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NCBI Reference Sequence: NZ_JBDZYM010000002.1
FASTA Graphics
LOCUS NZ_JBDZYM010000002 28867 bp DNA linear CON 06-JUN-2024 DEFINITION Enterobacter dykesii strain 3A Contig_2, whole genome shotgun sequence. ACCESSION NZ_JBDZYM010000002 NZ_JBDZYM010000000 VERSION NZ_JBDZYM010000002.1 DBLINK BioProject: PRJNA224116 BioSample: SAMN41553692 Assembly: GCF_040064095.1 KEYWORDS WGS; RefSeq. SOURCE Enterobacter dykesii ORGANISM Enterobacter dykesii Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Enterobacter. REFERENCE 1 (bases 1 to 28867) AUTHORS Rahman,F., Das,S. and Sanyal,S.K. TITLE Direct Submission JOURNAL Submitted (27-MAY-2024) Department of Microbiology, Jagannath University, 9-10 Chittaranjan Avenue, Dhaka 1100, Bangladesh COMMENT REFSEQ INFORMATION: The reference sequence is identical to JBDZYM010000002.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: SPAdes v. 3.15.5 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 35x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_040064095.1-RS_2024_06_05 Annotation Date :: 06/05/2024 17:09:58 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,402 CDSs (total) :: 4,326 Genes (coding) :: 4,270 CDSs (with protein) :: 4,270 Genes (RNA) :: 76 rRNAs :: 1, 1 (16S, 23S) complete rRNAs :: 1 (23S) partial rRNAs :: 1 (16S) tRNAs :: 68 ncRNAs :: 6 Pseudo Genes (total) :: 56 CDSs (without protein) :: 56 Pseudo Genes (ambiguous residues) :: 0 of 56 Pseudo Genes (frameshifted) :: 27 of 56 Pseudo Genes (incomplete) :: 34 of 56 Pseudo Genes (internal stop) :: 12 of 56 Pseudo Genes (multiple problems) :: 14 of 56 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..28867 /organism="Enterobacter dykesii" /mol_type="genomic DNA" /submitter_seqid="Contig_2" /strain="3A" /isolation_source="Plant Root Soil" /db_xref="taxon:2797506" /geo_loc_name="Bangladesh: Tangail" /collection_date="2021-11-21" /collected_by="Subrata Das" gene 275..658 /gene="secE" /locus_tag="ABLO17_RS01160" /old_locus_tag="ABLO17_01160" CDS 275..658 /gene="secE" /locus_tag="ABLO17_RS01160" /old_locus_tag="ABLO17_01160" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_007665874.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="preprotein translocase subunit SecE" /protein_id="WP_014068449.1" /translation="MSANTEAQGSGRGLEAMKWVAVAVLLIVAIVGNYLYRDMMLPLR ALAVVILIAAAGGVALLTTKGKATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTA VMSLILWGLDGILVRLVSFITGLRF" gene 660..1205 /gene="nusG" /locus_tag="ABLO17_RS01165" /old_locus_tag="ABLO17_01165" CDS 660..1205 /gene="nusG" /locus_tag="ABLO17_RS01165" /old_locus_tag="ABLO17_01165" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_005280494.1" /GO_process="GO:0006353 - DNA-templated transcription termination [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="transcription termination/antitermination protein NusG" /protein_id="WP_002438628.1" /translation="MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEELFGEVMV PTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAP ISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVSDGPFADFNGVVEEVDYEKSRLKV SVSIFGRATPVELDFAQVEKA" gene 1362..1790 /gene="rplK" /locus_tag="ABLO17_RS01170" /old_locus_tag="ABLO17_01170" CDS 1362..1790 /gene="rplK" /locus_tag="ABLO17_RS01170" /old_locus_tag="ABLO17_01170" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_006121495.1" /GO_component="GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000315 - organellar large ribosomal subunit [Evidence