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Enterobacter dykesii strain 3A Contig_2, whole genome shotgun sequence

NCBI Reference Sequence: NZ_JBDZYM010000002.1

FASTA Graphics 

LOCUS       NZ_JBDZYM010000002     28867 bp    DNA     linear   CON 06-JUN-2024
DEFINITION  Enterobacter dykesii strain 3A Contig_2, whole genome shotgun
            sequence.
ACCESSION   NZ_JBDZYM010000002 NZ_JBDZYM010000000
VERSION     NZ_JBDZYM010000002.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN41553692
            Assembly: GCF_040064095.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterobacter dykesii
  ORGANISM  Enterobacter dykesii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Enterobacter.
REFERENCE   1  (bases 1 to 28867)
  AUTHORS   Rahman,F., Das,S. and Sanyal,S.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-MAY-2024) Department of Microbiology, Jagannath
            University, 9-10 Chittaranjan Avenue, Dhaka 1100, Bangladesh
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBDZYM010000002.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 35x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_040064095.1-RS_2024_06_05
            Annotation Date                   :: 06/05/2024 17:09:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,402
            CDSs (total)                      :: 4,326
            Genes (coding)                    :: 4,270
            CDSs (with protein)               :: 4,270
            Genes (RNA)                       :: 76
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 68
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 56
            CDSs (without protein)            :: 56
            Pseudo Genes (ambiguous residues) :: 0 of 56
            Pseudo Genes (frameshifted)       :: 27 of 56
            Pseudo Genes (incomplete)         :: 34 of 56
            Pseudo Genes (internal stop)      :: 12 of 56
            Pseudo Genes (multiple problems)  :: 14 of 56
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28867
                     /organism="Enterobacter dykesii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="Contig_2"
                     /strain="3A"
                     /isolation_source="Plant Root Soil"
                     /db_xref="taxon:2797506"
                     /geo_loc_name="Bangladesh: Tangail"
                     /collection_date="2021-11-21"
                     /collected_by="Subrata Das"
     gene            275..658
                     /gene="secE"
                     /locus_tag="ABLO17_RS01160"
                     /old_locus_tag="ABLO17_01160"
     CDS             275..658
                     /gene="secE"
                     /locus_tag="ABLO17_RS01160"
                     /old_locus_tag="ABLO17_01160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007665874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="WP_014068449.1"
                     /translation="MSANTEAQGSGRGLEAMKWVAVAVLLIVAIVGNYLYRDMMLPLR
                     ALAVVILIAAAGGVALLTTKGKATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTA
                     VMSLILWGLDGILVRLVSFITGLRF"
     gene            660..1205
                     /gene="nusG"
                     /locus_tag="ABLO17_RS01165"
                     /old_locus_tag="ABLO17_01165"
     CDS             660..1205
                     /gene="nusG"
                     /locus_tag="ABLO17_RS01165"
                     /old_locus_tag="ABLO17_01165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005280494.1"
                     /GO_process="GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="WP_002438628.1"
                     /translation="MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEELFGEVMV
                     PTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAP
                     ISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVSDGPFADFNGVVEEVDYEKSRLKV
                     SVSIFGRATPVELDFAQVEKA"
     gene            1362..1790
                     /gene="rplK"
                     /locus_tag="ABLO17_RS01170"
                     /old_locus_tag="ABLO17_01170"
