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NCBI Reference Sequence: NZ_JAOXEE010000028.1
FASTA Graphics
LOCUS NZ_JAOXEE010000028 26256 bp DNA linear CON 21-DEC-2024 DEFINITION Coxiella burnetii strain CB213 NODE_28_length_26256_cov_524.552_ID_55, whole genome shotgun sequence. ACCESSION NZ_JAOXEE010000028 NZ_JAOXEE010000000 VERSION NZ_JAOXEE010000028.1 DBLINK BioProject: PRJNA224116 BioSample: SAMN30428928 Assembly: GCF_025990375.1 KEYWORDS WGS; RefSeq. SOURCE Coxiella burnetii ORGANISM Coxiella burnetii Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Legionellales; Coxiellaceae; Coxiella. REFERENCE 1 (bases 1 to 26256) AUTHORS Abou-Abdallah,R. TITLE Pangenomic analysis of C. burnetii unveils new traits in genome architecture JOURNAL Unpublished REFERENCE 2 (bases 1 to 26256) AUTHORS Abou-Abdallah,R. TITLE Direct Submission JOURNAL Submitted (21-AUG-2022) VITROME, IHU Mediterranee Infection, 19-21 Boulevard Jean Moulin, Marseille 13005, France COMMENT REFSEQ INFORMATION: The reference sequence is identical to JAOXEE010000028.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: SPAdes v. 3.10.1 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 1126.849985x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_025990375.1-RS_2024_12_21 Annotation Date :: 12/21/2024 04:05:48 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,415 CDSs (total) :: 2,366 Genes (coding) :: 2,097 CDSs (with protein) :: 2,097 Genes (RNA) :: 49 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 42 ncRNAs :: 4 Pseudo Genes (total) :: 269 CDSs (without protein) :: 269 Pseudo Genes (ambiguous residues) :: 0 of 269 Pseudo Genes (frameshifted) :: 131 of 269 Pseudo Genes (incomplete) :: 144 of 269 Pseudo Genes (internal stop) :: 27 of 269 Pseudo Genes (multiple problems) :: 33 of 269 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..26256 /organism="Coxiella burnetii" /mol_type="genomic DNA" /submitter_seqid="NODE_28_length_26256_cov_524.552_ID_55" /strain="CB213" /host="Homo sapiens" /db_xref="taxon:777" /geo_loc_name="France" /collection_date="2016" gene complement(<1..400) /locus_tag="OO627_RS06475" CDS complement(<1..400) /locus_tag="OO627_RS06475" /inference="COORDINATES: protein motif:HMM:NF013698.5" /GO_function="GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]" /GO_process="GO:0006313 - DNA transposition [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="IS110 family transposase" /protein_id="WP_409241319.1" /translation="MDPPLKDGVIMRQHRISIFKKRRRSMKDIKILGVDIAKDVFQLC GIDEWGKVIYTRRVKRAQYVSTVASLKVGCVVMEACGGANHWYRTFMGMGIPTQLISP QHVKPYVKSNKNDRNDAQAIAEAASRASMRF" gene 495..2606 /locus_tag="OO627_RS06480" /pseudo CDS 495..2606 /locus_tag="OO627_RS06480" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_011997397.1" /note="frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="CbuK_2014 family Dot/Icm T4SS effector" gene