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Sneathia vaginalis strain CCUG 52976 CCUG52976_contig_00106, whole genome shotgun sequence

NCBI Reference Sequence: NZ_JASSPO010000078.1

FASTA Graphics 

LOCUS       NZ_JASSPO010000078       370 bp    DNA     linear   CON 12-DEC-2024
DEFINITION  Sneathia vaginalis strain CCUG 52976 CCUG52976_contig_00106, whole
            genome shotgun sequence.
ACCESSION   NZ_JASSPO010000078 NZ_JASSPO010000000
VERSION     NZ_JASSPO010000078.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN35558468
            Assembly: GCF_030238485.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sneathia vaginalis
  ORGANISM  Sneathia vaginalis
            Bacteria; Fusobacteriati; Fusobacteriota; Fusobacteriia;
            Fusobacteriales; Leptotrichiaceae; Sneathia.
REFERENCE   1  (bases 1 to 370)
  AUTHORS   Mccoy,Z.T., Serrano,M.G., Spaine,K., Edwards,D.J., Buck,G.A. and
            Jefferson,K.
  TITLE     Antibody response to the Sneathia vaginalis cytopathogenic toxin A
            during pregnancy
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 370)
  AUTHORS   Jefferson,K., Serrano,M.G. and Buck,G.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-JUN-2023) Microbiology and Immunology, Virginia
            Commonwealth University, 1101 E Marshall St, Richmond, VA 23298,
            USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JASSPO010000078.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 15-APR-2013
            Assembly Method        :: Newbler v. 2.8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 14.0x
            Sequencing Technology  :: 454
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030238485.1-RS_2024_12_11
            Annotation Date                   :: 12/11/2024 19:04:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,509
            CDSs (total)                      :: 1,450
            Genes (coding)                    :: 1,344
            CDSs (with protein)               :: 1,344
            Genes (RNA)                       :: 59
            rRNAs                             :: 5, 7, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 6, 3 (16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 106
            CDSs (without protein)            :: 106
            Pseudo Genes (ambiguous residues) :: 1 of 106
            Pseudo Genes (frameshifted)       :: 65 of 106
            Pseudo Genes (incomplete)         :: 48 of 106
            Pseudo Genes (internal stop)      :: 8 of 106
            Pseudo Genes (multiple problems)  :: 15 of 106
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..370
                     /organism="Sneathia vaginalis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="CCUG52976_contig_00106"
                     /strain="CCUG 52976"
                     /isolation_source="human blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:187101"
                     /geo_loc_name="France: Strasbourg"
                     /collection_date="2004"
     gene            122..295
                     /locus_tag="QQA44_RS07465"
                     /old_locus_tag="QQA44_07470"
     CDS             122..295
                     /locus_tag="QQA44_RS07465"
                     /old_locus_tag="QQA44_07470"
                     /inference="COORDINATES: protein motif:HMM:NF037419.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PBECR4 domain-containing protein"
                     /protein_id="WP_285162550.1"
                     /translation="MNKIKEIYNWYKQFNNKEIVIQTENKNLGIKITNTALPHLLGLQ
                     YIEEKATKLIGQI"
CONTIG      join(JASSPO010000078.1:1..370)
//
Feature
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