     CDS             1362..1790
                     /gene="rplK"
                     /locus_tag="ABLO17_RS01170"
                     /old_locus_tag="ABLO17_01170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006121495.1"
                     /GO_component="GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA]; GO:0000315 - organellar large
                     ribosomal subunit [Evidence IEA]"
                     /GO_function="GO:0003735 - structural constituent of
                     ribosome [Evidence IEA]"
                     /GO_process="GO:0006412 - translation [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="WP_008503452.1"
                     /translation="MAKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNA
                     KTESLEKGLPIPVVITVYADRSFTFVTKTPPAAVLLKKAAGIKSGSGKPNKDKVGKIS
                     RAQLQEIAQTKAADMTGADIEAMTRSIEGTARSMGLVVED"
     gene            1794..2498
                     /gene="rplA"
                     /locus_tag="ABLO17_RS01175"
                     /old_locus_tag="ABLO17_01175"
     CDS             1794..2498
                     /gene="rplA"
                     /locus_tag="ABLO17_RS01175"
                     /old_locus_tag="ABLO17_01175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312934.1"
                     /GO_component="GO:0015934 - large ribosomal subunit
                     [Evidence IEA]"
                     /GO_function="GO:0003723 - RNA binding [Evidence IEA];
                     GO:0003735 - structural constituent of ribosome [Evidence
                     IEA]"
                     /GO_process="GO:0006412 - translation [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="WP_006810530.1"
                     /translation="MAKLTKRMSVIRDKVDATKQYDINEAIALLKELATAKFVESVDV
                     AVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFAQGANAEAAKAAGAELVGMEDLAD
                     QIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQ
                     VRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPTQAKGVYIKKVSISTTM
                     GAGVAVDQAGLSAAAN"
     gene            2790..3287
                     /gene="rplJ"
                     /locus_tag="ABLO17_RS01180"
                     /old_locus_tag="ABLO17_01180"
     CDS             2790..3287
                     /gene="rplJ"
                     /locus_tag="ABLO17_RS01180"
                     /old_locus_tag="ABLO17_01180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002438625.1"
                     /GO_component="GO:0015934 - large ribosomal subunit
                     [Evidence IEA]"
                     /GO_function="GO:0003735 - structural constituent of
                     ribosome [Evidence IEA]"
                     /GO_process="GO:0006412 - translation [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="WP_003862338.1"
                     /translation="MALNLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKA
                     GREAGVYMRVVRNTLLRRVVEGTQFECLKDTFVGPTLIAYSMEHPGAAARLFKEFAKA
                     NAKFEVKAAAFEGELIPASQIDRLATLPTYEEAIARLMATMKEAAAGKLVRTLAAVRD
                     AKEAA"
     gene            3354..3719
                     /gene="rplL"
                     /locus_tag="ABLO17_RS01185"
                     /old_locus_tag="ABLO17_01185"
     CDS             3354..3719
                     /gene="rplL"
                     /locus_tag="ABLO17_RS01185"
                     /old_locus_tag="ABLO17_01185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005122872.1"
                     /GO_component="GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA]; GO:0000315 - organellar large
                     ribosomal subunit [Evidence IEA]"
                     /GO_function="GO:0003735 - structural constituent of
                     ribosome [Evidence IEA]"
                     /GO_process="GO:0006412 - translation [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="WP_002445276.1"
                     /translation="MSITKDQIIEAVAAMSVMDVVELVSAMEEKFGVSAAAAVAVAAG