complement(2577..3410) /gene="prmC" /locus_tag="OO627_RS06485" CDS complement(2577..3410) /gene="prmC" /locus_tag="OO627_RS06485" /EC_number="2.1.1.297" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_820939.1" /GO_function="GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]" /GO_process="GO:0018364 - peptidyl-glutamine methylation [Evidence IEA]; GO:0006412 - translation [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="peptide chain release factor N(5)-glutamine methyltransferase" /protein_id="WP_010958568.1" /translation="MLSIKEATKNISQQLTTVSKTPRLDAELLLECVLKKSRADLFAY PEIQLNSSQQKTLSAYVKRRLKGEPIAYILGQKEFWSLNLKVTPDVLIPRPETEMLVE WILKNLPKDEKLRIADLGTGSGAVALAIAVERPHWTIDATDNSQAALKIAEINAKQHE IKNCNFYHGEWCQALPRRDYHAIVGNPPYIPDKDQHLQQLKHEPREALAAGSDGLSAI KIIIHEAKSYLVNGGWLLLEHGYDQAEKIMTLMQADGYREITDRRDLAGLSRMMVARR G" gene complement(3413..4498) /gene="prfA" /locus_tag="OO627_RS06490" CDS complement(3413..4498) /gene="prfA" /locus_tag="OO627_RS06490" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_820940.1" /GO_function="GO:0003747 - translation release factor activity [Evidence IEA]" /GO_process="GO:0006415 - translational termination [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="peptide chain release factor 1" /protein_id="WP_005772919.1" /translation="MKPSLIEKLKTLTYRYSEIGGLLSDSTVINDQDRYRELGKEYAQ LEPIVKCFQQFQQNEKAIESAEEMQQEKDPELRKLAEEELEQLTLKKEELEDQLKLLL VPKDPNDERNVFLEIRAGTGGNEAAIFAGDLFRMYARYAETKGWRVNIVSAHEGEHGG FKEVIARVIGEGVYSQLKFESGAHRVQRVPVTESQGRIHTSACTVAIMPEVDEIDQIK INPAELRIDTFRASGAGGQHVNRTDSAIRITHLPTGVVVECQDERSQHKNKARAMSLL QSKLLAAERAKQDQEQAAKRKSLVGSGDRSERIRTYNFPQGRVTDHRINLTLYQLDEV IEGDLDPVIGPLIRELQAEQLAELSGE" gene complement(4495..5736) /gene="hemA" /locus_tag="OO627_RS06495" CDS complement(4495..5736) /gene="hemA" /locus_tag="OO627_RS06495" /EC_number="1.2.1.70" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_820941.1" /GO_function="GO:0008883 - glutamyl-tRNA reductase activity [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="glutamyl-tRNA reductase" /protein_id="WP_005769672.1" /translation="MPLLVCGINHQSAPLTVREKLVFTPERTPLALQSLLAEKAVNEA LLLSTCNRTEIYTTVDEAATILRWLSKQPQLSGIDLRSFCYARRDIEMVRHVMRVGSG LDSMVLGEPQILGQMKQAYLLARRIGAVGSELGRLFPAVFAATKRIRSETAIGANPVS IAYAVVQLAKRIFSHLNQCQILLIGAGETIELVFSHLYNQGARHFFIANRTLTRAKQI AEPYHAQAIRLSDIPTYLPKVDIVISATMSQLPLVGKGAVESALRQRKRRPLFMADLA LPRDIEPETAQLEDVYLYNIDDLQTLIAQNRQTREAAAKQAEAMVEMQAIHYMRQLQV HKAGDTIRRFRERVEMLRDQELEKALAHFQRTNDPKAVIAHFAHNLTNKILHQPTTKL RQAAYEDQVQLLLSAKELFDL" gene 5813..7042 /locus_tag="OO627_RS06500" CDS 5813..7042 /locus_tag="OO627_RS06500" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_820942.1" /GO_function="GO:0022857 - transmembrane transporter activity [Evidence IEA]" /GO_process="GO:0055085 - transmembrane transport [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="multidrug effflux MFS transporter" /protein_id="WP_040953446.1" /translation="MHKFRLSGRKTTIRYKQHMKKNLIVILTSVFVTVGQFAMALYLP