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NCBI Reference Sequence: NZ_JAZIFT010000044.1
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LOCUS NZ_JAZIFT010000044 368 bp DNA linear CON 09-MAR-2024 DEFINITION Citrobacter arsenatis strain GNBHU02 Ec44, whole genome shotgun sequence. ACCESSION NZ_JAZIFT010000044 NZ_JAZIFT010000000 VERSION NZ_JAZIFT010000044.1 DBLINK BioProject: PRJNA224116 BioSample: SAMN39305859 Assembly: GCF_037070825.1 KEYWORDS WGS; RefSeq. SOURCE Citrobacter arsenatis ORGANISM Citrobacter arsenatis Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Citrobacter. REFERENCE 1 (bases 1 to 368) AUTHORS Singh,A., Singh,A.N., Yadav,D.P. and Nath,G. TITLE Lean patient associated-Citrobacter arsenatis JOURNAL Unpublished REFERENCE 2 (bases 1 to 368) AUTHORS Singh,A., Singh,A.N., Yadav,D.P. and Nath,G. TITLE Direct Submission JOURNAL Submitted (09-JAN-2024) Microbiology, Institute of Medical Sciences, Banaras Hindu University, Bhu-Lanka Road, Varanasi, Uttar Pradesh 221005, India COMMENT REFSEQ INFORMATION: The reference sequence is identical to JAZIFT010000044.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 01-DEC-2023 Assembly Method :: Unicycler v. December-2023 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 5468292.0x Sequencing Technology :: Illumina NovaSeq 6000 ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 03/08/2024 11:55:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 5,229 CDSs (total) :: 5,147 Genes (coding) :: 5,050 CDSs (with protein) :: 5,050 Genes (RNA) :: 82 rRNAs :: 1, 1, 2 (5S, 16S, 23S) complete rRNAs :: 1, 1 (5S, 16S) partial rRNAs :: 2 (23S) tRNAs :: 69 ncRNAs :: 9 Pseudo Genes (total) :: 97 CDSs (without protein) :: 97 Pseudo Genes (ambiguous residues) :: 0 of 97 Pseudo Genes (frameshifted) :: 38 of 97 Pseudo Genes (incomplete) :: 64 of 97 Pseudo Genes (internal stop) :: 26 of 97 Pseudo Genes (multiple problems) :: 23 of 97 Pseudo Genes (short protein) :: 1 of 97 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..368 /organism="Citrobacter arsenatis" /mol_type="genomic DNA" /submitter_seqid="Ec44" /strain="GNBHU02" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:2546350" /geo_loc_name="India: Sir Sundar Lal Hospital, Varanasi, Uttar Pradesh" /lat_lon="25.31 N 82.97 E" /collection_date="2023-03-15" /collected_by="Aprajita Singh" gene <1..>368 /locus_tag="VPH66_RS26110" CDS <1..>368 /locus_tag="VPH66_RS26110" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001562062.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="phage baseplate assembly protein V" /protein_id="WP_336286014.1" /translation="PARVESTQKGDTYSWLDPDGRYRVKLDFDRNSPEQGYAYLWLRL AKPYAGDTYGFHSPLLDGTEVAVVFDGGDPDRPYIAYALHDSEHPDHVTSDNHTRNVW RTPANNKLRMEDKRQEEHIKL" CONTIG join(JAZIFT010000044.1:1..368) //
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