                     PAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKD
                     DAEALKKSLEEAGAEVEVK"
     gene            4039..8067
                     /gene="rpoB"
                     /locus_tag="ABLO17_RS01190"
                     /old_locus_tag="ABLO17_01190"
     CDS             4039..8067
                     /gene="rpoB"
                     /locus_tag="ABLO17_RS01190"
                     /old_locus_tag="ABLO17_01190"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004870488.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0003899 - DNA-directed 5'-3' RNA polymerase activity
                     [Evidence IEA]"
                     /GO_process="GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="WP_023334099.1"
                     /translation="MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPE
                     GQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRL
                     VIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSD
                     KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALQYTTE
                     QILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEADGKVYVEKGRRITARHIRQ
                     LEKDDIKLIEVPVEYIAGKVAAKDYVDESTGELICPANMELSLDLLAKLSQSGHKRIE
                     TLFTNDLDHGAYISETIRVDPTTDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSE
                     DRYDLSAVGRMKFNRSLLRDEIEGSGILSKDDIIEVMKKLIDIRNGKGEVDDIDHLGN
                     RRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGS
                     SQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEG
                     PNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLD
                     DEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMG
                     ANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGTVQYVDASRIVIKVNEDE
                     MYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQ
                     NMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPN
                     VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVK
                     DSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLF
                     SRIYAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLE
                     AKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKINPIEDMPHD
                     ANGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQEEVAKLREFIQ
                     RAYDLGTDVRQKVDLNTFSDEEVLRLAENLKKGMPIATPVFDGAKEAEIKELLQLGGL
                     PTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGK
                     AQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
                     ESFNVLLKEIRSLGINIELEDE"
     gene            8144..12367
                     /gene="rpoC"
                     /locus_tag="ABLO17_RS01195"
                     /old_locus_tag="ABLO17_01195"
     CDS             8144..12367
                     /gene="rpoC"
                     /locus_tag="ABLO17_RS01195"
                     /old_locus_tag="ABLO17_01195"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463023.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0003899 - DNA-directed 5'-3' RNA polymerase activity
                     [Evidence IEA]"
                     /GO_process="GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="WP_029741888.1"
                     /translation="MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETI
                     NYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERM
                     GHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERHQIL
                     TEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLT
                     KRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRN
                     NRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGK
                     QGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLAT
                     TIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLH
                     PLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVL
                     GLYYMTRDCVNAKGEGMVLTGPKEAERIYRAGLASLHARVKVRITEYEKDENGEFVAK
                     TSLKDTTVGRAILWMIVPKGLPFSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQT
                     MYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKV
                     IDIWAAANDRVSKAMMDNLQTETVINRDGVEEQQVSFNSIYMMADSGARGSAAQIRQL
                     AGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTR
                     RLVDVAQDLVVTEDDCGTLEGITMTPVIEGGDVKEPLRDRVLGRVTAEDILKPGTADI
                     LVPRNTLLHEHWCDLLEANSVDSVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEA
                     IGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNAKSVVNSAGK
                     LVVTSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGEQVAGGETVANWDPHTMPVITE
                     VSGFIRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTTGGKDLRPALKIVDAQGNDV
                     LIPGTDMPAQYFLPGKAIVQLEDGIQIGAGDALARIPQESSGTKDITGGLPRVADLFE
                     ARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSEPYEEMIPKWRQLNVFEGERV
                     ERGDVVSDGPEAPHDILRLRGVHAVTRYITNEVQDVYRLQGVKINDKHIEVIVRQMLR
                     KATIENAGSSEFLEGEQVEYSRVKIANRDLEANGKIGATFSRDLLGITKASLATESFI
                     SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEL
                     PAAPQVTAEDASASLAELLNAGLGGSDNE"
     gene            complement(12427..12744)
                     /locus_tag="ABLO17_RS01200"
                     /old_locus_tag="ABLO17_01200"
     CDS             complement(12427..12744)
                     /locus_tag="ABLO17_RS01200"
                     /old_locus_tag="ABLO17_01200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006176750.1"
                     /GO_function="GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /GO_process="GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS lactose/cellobiose transporter subunit IIA"
                     /protein_id="WP_008503455.1"
                     /translation="MEDLETTIMELLVNAGAARSAALTALQMARKGEFDEAEKAMEES
                     REYVKHAHTIQTQLIGLDEGTGKLPVNLITVHSQDHLMNAMVIQDLAGDMIELYRRIP
                     LVN"
     gene            complement(12744..13052)
                     /locus_tag="ABLO17_RS01205"
                     /old_locus_tag="ABLO17_01205"
     CDS             complement(12744..13052)
                     /locus_tag="ABLO17_RS01205"
                     /old_locus_tag="ABLO17_01205"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008503456.1"
                     /GO_function="GO:0008982 -
                     protein-N(PI)-phosphohistidine-sugar phosphotransferase
                     activity [Evidence IEA]"
                     /GO_process="GO:0008643 - carbohydrate transport [Evidence
                     IEA]; GO:0009401 - phosphoenolpyruvate-dependent sugar
                     phosphotransferase system [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="WP_010425948.1"
                     /translation="MKNIVLCCAAGMSTSMLVQRMKDAAQKKGVEVTIKAVPVAEFKD
                     NIATADIVLLGPQVKYEQAKLQAQADPLGKKVAVIDMMDYGMMKGDAVLEKALKLLES
                     "
     gene            complement(13234..14775)
                     /locus_tag="ABLO17_RS01210"
                     /old_locus_tag="ABLO17_01210"
     CDS             complement(13234..14775)
                     /locus_tag="ABLO17_RS01210"
                     /old_locus_tag="ABLO17_01210"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008503457.1"
                     /GO_function="GO:0052621 - diguanylate cyclase activity
                     [Evidence IEA]; GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor domain-containing diguanylate cyclase"
                     /protein_id="WP_348939971.1"
                     /translation="MALHSKKLSFTRPIMLSFAGILCSFAVIAIAVTLSQRKDFLEDY
                     HKINSNFTHNLAVNYTESILRENDYILGRAAMYFSRNDRLNETLNVNPTQGLQMMMHL
                     QNLMPTVSSISLADTQGHYLRVPEVLPTEKSKTFDPRTRPWFVAQAEASIFSHYTRPY
                     MDYFTGHPTVTLYKPLISPEGRLKGTIAFHLDLTSMGYTLRQMVAPVQGEFFVVERDG
                     AVVLHPDTGALFKQYVSEALMDKMTSGEGHLYDKKSNVWYYYYSFTNPDWFVIYRVSG