IEA]" /GO_function="GO:0003735 - structural constituent of ribosome [Evidence IEA]" /GO_process="GO:0006412 - translation [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="50S ribosomal protein L11" /protein_id="WP_008503452.1" /translation="MAKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNA KTESLEKGLPIPVVITVYADRSFTFVTKTPPAAVLLKKAAGIKSGSGKPNKDKVGKIS RAQLQEIAQTKAADMTGADIEAMTRSIEGTARSMGLVVED" gene 1794..2498 /gene="rplA" /locus_tag="ABLO17_RS01175" /old_locus_tag="ABLO17_01175" CDS 1794..2498 /gene="rplA" /locus_tag="ABLO17_RS01175" /old_locus_tag="ABLO17_01175" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_312934.1" /GO_component="GO:0015934 - large ribosomal subunit [Evidence IEA]" /GO_function="GO:0003723 - RNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]" /GO_process="GO:0006412 - translation [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="50S ribosomal protein L1" /protein_id="WP_006810530.1" /translation="MAKLTKRMSVIRDKVDATKQYDINEAIALLKELATAKFVESVDV AVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFAQGANAEAAKAAGAELVGMEDLAD QIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQ VRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPTQAKGVYIKKVSISTTM GAGVAVDQAGLSAAAN" gene 2790..3287 /gene="rplJ" /locus_tag="ABLO17_RS01180" /old_locus_tag="ABLO17_01180" CDS 2790..3287 /gene="rplJ" /locus_tag="ABLO17_RS01180" /old_locus_tag="ABLO17_01180" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002438625.1" /GO_component="GO:0015934 - large ribosomal subunit [Evidence IEA]" /GO_function="GO:0003735 - structural constituent of ribosome [Evidence IEA]" /GO_process="GO:0006412 - translation [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="50S ribosomal protein L10" /protein_id="WP_003862338.1" /translation="MALNLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKA GREAGVYMRVVRNTLLRRVVEGTQFECLKDTFVGPTLIAYSMEHPGAAARLFKEFAKA NAKFEVKAAAFEGELIPASQIDRLATLPTYEEAIARLMATMKEAAAGKLVRTLAAVRD AKEAA" gene 3354..3719 /gene="rplL" /locus_tag="ABLO17_RS01185" /old_locus_tag="ABLO17_01185" CDS 3354..3719 /gene="rplL" /locus_tag="ABLO17_RS01185" /old_locus_tag="ABLO17_01185" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_005122872.1" /GO_component="GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000315 - organellar large ribosomal subunit [Evidence IEA]" /GO_function="GO:0003735 - structural constituent of ribosome [Evidence IEA]" /GO_process="GO:0006412 - translation [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="50S ribosomal protein L7/L12" /protein_id="WP_002445276.1" /translation="MSITKDQIIEAVAAMSVMDVVELVSAMEEKFGVSAAAAVAVAAG PAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKD DAEALKKSLEEAGAEVEVK" gene 4039..8067 /gene="rpoB" /locus_tag="ABLO17_RS01190" /old_locus_tag="ABLO17_01190" CDS 4039..8067 /gene="rpoB" /locus_tag="ABLO17_RS01190" /old_locus_tag="ABLO17_01190" /EC_number="2.7.7.6" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_004870488.1" /GO_function="GO:0003677 - DNA binding [Evidence IEA]; GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]" /GO_process="GO:0006351 - DNA-templated transcription [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DNA-directed RNA polymerase subunit beta" /protein_id="WP_023334099.1" /translation="MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPE GQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRL VIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSD KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALQYTTE QILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEADGKVYVEKGRRITARHIRQ LEKDDIKLIEVPVEYIAGKVAAKDYVDESTGELICPANMELSLDLLAKLSQSGHKRIE TLFTNDLDHGAYISETIRVDPTTDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSE DRYDLSAVGRMKFNRSLLRDEIEGSGILSKDDIIEVMKKLIDIRNGKGEVDDIDHLGN RRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGS SQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEG PNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLD DEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMG ANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGTVQYVDASRIVIKVNEDE MYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQ NMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPN VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVK DSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLF SRIYAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLE AKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKINPIEDMPHD ANGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQEEVAKLREFIQ RAYDLGTDVRQKVDLNTFSDEEVLRLAENLKKGMPIATPVFDGAKEAEIKELLQLGGL PTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGK AQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP ESFNVLLKEIRSLGINIELEDE" gene 8144..12367 /gene="rpoC" /locus_tag="ABLO17_RS01195" /old_locus_tag="ABLO17_01195" CDS 8144..12367 /gene="rpoC" /locus_tag="ABLO17_RS01195" /old_locus_tag="ABLO17_01195" /EC_number="2.7.7.6" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_463023.1" /GO_function="GO:0003677 - DNA binding [Evidence IEA]; GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]" /GO_process="GO:0006351 - DNA-templated transcription [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DNA-directed RNA polymerase subunit beta'" /protein_id="WP_029741888.1" /translation="MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETI NYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERM GHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERHQIL TEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLT KRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRN NRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGK QGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLAT TIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLH PLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVL GLYYMTRDCVNAKGEGMVLTGPKEAERIYRAGLASLHARVKVRITEYEKDENGEFVAK TSLKDTTVGRAILWMIVPKGLPFSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQT MYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKV IDIWAAANDRVSKAMMDNLQTETVINRDGVEEQQVSFNSIYMMADSGARGSAAQIRQL AGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTR RLVDVAQDLVVTEDDCGTLEGITMTPVIEGGDVKEPLRDRVLGRVTAEDILKPGTADI LVPRNTLLHEHWCDLLEANSVDSVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEA IGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNAKSVVNSAGK LVVTSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGEQVAGGETVANWDPHTMPVITE VSGFIRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTTGGKDLRPALKIVDAQGNDV LIPGTDMPAQYFLPGKAIVQLEDGIQIGAGDALARIPQESSGTKDITGGLPRVADLFE ARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSEPYEEMIPKWRQLNVFEGERV ERGDVVSDGPEAPHDILRLRGVHAVTRYITNEVQDVYRLQGVKINDKHIEVIVRQMLR KATIENAGSSEFLEGEQVEYSRVKIANRDLEANGKIGATFSRDLLGITKASLATESFI SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEL PAAPQVTAEDASASLAELLNAGLGGSDNE" gene complement(12427..12744) /locus_tag="ABLO17_RS01200" /old_locus_tag="ABLO17_01200" CDS complement(12427..12744) /locus_tag="ABLO17_RS01200" /old_locus_tag="ABLO17_01200" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_006176750.1" /GO_function="GO:0016740 - transferase activity [Evidence IEA]" /GO_process="GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="PTS lactose/cellobiose transporter subunit IIA" /protein_id="WP_008503455.1" /translation="MEDLETTIMELLVNAGAARSAALTALQMARKGEFDEAEKAMEES REYVKHAHTIQTQLIGLDEGTGKLPVNLITVHSQDHLMNAMVIQDLAGDMIELYRRIP LVN" gene complement(12744..13052) /locus_tag="ABLO17_RS01205" /old_locus_tag="ABLO17_01205" CDS complement(12744..13052) /locus_tag="ABLO17_RS01205" /old_locus_tag="ABLO17_01205" /EC_number="2.7.1.-" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_008503456.1" /GO_function="GO:0008982 - protein-N(PI)-phosphohistidine-sugar phosphotransferase activity [Evidence IEA]" /GO_process="GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="PTS sugar transporter subunit IIB" /protein_id="WP_010425948.1" /translation="MKNIVLCCAAGMSTSMLVQRMKDAAQKKGVEVTIKAVPVAEFKD NIATADIVLLGPQVKYEQAKLQAQADPLGKKVAVIDMMDYGMMKGDAVLEKALKLLES " gene complement(13234..14775) /locus_tag="ABLO17_RS01210" /old_locus_tag="ABLO17_01210" CDS complement(13234..14775) /locus_tag="ABLO17_RS01210" /old_locus_tag="ABLO17_01210" /EC_number="2.7.7.65" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_008503457.1" /GO_function="GO:0052621 - diguanylate cyclase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="sensor domain-containing diguanylate cyclase" /protein_id="WP_348939971.1" /translation="MALHSKKLSFTRPIMLSFAGILCSFAVIAIAVTLSQRKDFLEDY HKINSNFTHNLAVNYTESILRENDYILGRAAMYFSRNDRLNETLNVNPTQGLQMMMHL QNLMPTVSSISLADTQGHYLRVPEVLPTEKSKTFDPRTRPWFVAQAEASIFSHYTRPY MDYFTGHPTVTLYKPLISPEGRLKGTIAFHLDLTSMGYTLRQMVAPVQGEFFVVERDG AVVLHPDTGALFKQYVSEALMDKMTSGEGHLYDKKSNVWYYYYSFTNPDWFVIYRVSG ETLTDITRHETTIVGWGFALAAIIIILFGLYLRHASRSVLMHIINAIKTGDVSEAPRL EAMLSHTIQSNKEREMAYVRQATHDALTGCKNRRAFDSDIAELLNAQQPFALALVDID NFKSINDTLGHLTGDIVLRNVAREGIQIMQPHDVSIYRYGGEEFAVIFQAEQMTSALS LLEAWRTAVEKRVWREENLRVTFSGGLGEWHFEPLEQLVGSVDNALYSAKQQGKNRIN RTSIS" gene complement(15113..16240) /gene="thiH" /locus_tag="ABLO17_RS01215" /old_locus_tag="ABLO17_01215" CDS complement(15113..16240) /gene="thiH" /locus_tag="ABLO17_RS01215" /old_locus_tag="ABLO17_01215" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_014882069.1" /GO_function="GO:0016829 - lyase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]" /GO_process="GO:0009228 - thiamine biosynthetic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="2-iminoacetate synthase ThiH" /protein_id="WP_348939972.1" /translation="MSTFTDRWQQLNWDDIALRINSKTAADVERALNARHLTREDLMA LLSPAASAYLEPMAQRAQRLTRQRFGNTVSFYVPLYLSNLCANDCTYCGFSMSNRIRR KTLDEGEIARECAAIREMGFEHLLLVTGEHQGKVGMGYFRQHLPAIRRQFASLQMEVQ PLSQEEYAELKTLGLDGVMVYQETYHETTYARHHLKGKKQDFFFRLETPDRLGRAGID KIGLGALIGLSDSWRVDCYMVAEHLLWLQQHYWQSRYSISFPRLRPCAGGIEPASLMD ERQLVQTICAFRLLAPEVELSLSTRESPAFRDRVIPLAINNVSAFSKTQPGGYADDRP ELEQFVPHDGRRPEAVAAALMAQGLQPVWKDWDSWLGRASQ" gene complement(16237..17007) /gene="thiG" /locus_tag="ABLO17_RS01220" /old_locus_tag="ABLO17_01220" CDS complement(16237..17007) /gene="thiG" /locus_tag="ABLO17_RS01220" /old_locus_tag="ABLO17_01220" /EC_number="2.8.1.10" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_418418.2" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="thiazole synthase" /protein_id="WP_348939973.1" /translation="MLRIADKVFDSHLFTGTGKFASPQLMVDAIRESGSQLVTLALKR VDLRHHSDAILAPLLEAGVTLLPNTSGAKTAEEAVFAAQLAREALGTRWLKLEIHPDA RWLLPDPIETLKAAEKLVQQGFIVLPYCGADPVLCKRLEEVGCAAVMPLGAPIGSNQG LETRAMLEIIIEQATVPVVVDAGIGVPSHAAQAMEMGADAVLVNTAIAVADDPVMMAR