ALPALTTYFHTFPGVIQLSLTLFLIAFGFSQLFYGSLSDCYGRKPLLLIGLVIVMIGF LIAVFARHLSLLLIARVVQGLGAGSVSVLARAVIRDRFEGEKLVQALSLLIMAASLAP MIAPFIGGHIQHRLGWHSIFIFLFFYSGLILLSIFFLLPETKKTESVPFKMGALLNNY KLLLRHPIYIKYVVCIIMAYACQILYLSISPFIFQNGLKLNAAQYSTIITLPAIGYFV GNFLSTRLIRFFDSNHLVFVGALIVVMAGIALALEAAFNGLSAFSVITPIIFCVIGIG LIYPNVISGSLSPFPQMAGTAAALSGAIQMAGTSSIAGVTNALHVVSVLGLGISFLLC GAVVLLMIFRIMRTSVQ" gene complement(7020..7373) /locus_tag="OO627_RS06505" CDS complement(7020..7373) /locus_tag="OO627_RS06505" /EC_number="4.1.2.25" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_820943.3" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="dihydroneopterin aldolase" /protein_id="WP_012220054.1" /translation="MDKLFIRNLRVPAQVGILSHEKAEKQILSIDIVYHINAKQAALS DEILHTIDYASVRENLIHFLNDHRFNLIETLAERCADFLLTRFKMSWLQLSITKPSIF DDADGAGIIIERTSS" gene complement(7366..7809) /gene="dksA" /locus_tag="OO627_RS06510" CDS complement(7366..7809) /gene="dksA" /locus_tag="OO627_RS06510" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_820944.1" /GO_function="GO:0019899 - enzyme binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]" /GO_process="GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="RNA polymerase-binding protein DksA" /protein_id="WP_005769678.1" /translation="MAVSKAMKTKTTDLGFSPYKLTRGEEYMNEKQQEHFRKILSEWK KQLMEEVDSTVVHLKEEASVYADPLDRASQEEGFNLELRTRDRERKLIKKIEQAADAL DNGDYGFCEDCGAEIGIRRLEARPTATKCIDCKTFEEIREKQSGG" gene complement(7951..8781) /gene="dapF" /locus_tag="OO627_RS06515" CDS complement(7951..8781) /gene="dapF" /locus_tag="OO627_RS06515" /EC_number="5.1.1.7" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_820945.1" /GO_function="GO:0008837 - diaminopimelate epimerase activity [Evidence IEA]" /GO_process="GO:0009089 - lysine biosynthetic process via diaminopimelate [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="diaminopimelate epimerase" /protein_id="WP_005769680.1" /translation="MKVNFTKMQGSGNDFVVIDATKTPFQLTTSQIQKMANRRFGVGF DQLLVIEPPKNNSVDFHFRIFNADGSEVGQCGNGARCIARFIRAHQLSDREELRVSTL NEVLELKIQPDGKVSVKMGVPRFEPTEIPFIASGVANFYDIAVDNQIVKLGVVNIGNP HAIIPVERINAEEVGKLGARLSVHECFPEGANVGFMQVIDPQNIRLRVYERGTGETLA CGSNACAAVAVGRRCGLLQERVVVSQPGGSLTIDWQGPLTPVTMTGPATTVFCGEWLD " gene complement(8771..8893) /gene="lptM" /locus_tag="OO627_RS06520" /gene_synonym="yifL" CDS complement(8771..8893) /gene="lptM" /locus_tag="OO627_RS06520" /gene_synonym="yifL" /inference="COORDINATES: protein motif:HMM:NF025012.5" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="LPS translocon maturation chaperone LptM" /protein_id="WP_005769682.1" /translation="MKKLLLIISLAFFIGGCGSKGALYLPPGAAQSQQSDSNES" gene complement(9130..9351) /locus_tag="OO627_RS06525" CDS complement(9130..9351) /locus_tag="OO627_RS06525" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_820947.1" /GO_function="GO:0003677 - DNA binding [Evidence IEA]" /GO_process="GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="response regulator transcription factor" /protein_id="WP_010958572.1" /translation="MIHTPGVYLTPRELEISLLLLRRQRYKAIAERLCLSSRSVEYYV QNIKLKFYCRNKKTLIAELEKLHLNLGKT" gene complement(9366..9521) /locus_tag="OO627_RS06530" CDS complement(9366..9521) /locus_tag="OO627_RS06530" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_820948.