                     ETLTDITRHETTIVGWGFALAAIIIILFGLYLRHASRSVLMHIINAIKTGDVSEAPRL
                     EAMLSHTIQSNKEREMAYVRQATHDALTGCKNRRAFDSDIAELLNAQQPFALALVDID
                     NFKSINDTLGHLTGDIVLRNVAREGIQIMQPHDVSIYRYGGEEFAVIFQAEQMTSALS
                     LLEAWRTAVEKRVWREENLRVTFSGGLGEWHFEPLEQLVGSVDNALYSAKQQGKNRIN
                     RTSIS"
     gene            complement(15113..16240)
                     /gene="thiH"
                     /locus_tag="ABLO17_RS01215"
                     /old_locus_tag="ABLO17_01215"
     CDS             complement(15113..16240)
                     /gene="thiH"
                     /locus_tag="ABLO17_RS01215"
                     /old_locus_tag="ABLO17_01215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014882069.1"
                     /GO_function="GO:0016829 - lyase activity [Evidence IEA];
                     GO:1904047 - S-adenosyl-L-methionine binding [Evidence
                     IEA]"
                     /GO_process="GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-iminoacetate synthase ThiH"
                     /protein_id="WP_348939972.1"
                     /translation="MSTFTDRWQQLNWDDIALRINSKTAADVERALNARHLTREDLMA
                     LLSPAASAYLEPMAQRAQRLTRQRFGNTVSFYVPLYLSNLCANDCTYCGFSMSNRIRR
                     KTLDEGEIARECAAIREMGFEHLLLVTGEHQGKVGMGYFRQHLPAIRRQFASLQMEVQ
                     PLSQEEYAELKTLGLDGVMVYQETYHETTYARHHLKGKKQDFFFRLETPDRLGRAGID
                     KIGLGALIGLSDSWRVDCYMVAEHLLWLQQHYWQSRYSISFPRLRPCAGGIEPASLMD
                     ERQLVQTICAFRLLAPEVELSLSTRESPAFRDRVIPLAINNVSAFSKTQPGGYADDRP
                     ELEQFVPHDGRRPEAVAAALMAQGLQPVWKDWDSWLGRASQ"
     gene            complement(16237..17007)
                     /gene="thiG"
                     /locus_tag="ABLO17_RS01220"
                     /old_locus_tag="ABLO17_01220"
     CDS             complement(16237..17007)
                     /gene="thiG"
                     /locus_tag="ABLO17_RS01220"
                     /old_locus_tag="ABLO17_01220"
                     /EC_number="2.8.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418418.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="WP_348939973.1"
                     /translation="MLRIADKVFDSHLFTGTGKFASPQLMVDAIRESGSQLVTLALKR
                     VDLRHHSDAILAPLLEAGVTLLPNTSGAKTAEEAVFAAQLAREALGTRWLKLEIHPDA
                     RWLLPDPIETLKAAEKLVQQGFIVLPYCGADPVLCKRLEEVGCAAVMPLGAPIGSNQG
                     LETRAMLEIIIEQATVPVVVDAGIGVPSHAAQAMEMGADAVLVNTAIAVADDPVMMAR
                     AFRMAVEAGLLARESGPGSRSFQAQATSPLTGFLEAIS"
     gene            complement(17009..17209)
                     /gene="thiS"
                     /locus_tag="ABLO17_RS01225"
                     /old_locus_tag="ABLO17_01225"
     CDS             complement(17009..17209)
                     /gene="thiS"
                     /locus_tag="ABLO17_RS01225"
                     /old_locus_tag="ABLO17_01225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132879.1"
                     /GO_function="GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /GO_process="GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="WP_348939974.1"
                     /translation="MRILFNDEPMRCDGGLTVAALLDKLRQLKPGTALALNQQILPRE
                     QWEHQQVNEGDQILLFQVIAGG"
     gene            complement(17193..17948)
                     /locus_tag="ABLO17_RS01230"
                     /old_locus_tag="ABLO17_01230"
     CDS             complement(17193..17948)
                     /locus_tag="ABLO17_RS01230"
                     /old_locus_tag="ABLO17_01230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013095010.1"
                     /GO_function="GO:0008641 - ubiquitin-like modifier
                     activating enzyme activity [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HesA/MoeB/ThiF family protein"
                     /protein_id="WP_348939975.1"
                     /translation="MNDRDFMRYSRQILLEDIAIDGQQKLLASRVLIVGLGGLGAPAA
                     LYLAGAGVGTLVLADDDEVHLSNLQRQILFTTDDINQPKAQITRQRLNQLNPDIALIA