AFRMAVEAGLLARESGPGSRSFQAQATSPLTGFLEAIS" gene complement(17009..17209) /gene="thiS" /locus_tag="ABLO17_RS01225" /old_locus_tag="ABLO17_01225" CDS complement(17009..17209) /gene="thiS" /locus_tag="ABLO17_RS01225" /old_locus_tag="ABLO17_01225" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_005132879.1" /GO_function="GO:0003824 - catalytic activity [Evidence IEA]" /GO_process="GO:0009228 - thiamine biosynthetic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="sulfur carrier protein ThiS" /protein_id="WP_348939974.1" /translation="MRILFNDEPMRCDGGLTVAALLDKLRQLKPGTALALNQQILPRE QWEHQQVNEGDQILLFQVIAGG" gene complement(17193..17948) /locus_tag="ABLO17_RS01230" /old_locus_tag="ABLO17_01230" CDS complement(17193..17948) /locus_tag="ABLO17_RS01230" /old_locus_tag="ABLO17_01230" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_013095010.1" /GO_function="GO:0008641 - ubiquitin-like modifier activating enzyme activity [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="HesA/MoeB/ThiF family protein" /protein_id="WP_348939975.1" /translation="MNDRDFMRYSRQILLEDIAIDGQQKLLASRVLIVGLGGLGAPAA LYLAGAGVGTLVLADDDEVHLSNLQRQILFTTDDINQPKAQITRQRLNQLNPDIALIA LQERLSGESLRREVALADVVLDCTDNMATRQAINAACVANNKPLITASAVGFGGQMMV LTPPWTQGCYRCLWPDDAEPTRNCRTAGILGPVVGVMGTMQALEAIKLLSGMETERNT LRLFDARSSGWRQLALRRASRCPVCGGRDAHSV" gene complement(17935..18576) /gene="thiE" /locus_tag="ABLO17_RS01235" /old_locus_tag="ABLO17_01235" CDS complement(17935..18576) /gene="thiE" /locus_tag="ABLO17_RS01235" /old_locus_tag="ABLO17_01235" /EC_number="2.5.1.3" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_015569969.1" /GO_function="GO:0004789 - thiamine-phosphate diphosphorylase activity [Evidence IEA]" /GO_process="GO:0009228 - thiamine biosynthetic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="thiamine phosphate synthase" /protein_id="WP_348939976.1" /translation="MYQPDFPPVPYRLGLYPVVDSVAWIERLLEAGVRTIQLRIKDKR DEEVEADVVAAIALGRRYNARLFINDYWRLAVKHRAYGVHLGQEDLETTDLSAIREAG LRLGVSTHDDMEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLTQLASHVKRLADYP TVAIGGISLERAPAVLETGVGSIAVVSAITQAADWRSATEQLLQLAGAGDERS" gene complement(18576..20471) /gene="thiC" /locus_tag="ABLO17_RS01240" /old_locus_tag="ABLO17_01240" CDS complement(18576..20471) /gene="thiC" /locus_tag="ABLO17_RS01240" /old_locus_tag="ABLO17_01240" /EC_number="4.1.99.17" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_463033.1" /GO_function="GO:0051536 - iron-sulfur cluster binding [Evidence IEA]" /GO_process="GO:0009228 - thiamine biosynthetic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="phosphomethylpyrimidine synthase ThiC" /protein_id="WP_348939977.1" /translation="MSTVKLTRREQRAQAQHFIDTLEGSAFPNSKRIYISGSQADIRV PMREIQLSPTLIGGSKDNPQYEDNEAVPVYDTSGPYGDPSVTINVQQGLAKLRQPWID ARNDCEELSVRSSAYTKERLADDGLDELRFTGLLTPKRAKAGKCVTQLHYARRGIVTP EMEFIAIRENMGRERIRSEVLRYQHPGEGFGARLPENITPEFVRDEVAAGRAIIPANI NHPESEPMIIGRNFLVKVNANIGNSAVTSSIEEEVEKLVWSTRWGADTVMDLSTGRYI HETREWILRNSPVPIGTVPIYQALEKVNGIAEDLTWEAFRDTLLEQAEQGVDYFTIHA GVLLRYVPMTAKRLTGIVSRGGSIMAKWCLSHHRENFLYEHFREICEICAAYDVSLSL GDGLRPGSIRDANDEAQFAELHTLGELTKIAWEYDVQVMIEGPGHVPMQMIRRNMTEE LEHCHEAPFYTLGPLTTDIAPGYDHFTSGIGAAMIGWFGCAMLCYVTPKEHLGLPNKE DVKQGLITYKIAAHAADLAKGHPGAQIRDNAMSKARFEFRWEDQFNLALDPFTARAYH DETLPQESGKVAHFCSMCGPKFCSMKISQEVRDYAAAQTIEVGMADMSETFRARGGEI YLKKEEA" regulatory complement(20550..20661) /regulatory_class="riboswitch" /inference="COORDINATES: nucleotide motif:Rfam:14.4:RF00059" /inference="COORDINATES: profile:INFERNAL:1.1.5" /note="TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch." /bound_moiety="thiamine pyrophosphate" /db_xref="RFAM:RF00059" gene complement(20716..21213) /locus_tag="ABLO17_RS01245" /old_locus_tag="ABLO17_01245" CDS complement(20716..21213) /locus_tag="ABLO17_RS01245" /old_locus_tag="ABLO17_01245" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_014882075.