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_010958573.1" /translation="MRKRKMENQLDDYFEADIFNYCAVVMLETLGNEDPTQSEIDPKD QLPKILF" gene 9531..9626 /locus_tag="OO627_RS06535" CDS 9531..9626 /locus_tag="OO627_RS06535" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_820949.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_010958574.1" /translation="MTVELLKRYIKKIKIEFLTKRKIGIFLMDEN" gene 9623..10333 /locus_tag="OO627_RS06540" CDS 9623..10333 /locus_tag="OO627_RS06540" /EC_number="3.1.1.1" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_820950.2" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="phospholipase/carboxylesterase" /protein_id="WP_010958575.1" /translation="MKYNRITIFIELINMKPPLESITIPSAKPAVGSIIWLHGLGADG HDFADIVPRLGLPEDLHLRFLFPHAPIRPITVNANMQMRAWYDIYSLEDLSREDKNGI AQTQQSINQLIEQEILSGIPSDRIILAGFSQGGAMSLYTGLRYSKPLAGIIAVSTYLP LANHLPKESRAANRSIPIFIAHGSADPVLPIILGKQTAHLLKELGYAVEWHEYSMEHQ VCQEEIEAIGKWLTDRFS" gene complement(10313..10972) /gene="murU" /locus_tag="OO627_RS06545" CDS complement(10313..10972) /gene="murU" /locus_tag="OO627_RS06545" /EC_number="2.7.7.99" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_820951.1" /GO_function="GO:0016779 - nucleotidyltransferase activity [Evidence IEA]" /GO_process="GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU" /protein_id="WP_010958576.1" /translation="MKAMILAAGRGSRLKPLTDTLPKPLLSIGSENLIEHNVKVLKQA GIDEVIINISHHAEQIVGHLGDGKRYGVTIHYSYERDRLLGTGGGIFQALPLLGNEPF IVMSADIWSDFPFDRSFIEANNEAHLIFVENPNYHPIGDYALSDEGKVIFEGPKFTYG NIAKLHPKLFANCQPGTFPLSQLFNEAISRGIVSGELYRGKWFNVGTIEELERLRKAI G" gene complement(10978..12075) /locus_tag="OO627_RS06550" CDS complement(10978..12075) /locus_tag="OO627_RS06550" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_820952.2" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="aminoglycoside phosphotransferase family protein" /protein_id="WP_017253345.1" /translation="MIFPASLRNFFIRCWLGNGNLSGGIWLRGVPVERLCMMKECIEN HCQELESWLNTVLEQPFKRLSLLPGDASVRRYFRVYCKDITYVAMDASLQKESCEAFI AIAKAFYKLGLNVPVIYAEDKKQGFLLLTDFGDQLYAHALNKKTADELYRRAFNGLLR IQSCQKIEDYALPQFTADLYYQEMSWFRDWYLEKYLKTPLSLKEEETLENIFQLLIKT ALSQPQICAHRDYHSRNLMVVANHHQPGILDFQDALYGPVTYDLLSLLRDCYIDWPID QVETWVLAYQRQACQAGLLEEKDERQFLRWFDWIGLQRHLKCIGLFARLNERDGKPLY LQYIPRVMRYAWAVCERYSEFKGLKSLLEKR" gene 12057..14669 /locus_tag="OO627_RS06555" CDS 12057..14669 /locus_tag="OO627_RS06555" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_820953.