                     LQERLSGESLRREVALADVVLDCTDNMATRQAINAACVANNKPLITASAVGFGGQMMV
                     LTPPWTQGCYRCLWPDDAEPTRNCRTAGILGPVVGVMGTMQALEAIKLLSGMETERNT
                     LRLFDARSSGWRQLALRRASRCPVCGGRDAHSV"
     gene            complement(17935..18576)
                     /gene="thiE"
                     /locus_tag="ABLO17_RS01235"
                     /old_locus_tag="ABLO17_01235"
     CDS             complement(17935..18576)
                     /gene="thiE"
                     /locus_tag="ABLO17_RS01235"
                     /old_locus_tag="ABLO17_01235"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015569969.1"
                     /GO_function="GO:0004789 - thiamine-phosphate
                     diphosphorylase activity [Evidence IEA]"
                     /GO_process="GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="WP_348939976.1"
                     /translation="MYQPDFPPVPYRLGLYPVVDSVAWIERLLEAGVRTIQLRIKDKR
                     DEEVEADVVAAIALGRRYNARLFINDYWRLAVKHRAYGVHLGQEDLETTDLSAIREAG
                     LRLGVSTHDDMEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLTQLASHVKRLADYP
                     TVAIGGISLERAPAVLETGVGSIAVVSAITQAADWRSATEQLLQLAGAGDERS"
     gene            complement(18576..20471)
                     /gene="thiC"
                     /locus_tag="ABLO17_RS01240"
                     /old_locus_tag="ABLO17_01240"
     CDS             complement(18576..20471)
                     /gene="thiC"
                     /locus_tag="ABLO17_RS01240"
                     /old_locus_tag="ABLO17_01240"
                     /EC_number="4.1.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463033.1"
                     /GO_function="GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /GO_process="GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="WP_348939977.1"
                     /translation="MSTVKLTRREQRAQAQHFIDTLEGSAFPNSKRIYISGSQADIRV
                     PMREIQLSPTLIGGSKDNPQYEDNEAVPVYDTSGPYGDPSVTINVQQGLAKLRQPWID
                     ARNDCEELSVRSSAYTKERLADDGLDELRFTGLLTPKRAKAGKCVTQLHYARRGIVTP
                     EMEFIAIRENMGRERIRSEVLRYQHPGEGFGARLPENITPEFVRDEVAAGRAIIPANI
                     NHPESEPMIIGRNFLVKVNANIGNSAVTSSIEEEVEKLVWSTRWGADTVMDLSTGRYI
                     HETREWILRNSPVPIGTVPIYQALEKVNGIAEDLTWEAFRDTLLEQAEQGVDYFTIHA
                     GVLLRYVPMTAKRLTGIVSRGGSIMAKWCLSHHRENFLYEHFREICEICAAYDVSLSL
                     GDGLRPGSIRDANDEAQFAELHTLGELTKIAWEYDVQVMIEGPGHVPMQMIRRNMTEE
                     LEHCHEAPFYTLGPLTTDIAPGYDHFTSGIGAAMIGWFGCAMLCYVTPKEHLGLPNKE
                     DVKQGLITYKIAAHAADLAKGHPGAQIRDNAMSKARFEFRWEDQFNLALDPFTARAYH
                     DETLPQESGKVAHFCSMCGPKFCSMKISQEVRDYAAAQTIEVGMADMSETFRARGGEI
                     YLKKEEA"
     regulatory      complement(20550..20661)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            complement(20716..21213)
                     /locus_tag="ABLO17_RS01245"
                     /old_locus_tag="ABLO17_01245"
     CDS             complement(20716..21213)
                     /locus_tag="ABLO17_RS01245"
                     /old_locus_tag="ABLO17_01245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014882075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rsd/AlgQ family anti-sigma factor"
                     /protein_id="WP_032662962.1"
                     /translation="MLNQLQSLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKE
                     SFMRLNEKALDDFCQGLVDYLSDGHFNIYERIIREMEGTTPYLAASKLYPLLEANTQQ
                     IMDYYDSALENAIDHDNYLEFQQALSDLGEALEERFTLEDKLIALVLDNDLNISNEEN
                     VARPA"
     gene            21309..22082
                     /gene="nudC"
                     /locus_tag="ABLO17_RS01250"
                     /old_locus_tag="ABLO17_01250"
     CDS             21309..22082
                     /gene="nudC"
                     /locus_tag="ABLO17_RS01250"
                     /old_locus_tag="ABLO17_01250"
                     /EC_number="3.6.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312946.1"