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="Rsd/AlgQ family anti-sigma factor" /protein_id="WP_032662962.1" /translation="MLNQLQSLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKE SFMRLNEKALDDFCQGLVDYLSDGHFNIYERIIREMEGTTPYLAASKLYPLLEANTQQ IMDYYDSALENAIDHDNYLEFQQALSDLGEALEERFTLEDKLIALVLDNDLNISNEEN VARPA" gene 21309..22082 /gene="nudC" /locus_tag="ABLO17_RS01250" /old_locus_tag="ABLO17_01250" CDS 21309..22082 /gene="nudC" /locus_tag="ABLO17_RS01250" /old_locus_tag="ABLO17_01250" /EC_number="3.6.1.22" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_312946.1" /GO_function="GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000210 - NAD+ diphosphatase activity [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="NAD(+) diphosphatase" /protein_id="WP_126331237.1" /translation="MDRIIEKSDLGWWIVSHEQKLWLPAGEIPYGAAEAFDLVGQPAL QIGEWQGEPVWLIQQPRRQDMGSVRQVLDLDVGLFQLAGRGVQLAEFYRSHKYCGYCG HTMRPSKTEWAMLCSHCRERYYPQIAPCIIVAIRREDSILLAQHTRHRNGIYTVLAGF VEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPFPQSLMTAFMAEYDSGEIVIDQK ELLDANWYRYDDLPLLPPPGTVARRLIEDTVAMCRAEYE" gene 22121..23185 /gene="hemE" /locus_tag="ABLO17_RS01255" /old_locus_tag="ABLO17_01255" CDS 22121..23185 /gene="hemE" /locus_tag="ABLO17_RS01255" /old_locus_tag="ABLO17_01255" /EC_number="4.1.1.37" /inference="COORDINATES: similar to AA sequence:RefSeq:YP_005224516.1" /GO_function="GO:0004853 - uroporphyrinogen decarboxylase activity [Evidence IEA]" /GO_process="GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="uroporphyrinogen decarboxylase" /protein_id="WP_348939978.1" /translation="MTELKNDRYLRALLRQPVDVTPVWMMRQAGRYLPEYKATRAQAG DFMSLCKNAELACEVTLQPLRRFPLDAAILFSDILTIPDAMGLGLYFETGEGPRFTSP IKSKADVDKLPIPDPEGELGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGS SKAFTMIKKMMYAEPLALHALLDKLAKSVTLYLNAQIKAGAQSVMIFDTWGGVLTGRD YQQFSLYYMHKIVDGLLRENEGRRVPVTLFTKGGGQWLEAMAATGCDALGLDWTTDIA DARRRVGDKVALQGNMDPSMLYALPARIEEEVSTILSGFGQGEGHVFNLGHGIHQDVP PEHAGVFVEAVHRLSAQYHK" gene 23195..23866 /gene="nfi" /locus_tag="ABLO17_RS01260" /old_locus_tag="ABLO17_01260" CDS 23195..23866 /gene="nfi" /locus_tag="ABLO17_RS01260" /old_locus_tag="ABLO17_01260" /EC_number="3.1.21.7" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_463037.1" /GO_function="GO:0004519 - endonuclease activity [Evidence IEA]" /GO_process="GO:0006281 - DNA repair [Evidence IEA]" /note="cleaves DNA at apurinic or apyrimidinic sites; cleaves DNA at apurinic or apyrimidinic sites; Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="deoxyribonuclease V" /protein_id="WP_348939979.1" /translation="MDLASLRAQQIELASSVIRGDRLDKDPPQYIGGADVGFEQDGEV TRAAMVVLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEQLSQKPDLLFV DGHGISHPRRLGVASHFGLLVDVPTIGVAKKRLCGAFEPLSAEPGALAPLIHKGEQLA WVWRSKARCNPLFIATGHRVSMDSALAWVQRCMKGYRLPEPTRWADAVASSRPAFVRW QEIQR" gene 23908..24498 /locus_tag="ABLO17_RS01265" /old_locus_tag="ABLO17_01265" CDS 23908..24498 /locus_tag="ABLO17_RS01265" /old_locus_tag="ABLO17_01265" /inference="COORDINATES: similar to AA sequence:RefSeq:YP_005224518.