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="LPS-assembly protein LptD" /protein_id="WP_124224287.1" /translation="MKQGKSFIFYCLVLLLCGFQQLSSAVTASIAKAIKTTDRKQRVS ETLPTGLSYRRFYQHIAHLLGWVPAPDLVCRGYFKEPLILTEHPHPGPATKEPAIVTA KGPSMVTAQGVSILRKDVVVTQPGRIVEADKAYIYRDSKTGHVTKIILIGHVRLHEAD KRIVADKGTLTLYPKTAILMNAAYHIYNGEPYFYKFKYPFDAWGIAKHAVRDASNVIT LRHATYSTCKPTAPAWSMSATTLVLNRNTHRGEAYNMLLHIGRVPIFYFPYFNFPIDN YRKTGFLIPYAGHSSSSGWFFALPFYWNMAPNYDLTLTPEFMSERGLNLQSLFRFLCT KSSGTIYLNYLPNDKVFQQFRETTLSKFPPSVLAEHPVFIPYVDKLKKMKNQRAFFSM NETTLFNSEWSSRVILNYVTDPYFFQDLGGQLGGSSLANQLLNQIDLQYNGLHWQFMG MLQAYQTLHLISQWTTPALDQYSRLPDFNIVGYYPDIARHVDFNFNAEAVNFDYRSDF VPDKPRGQRFHMRPGISFPFYFASGYIIPQLWADATAYNITHFQPGQAHTSSRLLPIF DIDSGLYFDRNFHLGHRSFIQTLEPRFFYLYVPYQNQDRFPNFDTVLLPFSFEQLFAL NQFTGNDRLQNANQASFALTSQVLDAQNGSPILTANVGFIYYLENQRVCLTPGCTPSN YHYSPIIGELTFYPFPYWSFTGSLAWDPNLGQTNNTSVELAYNNGGKKADIRYLFVHG NEDSIVTPTTLIVPGNAYSQNTNHVISSGAWPLLKKWNAVGYWDYNITERRTDVYSIG VQYNTCCWALSFSIRRTYAGLKVDPNGALQRQYDTAYGFELQLKGLGNLGTAPISTVT VLDAMNNGVSNDVR" gene 14675..15640 /locus_tag="OO627_RS06560" CDS 14675..15640 /locus_tag="OO627_RS06560" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_820955.2" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="SurA N-terminal domain-containing protein" /protein_id="WP_012220050.1" /translation="MWKKILTSMVIILSVTSISAFAQSTLPAPNATHEQSLDQIVAVV NDEIITQSELNHALTAAKQQFMQRQISLPDQKTFKKQVLDQLIYQKLQLQVAKHNQIK VTNNEINAAVARISQANHLSQTALKQKLTQEGISYKEFRSQLQKQLIISKLQHQALQD TISINKSDIAAFQKQHAGQIASKEYHIATILIPLPASATQAQINHAKGKAALILKQLQ KGSSFETAMKMHPGSADLGWRSAKELPQVFVKTVLKMKPNEVTGPIQAPNGFHIIKLL DKEAKNTVSDQQIQRIVYQQKVEKALQKWLTQLRSSAYIHIYADS" gene 15640..16563 /gene="pdxA" /locus_tag="OO627_RS06565" CDS 15640..16563 /gene="pdxA" /locus_tag="OO627_RS06565" /EC_number="1.1.1.262" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_820956.1" /GO_function="GO:0050570 - 4-hydroxythreonine-4-phosphate dehydrogenase activity [Evidence IEA]" /GO_process="GO:0008615 - pyridoxine biosynthetic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="4-hydroxythreonine-4-phosphate dehydrogenase PdxA" /protein_id="WP_005769700.1" /translation="MKSIAITLGDPAGIGPDILIKLAQHKFSAPLCVIADRDLLANRA NRLSLTLPSSLVIQHVPLKKPCLIGKPDPANAEYVLETLRIAATGCQRNDYKAMVTGP VSKAVINEAGIAFTGHTEWLAKLAGVQRTVMLFVTNELKVALYTTHIPLADVPSSLAP STLKESLQILQKGLQKYFSIPNPRIIICGLNPHAGENGYLGKEEINVIEPVIKALNTE GFLLTGPLPADTAFTPRHSHHADAILALYHDQGLPVVKALGFGQAVNVTLGLPFLRTS VDHGTAFDLAGTDRADESSLLAAVNLAAALS" gene 16715..17491 /gene="rsmA" /locus_tag="OO627_RS06570" CDS 16715..17491 /gene="rsmA" /locus_tag="OO627_RS06570" /EC_number="2.1.1.182" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_820957.2" /GO_function="GO:0000179 - rRNA (adenine-N6,N6-)-dimethyltransferase activity [Evidence IEA]" /GO_process="GO:0006364 - rRNA processing [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA" /protein_id="WP_017253343.1" /translation="MKKMPMRKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRG ALTDYLLTECDNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSSVKTDKPLR VVGNLPYNISTPLLFHLFSQIHCIEDMHFMLQKEVVRRITAEVGSHDYGRLSVMAQYF CDNTYLFTVSPQAFTPPPRVESAIIRLIPHHNFTPVAKNLDQLSHVVKEAFSYRRKTV GNALKKLINPSQWPLLEINPQLRPQELTVEDFVKISNILN" gene 17498..