                     /GO_function="GO:0016787 - hydrolase activity [Evidence
                     IEA]; GO:0000210 - NAD+ diphosphatase activity [Evidence
                     IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) diphosphatase"
                     /protein_id="WP_126331237.1"
                     /translation="MDRIIEKSDLGWWIVSHEQKLWLPAGEIPYGAAEAFDLVGQPAL
                     QIGEWQGEPVWLIQQPRRQDMGSVRQVLDLDVGLFQLAGRGVQLAEFYRSHKYCGYCG
                     HTMRPSKTEWAMLCSHCRERYYPQIAPCIIVAIRREDSILLAQHTRHRNGIYTVLAGF
                     VEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPFPQSLMTAFMAEYDSGEIVIDQK
                     ELLDANWYRYDDLPLLPPPGTVARRLIEDTVAMCRAEYE"
     gene            22121..23185
                     /gene="hemE"
                     /locus_tag="ABLO17_RS01255"
                     /old_locus_tag="ABLO17_01255"
     CDS             22121..23185
                     /gene="hemE"
                     /locus_tag="ABLO17_RS01255"
                     /old_locus_tag="ABLO17_01255"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005224516.1"
                     /GO_function="GO:0004853 - uroporphyrinogen decarboxylase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="WP_348939978.1"
                     /translation="MTELKNDRYLRALLRQPVDVTPVWMMRQAGRYLPEYKATRAQAG
                     DFMSLCKNAELACEVTLQPLRRFPLDAAILFSDILTIPDAMGLGLYFETGEGPRFTSP
                     IKSKADVDKLPIPDPEGELGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGS
                     SKAFTMIKKMMYAEPLALHALLDKLAKSVTLYLNAQIKAGAQSVMIFDTWGGVLTGRD
                     YQQFSLYYMHKIVDGLLRENEGRRVPVTLFTKGGGQWLEAMAATGCDALGLDWTTDIA
                     DARRRVGDKVALQGNMDPSMLYALPARIEEEVSTILSGFGQGEGHVFNLGHGIHQDVP
                     PEHAGVFVEAVHRLSAQYHK"
     gene            23195..23866
                     /gene="nfi"
                     /locus_tag="ABLO17_RS01260"
                     /old_locus_tag="ABLO17_01260"
     CDS             23195..23866
                     /gene="nfi"
                     /locus_tag="ABLO17_RS01260"
                     /old_locus_tag="ABLO17_01260"
                     /EC_number="3.1.21.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463037.1"
                     /GO_function="GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /GO_process="GO:0006281 - DNA repair [Evidence IEA]"
                     /note="cleaves DNA at apurinic or apyrimidinic sites;
                     cleaves DNA at apurinic or apyrimidinic sites; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease V"
                     /protein_id="WP_348939979.1"
                     /translation="MDLASLRAQQIELASSVIRGDRLDKDPPQYIGGADVGFEQDGEV
                     TRAAMVVLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEQLSQKPDLLFV
                     DGHGISHPRRLGVASHFGLLVDVPTIGVAKKRLCGAFEPLSAEPGALAPLIHKGEQLA
                     WVWRSKARCNPLFIATGHRVSMDSALAWVQRCMKGYRLPEPTRWADAVASSRPAFVRW
                     QEIQR"
     gene            23908..24498
                     /locus_tag="ABLO17_RS01265"
                     /old_locus_tag="ABLO17_01265"
     CDS             23908..24498
                     /locus_tag="ABLO17_RS01265"
                     /old_locus_tag="ABLO17_01265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005224518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjaG family protein"
                     /protein_id="WP_023309980.1"
                     /translation="MLQNPIHLRLEKLESWQHVTFMACLCERMYPNYAAFCKETGFGD
                     GHIYRRILDLIWETLTVKDAKVNFDSQLEKLEEAIPAADDFDLYGVYPAIDACVALSE
                     LLHSRLSGETLEHAIEVSKASITTVAMLEMTQEGREMTDEELRANPAVEQEWDIQWEI
                     FRLLAECEERDIELIKGLRADLREAGESNIGIIFNQ"
     gene            24685..24957
                     /gene="hupA"
                     /locus_tag="ABLO17_RS01270"
                     /old_locus_tag="ABLO17_01270"
     CDS             24685..24957
                     /gene="hupA"
                     /locus_tag="ABLO17_RS01270"
                     /old_locus_tag="ABLO17_01270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017460010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid-associated protein HU-alpha"
