TKARSLQVSVSIARTNDDLAGDIDEGIEDYRISLERAAGRSAMVEINVSCPNTRAGEP FTESPENLDRLFSVLDTVDRPQPTLVKMPLNKSWEEFRDLLAVLAEHNVQGVSIANLQ KDRTGLEIPRDWEGGLSGGPTYRASNELVRRTYREFGDRFAIAGIGGVFTPEQAYAKI RSGASLVMFISSLMYRGPQQITVLKRGLASLLKRDGFEHVSEAVGVDA" gene 25232..26035 /locus_tag="OU28_RS08405" CDS 25232..26035 /locus_tag="OU28_RS08405" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_012578333.1" /GO_function="GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DeoR/GlpR family DNA-binding transcription regulator" /protein_id="WP_033506672.1" /translation="MISSQRQHLILSRLRTRGAVRITALSKELGVSAMTIRRDIAELA DKGLLKRVHGGAVTTSTLLSEPLFSVKSQMDVGLKDAIAREAVAYVAPGDVIAIGGGT TAYVFAQHLLESQQASGITILTNSIPVAELVQALESKDVEVIVTGGVITRSNSLVGPI ADKVIASLRVNTVFLGTHSVSVPRGFLMPNSLEAATDMAMMDIADRTIILTDHTKWSS TSLSLFARFDQVDTVITDDGLDPDSVAKTRDLVKELVLAHQSEPTEESE" gene 26041..27291 /gene="galT" /locus_tag="OU28_RS08410" CDS 26041..27291 /gene="galT" /locus_tag="OU28_RS08410" /EC_number="2.7.7.12" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_007053742.1" /GO_function="GO:0008108 - UDP-glucose:hexose-1-phosphate uridylyltransferase activity [Evidence IEA]" /GO_process="GO:0006012 - galactose metabolic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="galactose-1-phosphate uridylyltransferase" /protein_id="WP_033510330.1" /translation="MSEYANYTPGPYAAENIRITPTTLADGRDFFYLDDDPEYVSGAK TRELNDPRQLAYRFANQLNAAGEEVPYAAPEMRRDPLTGDWIPMATARMNRPITAGPG ATAKGNPLAARKPGDPYQDGEVPDTDYNVVVFENRFPSMVRVPGRSDAVEYVDGNPLW EKKMAAGRCEVICFDPDEDGLPANLPVKRLRTVVEAWAFRTAEISTMEGIEQIFPFEN HGQEIGVSLAHPHGQVYCYPFIAPKMEAELQHTEAYFEKTGGNLLKDIMNAEIEAEER IVLRNHSWVAYVPAAARWPLEVHVAPVRDVLTLDQLDDQERWDLAEMYSALLKRGNAF FDKGDGLGMDLPYIAAWHQAPIHDARREHYRLNLQFFSFRRAANKIKYLAGSESGMAA WISDTTPELIAQRFHELGPIDIAD" gene 27318..28568 /gene="galK" /locus_tag="OU28_RS08415" CDS 27318..28568 /gene="galK" /locus_tag="OU28_RS08415" /EC_number="2.7.1.6" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_008783164.1" /GO_function="GO:0004335 - galactokinase activity [Evidence IEA]" /GO_process="GO:0006012 - galactose metabolic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="galactokinase" /protein_id="WP_033510323.1" /translation="MTSVEFIEPISHDDGVARATELFRATFGEEPAGVWAAPGRVNLI GEHTDYNAGLCLPIALPHRTFLALKPREDTAVRLVSDVNPTAVAETELDGLKARGVDG WAAYPTGVAWAMREAGFDQVRGFDAAFVSCVPLGSGLSSSAAMTCSTALALDDVYGLG YGATDEGRVTLITMAIKSENDMAGASTGGLDQNASMRCTAGHAIRLDCMPGLSAVDSV SQQEFDLDKYGLELLVVDTQAHHQLNDGQYEQRRRTCEQAAELLGYEHLRAVAEAVAY STDPEGSLAAVLNCLNDETMKKRVRHVITEIGRVDEFVKAFAAGDIAESGRLFNASHD SLRDDYEVTVPELDVAVDVARANGAYGARMTGGGFGGSIIALVDKGRSQEVAQLIADE FEARGFHAPRALAAVASASASREA" gene 28908..29210 /locus_tag="OU28_RS08420" CDS 28908..29210 /locus_tag="OU28_RS08420" /inference="COORDINATES: protein motif:HMM:NF016136.4" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="type II toxin-antitoxin system RelB/DinJ family antitoxin" /protein_id="WP_033510324.1" /translation="MAMVTARVDAERKREAEMVLKRHGLTYSDVIRDLTNYLADTGEL PEFEQITLDLVRRREMERKLAIIEMFANAELPAVEGDWSDEEIVEQERLRKAGEPW" gene 29204..>29553 /locus_tag="OU28_RS08425" CDS 29204..>29553 /locus_tag="OU28_RS08425" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_012578130.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="PIN domain-containing protein" /protein_id="WP_033510325.1" /translation="MVRLLFDTNILLDLCNVNRVPFHQDALDLLTRCVRRGDVEMMVC VASLNDVYYVLRRHYGSERQARQYVGKLMELFDVRPLLPRHARRSLASDEPDFEDGLI RAVAECSCTVKKQAT" CONTIG join(JDTM01000020.1:1..29553) //
Whole sequence (abbreviated view) Selected region from: to:
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