>17581 /locus_tag="OO627_RS06575" /pseudo CDS 17498..>17581 /locus_tag="OO627_RS06575" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_819535.1" /note="incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="hypothetical protein" gene 17604..18038 /locus_tag="OO627_RS06580" CDS 17604..18038 /locus_tag="OO627_RS06580" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_820958.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="universal stress protein" /protein_id="WP_010958580.1" /translation="MHYKHILAAIDLSPRSQEVIDRAAEVAASNNATLDVVHVIEHSP VAYGGEFSIPINVNLEQTIESEARKALTELCHTVKVPSERQHTLSGVVKHMVIELAEK LNIDLIVVGTHGHHGLDKLLGSRANAILHVATCDVLAVWMKE" gene 18207..18581 /locus_tag="OO627_RS06585" CDS 18207..18581 /locus_tag="OO627_RS06585" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_820959.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_005769706.1" /translation="MKKLILSATIATSLVALPFSGIAFNNPFSQLVRNAINPQYQDCG KTTDPGFCHCFTDALLTGCQHAPIHPKCTPDAIKKEIDAMRAQGKTYEQICRLEHSPV DPTVCAEDLQYWHDNYSTCNKP" gene 18626..19324 /locus_tag="OO627_RS06590" CDS 18626..19324 /locus_tag="OO627_RS06590" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_820960.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="outer membrane beta-barrel protein" /protein_id="WP_010958581.1" /translation="MLFEIKIYMYRKIISQFISLLFLLLINFASKANSIQTYDFPSIW RTHPFYIGLSLGYGSTDWSQLVAKGTPMEIPLLAVSTPISAGDRGFLYGFVAGYELQP HFAIELNYTRFPNTTVVFDPDFYTIKPIVSMRSFTYAYNLVGKFMAQLGESGFRGFAN AGASFTHRNDLLVKGAHICPTFGVGINYVFIKRIMLEMGFQYYAGYGKAVINPGVNYV PFLYALTLKLAYRF" gene 19388..20329 /locus_tag="OO627_RS06595" CDS 19388..20329 /locus_tag="OO627_RS06595" /EC_number="3.4.21.-" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_820961.1" /GO_function="GO:0008236 - serine-type peptidase activity [Evidence IEA]" /GO_process="GO:0006508 - proteolysis [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="S49 family peptidase" /protein_id="WP_005769709.1" /translation="MNDETVENTLVKAILDDRRAERRWRNVRFAGWMFILLLFAILIF APSSSELEARRGDGAYVSLVRMNGTIMSNTTFSALRVVPELRKAFADKNSKGVVLLIN SPGGSPVQASIIRDKIIELKKQYHKKVVVVGEDELASGAYLVSTGADKIYVNNDTLTG SIGVIMGGFGFVDTLKKVGVTRRLFVAGDHKDRLDPFQPVKPEDVEKINKVLAQVHQN FIDQVIQGRGNRLHGDRQEIFSGDFWTGKEAAQLGVVDGTANLWTVLEREFGVKDYKD YTTRVSFLQALFHNTATELYFHLTNETSPLREQMQVD" gene 20342..21217 /locus_tag="OO627_RS06600" CDS 20342..21217 /locus_tag="OO627_RS06600" /EC_number="3.6.1.41" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_820962.1" /GO_function="GO:0008803 - bis(5'-nucleosyl)-tetraphosphatase (symmetrical) activity [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="symmetrical bis(5'-nucleosyl)-tetraphosphatase" /protein_id="WP_017253342.1" /translation="MDARAINSREKADLKYPRNTYIIGDVQGCYRELQELLELIQFDS TKDRLGFVGDLVNRGPNSLEVLRFLKSLSSPLIVLGNHDLYLLILGYGLMPEDSYEHT LHAVLQAPDKLELLEWLRHSPLIRYEKSLSAVLVHAGLPPQWNIKESILHAEEISTAL KGPHYLAFLKNLFGNEPSQWKEDLEGQDRVRYICNAFTRMRFCDAKGHLDLESEGKTN QAPSRFRPWFEWRNPQEDNVDIVFGHWAALNGQSSAPHTHALDTGCAWGYKLTAINLK TKERFSVPCQSALRM" gene <21220..