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NCBI Reference Sequence: NZ_JBDLMJ010000193.1
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LOCUS NZ_JBDLMJ010000193 209 bp DNA linear CON 03-AUG-2024 DEFINITION Pseudomonas asgharzadehiana strain Phyllo_192 NODE_265_length_209_cov_64.484848, whole genome shotgun sequence. ACCESSION NZ_JBDLMJ010000193 NZ_JBDLMJ010000000 VERSION NZ_JBDLMJ010000193.1 DBLINK BioProject: PRJNA224116 BioSample: SAMN40556839 Assembly: GCF_041008195.1 KEYWORDS WGS; RefSeq. SOURCE Pseudomonas asgharzadehiana ORGANISM Pseudomonas asgharzadehiana Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 209) AUTHORS Herr,K., Schieber,J. and Hendry,T. TITLE Pseudomonads in the phyllosphere JOURNAL Unpublished REFERENCE 2 (bases 1 to 209) AUTHORS Herr,K. and Hendry,T. TITLE Direct Submission JOURNAL Submitted (03-APR-2024) Microbiology, Cornell University, 123 Wing Hall, Ithaca, NY 14851, USA COMMENT REFSEQ INFORMATION: The reference sequence is identical to JBDLMJ010000193.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 05-MAR-2023 Assembly Method :: SPAdes v. 3.15.5 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 22.406011x Sequencing Technology :: Illumina MiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_041008195.1-RS_2024_08_02 Annotation Date :: 08/02/2024 15:50:03 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 5,637 CDSs (total) :: 5,566 Genes (coding) :: 5,475 CDSs (with protein) :: 5,475 Genes (RNA) :: 71 rRNAs :: 2, 2, 4 (5S, 16S, 23S) complete rRNAs :: 2 (5S) partial rRNAs :: 2, 4 (16S, 23S) tRNAs :: 59 ncRNAs :: 4 Pseudo Genes (total) :: 91 CDSs (without protein) :: 91 Pseudo Genes (ambiguous residues) :: 0 of 91 Pseudo Genes (frameshifted) :: 18 of 91 Pseudo Genes (incomplete) :: 80 of 91 Pseudo Genes (internal stop) :: 2 of 91 Pseudo Genes (multiple problems) :: 9 of 91 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..209 /organism="Pseudomonas asgharzadehiana" /mol_type="genomic DNA" /submitter_seqid="NODE_265_length_209_cov_64.484848" /strain="Phyllo_192" /isolation_source="Pisum sativum Leaf" /host="Pisum sativum" /db_xref="taxon:2842349" /geo_loc_name="USA: New York, Ithaca" /lat_lon="42.49 N 76.60 W" /collection_date="2019-07-02" gene <1..>209 /locus_tag="ABFV51_RS28150" /old_locus_tag="ABFV51_28125" /pseudo CDS <1..>209 /locus_tag="ABFV51_RS28150" /old_locus_tag="ABFV51_28125" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_012723797.1" /note="incomplete; too short partial abutting assembly gap; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="rhs family protein" CONTIG join(JBDLMJ010000193.1:1..209) //
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