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="YjaG family protein" /protein_id="WP_023309980.1" /translation="MLQNPIHLRLEKLESWQHVTFMACLCERMYPNYAAFCKETGFGD GHIYRRILDLIWETLTVKDAKVNFDSQLEKLEEAIPAADDFDLYGVYPAIDACVALSE LLHSRLSGETLEHAIEVSKASITTVAMLEMTQEGREMTDEELRANPAVEQEWDIQWEI FRLLAECEERDIELIKGLRADLREAGESNIGIIFNQ" gene 24685..24957 /gene="hupA" /locus_tag="ABLO17_RS01270" /old_locus_tag="ABLO17_01270" CDS 24685..24957 /gene="hupA" /locus_tag="ABLO17_RS01270" /old_locus_tag="ABLO17_01270" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_017460010.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="nucleoid-associated protein HU-alpha" /protein_id="WP_002445246.1" /translation="MNKTQLIDVIADKADLSKVQAKAALESTLAAITESLKEGDAVQL VGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK" gene 24969..25661 /locus_tag="ABLO17_RS01275" /old_locus_tag="ABLO17_01275" CDS 24969..25661 /locus_tag="ABLO17_RS01275" /old_locus_tag="ABLO17_01275" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_010425913.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DUF1481 domain-containing protein" /protein_id="WP_047651713.1" /translation="MNSFSEGAATPLLSFWRGTLALAGMLLLSACSHDTSLPPFTASG YADNQGAVRIWRKDSGDEVHLLSAFSPWHNGNTSTAEYRWQGDDLSLIELNVYSKTPE HVKVRFDDHGELSFMQREVSGQKQQLSSDQIALYRYRAEQIRQTSDALRLGRVVLRQG RWHADGTVTTCEGQTVKPELESWATEHIQRRQRHSSMEVSVAWLEAPEGSQLLLVANE DFCTWQPTEKSF" gene complement(25711..27003) /gene="purD" /locus_tag="ABLO17_RS01280" /old_locus_tag="ABLO17_01280" CDS complement(25711..27003) /gene="purD" /locus_tag="ABLO17_RS01280" /old_locus_tag="ABLO17_01280" /EC_number="6.3.4.13" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_010425912.1" /GO_function="GO:0004637 - phosphoribosylamine-glycine ligase activity [Evidence IEA]" /GO_process="GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA]; GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="phosphoribosylamine--glycine ligase" /protein_id="WP_348939980.1" /translation="MKVLVIGNGGREHALAWKAAQSPLVKTVFVAPGNAGTALEPALQ NVAIGVTDIPALLSFAQSEKIDLTIVGPEAPLVIGVVDAFRAAGLTIFGPTEGAAQLE GSKAFTKDFLARHNIPTAEYQNFTEVEPALAYLREKGAPIVIKADGLAAGKGVIVAMT LEEAEAAVQDMLAGNAFGDAGHRIVIEEFLDGEEASFIVMVDGEHVLPMATSQDHKRV GNGDTGPNTGGMGAYSPAPVVTDEVHQRTMDRVIWPTVKGMAAEGNTYTGFLYAGLMI DKQGNPKVIEFNCRFGDPETQPIMLRMKSDLVELCLAACEGKLDEKTSEWDERASLGV VIAAGGYPGNYNTGDEIHGLPLEEIEGAKVFHAGTKLAEDDRVLTNGGRVLCATALGH TVAEAQKRAYALMADIHWNGSFSRQDIGYRAIAREQGE" gene complement(27019..28608) /gene="purH" /locus_tag="ABLO17_RS01285" /old_locus_tag="ABLO17_01285" CDS complement(27019..28608) /gene="purH" /locus_tag="ABLO17_RS01285" /old_locus_tag="ABLO17_01285" /EC_number="2.1.2.3" /EC_number="3.5.4.10" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_005132841.1" /GO_function="GO:0003937 - IMP cyclohydrolase activity [Evidence IEA]; GO:0004643 - phosphoribosylaminoimidazolecarboxamide formyltransferase activity [Evidence IEA]" /GO_process="GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase" /protein_id="WP_047651710.1" /translation="MQQRRPVRRALLSVSDKAGIVEFAQALSARGVELLSTGGTARLL ADKGLPVTEVSDYTGFPEMMDGRVKTLHPKVHGGILGRRGQDDAIMEQHDIAPIDMVV VNLYPFAQTVAREGCSLEDAVENIDIGGPTMVRSAAKNHKDVAIVVKSSDYNTIINEM DANEGSLTLETRFDLAIKAFEHTAAYDSMIANYFGSLVPAYHGESKDPSGRFPRTLNL NFIKKQDMRYGENSHQQAAFYIEEEVKEASVATAQQVQGKALSYNNIADTDAALECVK EFNEPACVIVKHANPCGVAVSTSILDAYDRAYKTDPTSAFGGIIAFNRELDAETAQAI ISRQFVEVIIAPSASEEALKITAAKQNVRVLVCGQWAKRVPGLDFKRVNGGLLVQDRD LGMVTEADLRVVTKRQPSEQELRDALFCWKVAKFVKSNAIVYAKENMTIGIGAGQMSR VYSAKIAGIKAGDEGLEVKGSAMASDAFFPFRDGIDAAAAVGITCVIQPGGSIRDDEV IAAADEHGIAMIFTDMRHFRH" CONTIG join(JBDZYM010000002.1:1..28867) //
Whole sequence (abbreviated view) Selected region from: to:
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