>21357 /locus_tag="OO627_RS12700" /pseudo CDS <21220..>21357 /locus_tag="OO627_RS12700" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_820967.1" /GO_process="GO:0008219 - cell death [Evidence IEA]" /note="frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="Txe/YoeB family addiction module toxin" gene 21366..>21497 /locus_tag="OO627_RS06610" /pseudo CDS 21366..>21497 /locus_tag="OO627_RS06610" /inference="COORDINATES: similar to AA sequence:RefSeq:YP_002333045.1" /note="incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="hypothetical protein" gene 21613..21867 /locus_tag="OO627_RS06615" CDS 21613..21867 /locus_tag="OO627_RS06615" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_820966.1" /GO_component="GO:0110001 - toxin-antitoxin complex [Evidence IEA]" /GO_function="GO:0003677 - DNA binding [Evidence IEA]; GO:0097351 - toxin sequestering activity [Evidence IEA]" /GO_process="GO:0045927 - positive regulation of growth [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="type II toxin-antitoxin system Phd/YefM family antitoxin" /protein_id="WP_005769716.1" /translation="MNVVTFSELRAQLKKILDLSADQHEPVVVKRPNKETMVILSLRD FEALKETAYLLSNEANAARLRQSIRSLKQGKAQKKKLMED" gene 21867..22142 /locus_tag="OO627_RS06620" CDS 21867..22142 /locus_tag="OO627_RS06620" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_820967.1" /GO_process="GO:0008219 - cell death [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="Txe/YoeB family addiction module toxin" /protein_id="WP_005769718.1" /translation="MQISFTPEAWEDYLYWQKFDKKMLRRINELIKDAMHEPFSGKGK PEPLKFELQGYWSRRLDQEHRLVYKVLDDSLMIIAARFHYNRLNSKN" gene complement(22115..22600) /locus_tag="OO627_RS06625" CDS complement(22115..22600) /locus_tag="OO627_RS06625" /EC_number="1.5.1.3" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_820968.1" /GO_function="GO:0004146 - dihydrofolate reductase activity [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="dihydrofolate reductase" /protein_id="WP_005769725.1" /translation="MIITLIAAMDKNRLIGRNNELPWHLPADLAHFKSITLGKPIVMG RRTFDSIGKPLPHRRNIVITQQKNLIIEGCDIFYSLDDALSALTKEPEVIIIGGARIF KEALPKADKMILTIINHSFEGDVYFPEWNDKEWKITSQIKHERDEKNPYPFQFLELRR L" gene complement(22597..23400) /locus_tag="OO627_RS06630" CDS complement(22597..23400) /locus_tag="OO627_RS06630" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_820969.2" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="epoxyqueuosine reductase QueH" /protein_id="WP_017253341.1" /translation="MNKGCDLCMAGTIYQSASSSRLGRESAVFFTTPRTVLREKKGLI MINKNQTKLKLPNGADRLLLHSCCAPCAGAIMEKLAASGIHFTIFFYNPNIHPEKEYL IRKNENIRFAEKLGVPFVDADYDRDNWLARAKGMEYEPERGARCTMCFDMRFELTALY AYENGFPIISSTLGISRWKNMDQINECGVRAAHKYPNMFYWTLNWRKQGGSQRMIELS KEENFYQQEYCGCVYSLRDTNRWRLKNGRSRIEIGLKFYGKNEPSKISQ" gene 