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Citrobacter arsenatis strain GNBHU02 Ec44, whole genome shotgun sequence

NCBI Reference Sequence: NZ_JAZIFT010000044.1

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LOCUS       NZ_JAZIFT010000044       368 bp    DNA     linear   CON 09-MAR-2024
DEFINITION  Citrobacter arsenatis strain GNBHU02 Ec44, whole genome shotgun
            sequence.
ACCESSION   NZ_JAZIFT010000044 NZ_JAZIFT010000000
VERSION     NZ_JAZIFT010000044.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39305859
            Assembly: GCF_037070825.1
KEYWORDS    WGS; RefSeq.
SOURCE      Citrobacter arsenatis
  ORGANISM  Citrobacter arsenatis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Citrobacter.
REFERENCE   1  (bases 1 to 368)
  AUTHORS   Singh,A., Singh,A.N., Yadav,D.P. and Nath,G.
  TITLE     Lean patient associated-Citrobacter arsenatis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 368)
  AUTHORS   Singh,A., Singh,A.N., Yadav,D.P. and Nath,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JAN-2024) Microbiology, Institute of Medical
            Sciences, Banaras Hindu University, Bhu-Lanka Road, Varanasi, Uttar
            Pradesh 221005, India
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAZIFT010000044.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-DEC-2023
            Assembly Method        :: Unicycler v. December-2023
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 5468292.0x
            Sequencing Technology  :: Illumina NovaSeq 6000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 03/08/2024 11:55:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,229
            CDSs (total)                      :: 5,147
            Genes (coding)                    :: 5,050
            CDSs (with protein)               :: 5,050
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 69
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 97
            CDSs (without protein)            :: 97
            Pseudo Genes (ambiguous residues) :: 0 of 97
            Pseudo Genes (frameshifted)       :: 38 of 97
            Pseudo Genes (incomplete)         :: 64 of 97
            Pseudo Genes (internal stop)      :: 26 of 97
            Pseudo Genes (multiple problems)  :: 23 of 97
            Pseudo Genes (short protein)      :: 1 of 97
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..368
                     /organism="Citrobacter arsenatis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="Ec44"
                     /strain="GNBHU02"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:2546350"
                     /geo_loc_name="India: Sir Sundar Lal Hospital, Varanasi,
                     Uttar Pradesh"
                     /lat_lon="25.31 N 82.97 E"
                     /collection_date="2023-03-15"
                     /collected_by="Aprajita Singh"
     gene            <1..>368
                     /locus_tag="VPH66_RS26110"
     CDS             <1..>368
                     /locus_tag="VPH66_RS26110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001562062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage baseplate assembly protein V"
                     /protein_id="WP_336286014.1"
                     /translation="PARVESTQKGDTYSWLDPDGRYRVKLDFDRNSPEQGYAYLWLRL
                     AKPYAGDTYGFHSPLLDGTEVAVVFDGGDPDRPYIAYALHDSEHPDHVTSDNHTRNVW
                     RTPANNKLRMEDKRQEEHIKL"
CONTIG      join(JAZIFT010000044.1:1..368)
//
Feature
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