                     /protein_id="WP_002445246.1"
                     /translation="MNKTQLIDVIADKADLSKVQAKAALESTLAAITESLKEGDAVQL
                     VGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK"
     gene            24969..25661
                     /locus_tag="ABLO17_RS01275"
                     /old_locus_tag="ABLO17_01275"
     CDS             24969..25661
                     /locus_tag="ABLO17_RS01275"
                     /old_locus_tag="ABLO17_01275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010425913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1481 domain-containing protein"
                     /protein_id="WP_047651713.1"
                     /translation="MNSFSEGAATPLLSFWRGTLALAGMLLLSACSHDTSLPPFTASG
                     YADNQGAVRIWRKDSGDEVHLLSAFSPWHNGNTSTAEYRWQGDDLSLIELNVYSKTPE
                     HVKVRFDDHGELSFMQREVSGQKQQLSSDQIALYRYRAEQIRQTSDALRLGRVVLRQG
                     RWHADGTVTTCEGQTVKPELESWATEHIQRRQRHSSMEVSVAWLEAPEGSQLLLVANE
                     DFCTWQPTEKSF"
     gene            complement(25711..27003)
                     /gene="purD"
                     /locus_tag="ABLO17_RS01280"
                     /old_locus_tag="ABLO17_01280"
     CDS             complement(25711..27003)
                     /gene="purD"
                     /locus_tag="ABLO17_RS01280"
                     /old_locus_tag="ABLO17_01280"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010425912.1"
                     /GO_function="GO:0004637 - phosphoribosylamine-glycine
                     ligase activity [Evidence IEA]"
                     /GO_process="GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]; GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="WP_348939980.1"
                     /translation="MKVLVIGNGGREHALAWKAAQSPLVKTVFVAPGNAGTALEPALQ
                     NVAIGVTDIPALLSFAQSEKIDLTIVGPEAPLVIGVVDAFRAAGLTIFGPTEGAAQLE
                     GSKAFTKDFLARHNIPTAEYQNFTEVEPALAYLREKGAPIVIKADGLAAGKGVIVAMT
                     LEEAEAAVQDMLAGNAFGDAGHRIVIEEFLDGEEASFIVMVDGEHVLPMATSQDHKRV
                     GNGDTGPNTGGMGAYSPAPVVTDEVHQRTMDRVIWPTVKGMAAEGNTYTGFLYAGLMI
                     DKQGNPKVIEFNCRFGDPETQPIMLRMKSDLVELCLAACEGKLDEKTSEWDERASLGV
                     VIAAGGYPGNYNTGDEIHGLPLEEIEGAKVFHAGTKLAEDDRVLTNGGRVLCATALGH
                     TVAEAQKRAYALMADIHWNGSFSRQDIGYRAIAREQGE"
     gene            complement(27019..28608)
                     /gene="purH"
                     /locus_tag="ABLO17_RS01285"
                     /old_locus_tag="ABLO17_01285"
     CDS             complement(27019..28608)
                     /gene="purH"
                     /locus_tag="ABLO17_RS01285"
                     /old_locus_tag="ABLO17_01285"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132841.1"
                     /GO_function="GO:0003937 - IMP cyclohydrolase activity
                     [Evidence IEA]; GO:0004643 -
                     phosphoribosylaminoimidazolecarboxamide formyltransferase
                     activity [Evidence IEA]"
                     /GO_process="GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="WP_047651710.1"
                     /translation="MQQRRPVRRALLSVSDKAGIVEFAQALSARGVELLSTGGTARLL
                     ADKGLPVTEVSDYTGFPEMMDGRVKTLHPKVHGGILGRRGQDDAIMEQHDIAPIDMVV
                     VNLYPFAQTVAREGCSLEDAVENIDIGGPTMVRSAAKNHKDVAIVVKSSDYNTIINEM
                     DANEGSLTLETRFDLAIKAFEHTAAYDSMIANYFGSLVPAYHGESKDPSGRFPRTLNL
                     NFIKKQDMRYGENSHQQAAFYIEEEVKEASVATAQQVQGKALSYNNIADTDAALECVK
                     EFNEPACVIVKHANPCGVAVSTSILDAYDRAYKTDPTSAFGGIIAFNRELDAETAQAI
                     ISRQFVEVIIAPSASEEALKITAAKQNVRVLVCGQWAKRVPGLDFKRVNGGLLVQDRD
                     LGMVTEADLRVVTKRQPSEQELRDALFCWKVAKFVKSNAIVYAKENMTIGIGAGQMSR
                     VYSAKIAGIKAGDEGLEVKGSAMASDAFFPFRDGIDAAAAVGITCVIQPGGSIRDDEV
                     IAAADEHGIAMIFTDMRHFRH"
CONTIG      join(JBDZYM010000002.1:1..28867)
//
Feature
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