23596..23883 /locus_tag="OO627_RS06635" CDS 23596..23883 /locus_tag="OO627_RS06635" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_820970.2" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="acylphosphatase" /protein_id="WP_005769730.1" /translation="MTQKEKNETCIHATVSGKVQGVFFRESVRKKAEELQLTGWVKNL SHGDVELVACGERDSIMILTEWLWEGPPQAAVSNVNWEEIVVEDYSDFRVR" gene complement(23859..24413) /gene="gmhB" /locus_tag="OO627_RS06640" CDS complement(23859..24413) /gene="gmhB" /locus_tag="OO627_RS06640" /EC_number="3.1.3.82" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_820971.1" /GO_function="GO:0016791 - phosphatase activity [Evidence IEA]" /GO_process="GO:0005975 - carbohydrate metabolic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase" /protein_id="WP_005769732.1" /translation="MLDEEKLIILDRDGVINYDSENYIKNPDEWIPIPGSLSAIARLN EVGYQVVIATNQSGVDRGYYSLDMLEAIHEKMRRELAKAGGRVAGIYFCPHAPQANCP CRKPKPGLLHLIAEDFPQKLKGTALVGDSLRDIQAARAAGCLPVLVKTGNGEKTIANG EGLEDVPIFEDLSDFVNHLTRKSL" gene complement(24426..25370) /gene="fmt" /locus_tag="OO627_RS06645" CDS complement(24426..25370) /gene="fmt" /locus_tag="OO627_RS06645" /EC_number="2.1.2.9" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_820972.1" /GO_component="GO:0005737 - cytoplasm [Evidence IEA]" /GO_function="GO:0004479 - methionyl-tRNA formyltransferase activity [Evidence IEA]" /GO_process="GO:0071951 - conversion of methionyl-tRNA to N-formyl-methionyl-tRNA [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="methionyl-tRNA formyltransferase" /protein_id="WP_010958586.1" /translation="MSLKIVFAGTPQFAVPTLRALIDSSHRVLAVYTQPDRPSGRGQK IMESPVKEIARQNEIPIIQPFSLRDEVEQEKLIAMNADVMVVVAYGLILPKKALNAFR LGCVNVHASLLPRWRGAAPIQRAILAGDRETGISIMQMNEGLDTGDVLAKSACVISSE DTAADLHDRLSLIGADLLLESLAKLEKGDIKLEKQDEASATYASKIQKQEALIDWRKS AVEIARQVRAFNPTPIAFTYFEGQPMRIWRATVVDEKTDFEPGVLVDADKKGISIAAG SGILRLHQLQLPGKRVCSAGDFINAHGDKLIPGKTVFG" gene 25537..25809 /locus_tag="OO627_RS06650" CDS 25537..25809 /locus_tag="OO627_RS06650" /inference="COORDINATES: ab initio prediction:GeneMarkS-2+" /note="Derived by automated computational analysis using gene prediction method: GeneMarkS-2+." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_010957319.1" /translation="MDPPLLSTISFDEKKAVAFVYPASRFKLATIGALMNYARLMLIG LSASQSHRMNQLNQPQVLPYFHQPSLFRTRLVCLLLLILFFTHGGV" gene complement(25806..>26256) /locus_tag="OO627_RS06655" /pseudo CDS complement(25806..>26256) /locus_tag="OO627_RS06655" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_819062.3" /GO_function="GO:0004803 - transposase activity [Evidence IEA]" /GO_process="GO:0006313 - DNA transposition [Evidence IEA]" /note="incomplete; too short partial abutting assembly gap; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=2 /transl_table=11 /product="IS110-like element IS1111A family transposase" CONTIG join(JAOXEE010000028.1:1..26256) //
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