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Pseudomonas asgharzadehiana strain Phyllo_192 NODE_265_length_209_cov_64.484848, whole genome shotgun sequence

NCBI Reference Sequence: NZ_JBDLMJ010000193.1

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LOCUS       NZ_JBDLMJ010000193       209 bp    DNA     linear   CON 03-AUG-2024
DEFINITION  Pseudomonas asgharzadehiana strain Phyllo_192
            NODE_265_length_209_cov_64.484848, whole genome shotgun sequence.
ACCESSION   NZ_JBDLMJ010000193 NZ_JBDLMJ010000000
VERSION     NZ_JBDLMJ010000193.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40556839
            Assembly: GCF_041008195.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas asgharzadehiana
  ORGANISM  Pseudomonas asgharzadehiana
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 209)
  AUTHORS   Herr,K., Schieber,J. and Hendry,T.
  TITLE     Pseudomonads in the phyllosphere
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 209)
  AUTHORS   Herr,K. and Hendry,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-APR-2024) Microbiology, Cornell University, 123 Wing
            Hall, Ithaca, NY 14851, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBDLMJ010000193.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 05-MAR-2023
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 22.406011x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_041008195.1-RS_2024_08_02
            Annotation Date                   :: 08/02/2024 15:50:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,637
            CDSs (total)                      :: 5,566
            Genes (coding)                    :: 5,475
            CDSs (with protein)               :: 5,475
            Genes (RNA)                       :: 71
            rRNAs                             :: 2, 2, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 2, 4 (16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 91
            CDSs (without protein)            :: 91
            Pseudo Genes (ambiguous residues) :: 0 of 91
            Pseudo Genes (frameshifted)       :: 18 of 91
            Pseudo Genes (incomplete)         :: 80 of 91
            Pseudo Genes (internal stop)      :: 2 of 91
            Pseudo Genes (multiple problems)  :: 9 of 91
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..209
                     /organism="Pseudomonas asgharzadehiana"
                     /mol_type="genomic DNA"
                     /submitter_seqid="NODE_265_length_209_cov_64.484848"
                     /strain="Phyllo_192"
                     /isolation_source="Pisum sativum Leaf"
                     /host="Pisum sativum"
                     /db_xref="taxon:2842349"
                     /geo_loc_name="USA: New York, Ithaca"
                     /lat_lon="42.49 N 76.60 W"
                     /collection_date="2019-07-02"
     gene            <1..>209
                     /locus_tag="ABFV51_RS28150"
                     /old_locus_tag="ABFV51_28125"
                     /pseudo
     CDS             <1..>209
                     /locus_tag="ABFV51_RS28150"
                     /old_locus_tag="ABFV51_28125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012723797.1"
                     /note="incomplete; too short partial abutting assembly
                     gap; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="rhs family protein"
CONTIG      join(JBDLMJ010000193.1:1..209)
//
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