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Coxiella burnetii strain CB213 NODE_28_length_26256_cov_524.552_ID_55, whole genome shotgun sequence

NCBI Reference Sequence: NZ_JAOXEE010000028.1

FASTA Graphics 

LOCUS       NZ_JAOXEE010000028     26256 bp    DNA     linear   CON 21-DEC-2024
DEFINITION  Coxiella burnetii strain CB213
            NODE_28_length_26256_cov_524.552_ID_55, whole genome shotgun
            sequence.
ACCESSION   NZ_JAOXEE010000028 NZ_JAOXEE010000000
VERSION     NZ_JAOXEE010000028.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30428928
            Assembly: GCF_025990375.1
KEYWORDS    WGS; RefSeq.
SOURCE      Coxiella burnetii
  ORGANISM  Coxiella burnetii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Legionellales; Coxiellaceae; Coxiella.
REFERENCE   1  (bases 1 to 26256)
  AUTHORS   Abou-Abdallah,R.
  TITLE     Pangenomic analysis of C. burnetii unveils new traits in genome
            architecture
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 26256)
  AUTHORS   Abou-Abdallah,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-AUG-2022) VITROME, IHU Mediterranee Infection, 19-21
            Boulevard Jean Moulin, Marseille 13005, France
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOXEE010000028.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1126.849985x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_025990375.1-RS_2024_12_21
            Annotation Date                   :: 12/21/2024 04:05:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,415
            CDSs (total)                      :: 2,366
            Genes (coding)                    :: 2,097
            CDSs (with protein)               :: 2,097
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 42
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 269
            CDSs (without protein)            :: 269
            Pseudo Genes (ambiguous residues) :: 0 of 269
            Pseudo Genes (frameshifted)       :: 131 of 269
            Pseudo Genes (incomplete)         :: 144 of 269
            Pseudo Genes (internal stop)      :: 27 of 269
            Pseudo Genes (multiple problems)  :: 33 of 269
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26256
                     /organism="Coxiella burnetii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="NODE_28_length_26256_cov_524.552_ID_55"
                     /strain="CB213"
                     /host="Homo sapiens"
                     /db_xref="taxon:777"
                     /geo_loc_name="France"
                     /collection_date="2016"
     gene            complement(<1..400)
                     /locus_tag="OO627_RS06475"
     CDS             complement(<1..400)
                     /locus_tag="OO627_RS06475"
                     /inference="COORDINATES: protein motif:HMM:NF013698.5"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0004803 - transposase activity [Evidence IEA]"
                     /GO_process="GO:0006313 - DNA transposition [Evidence
                     IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="WP_409241319.1"
                     /translation="MDPPLKDGVIMRQHRISIFKKRRRSMKDIKILGVDIAKDVFQLC
                     GIDEWGKVIYTRRVKRAQYVSTVASLKVGCVVMEACGGANHWYRTFMGMGIPTQLISP
                     QHVKPYVKSNKNDRNDAQAIAEAASRASMRF"
     gene            495..2606
                     /locus_tag="OO627_RS06480"
                     /pseudo
     CDS             495..2606
                     /locus_tag="OO627_RS06480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011997397.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="CbuK_2014 family Dot/Icm T4SS effector"
     gene            complement(2577..3410)
                     /gene="prmC"
                     /locus_tag="OO627_RS06485"
     CDS             complement(2577..3410)
                     /gene="prmC"
                     /locus_tag="OO627_RS06485"
                     /EC_number="2.1.1.297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_820939.1"
                     /GO_function="GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /GO_process="GO:0018364 - peptidyl-glutamine methylation
                     [Evidence IEA]; GO:0006412 - translation [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="WP_010958568.1"
                     /translation="MLSIKEATKNISQQLTTVSKTPRLDAELLLECVLKKSRADLFAY
                     PEIQLNSSQQKTLSAYVKRRLKGEPIAYILGQKEFWSLNLKVTPDVLIPRPETEMLVE
                     WILKNLPKDEKLRIADLGTGSGAVALAIAVERPHWTIDATDNSQAALKIAEINAKQHE
                     IKNCNFYHGEWCQALPRRDYHAIVGNPPYIPDKDQHLQQLKHEPREALAAGSDGLSAI
                     KIIIHEAKSYLVNGGWLLLEHGYDQAEKIMTLMQADGYREITDRRDLAGLSRMMVARR
                     G"
     gene            complement(3413..4498)
                     /gene="prfA"
                     /locus_tag="OO627_RS06490"
     CDS             complement(3413..4498)
                     /gene="prfA"
                     /locus_tag="OO627_RS06490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_820940.1"
                     /GO_function="GO:0003747 - translation release factor
                     activity [Evidence IEA]"
                     /GO_process="GO:0006415 - translational termination
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="WP_005772919.1"
                     /translation="MKPSLIEKLKTLTYRYSEIGGLLSDSTVINDQDRYRELGKEYAQ
                     LEPIVKCFQQFQQNEKAIESAEEMQQEKDPELRKLAEEELEQLTLKKEELEDQLKLLL
                     VPKDPNDERNVFLEIRAGTGGNEAAIFAGDLFRMYARYAETKGWRVNIVSAHEGEHGG
                     FKEVIARVIGEGVYSQLKFESGAHRVQRVPVTESQGRIHTSACTVAIMPEVDEIDQIK
                     INPAELRIDTFRASGAGGQHVNRTDSAIRITHLPTGVVVECQDERSQHKNKARAMSLL
                     QSKLLAAERAKQDQEQAAKRKSLVGSGDRSERIRTYNFPQGRVTDHRINLTLYQLDEV
                     IEGDLDPVIGPLIRELQAEQLAELSGE"
     gene            complement(4495..5736)
                     /gene="hemA"
                     /locus_tag="OO627_RS06495"
     CDS             complement(4495..5736)
                     /gene="hemA"
                     /locus_tag="OO627_RS06495"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_820941.1"
                     /GO_function="GO:0008883 - glutamyl-tRNA reductase
                     activity [Evidence IEA]; GO:0050661 - NADP binding
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="WP_005769672.1"
                     /translation="MPLLVCGINHQSAPLTVREKLVFTPERTPLALQSLLAEKAVNEA
                     LLLSTCNRTEIYTTVDEAATILRWLSKQPQLSGIDLRSFCYARRDIEMVRHVMRVGSG
                     LDSMVLGEPQILGQMKQAYLLARRIGAVGSELGRLFPAVFAATKRIRSETAIGANPVS
                     IAYAVVQLAKRIFSHLNQCQILLIGAGETIELVFSHLYNQGARHFFIANRTLTRAKQI
                     AEPYHAQAIRLSDIPTYLPKVDIVISATMSQLPLVGKGAVESALRQRKRRPLFMADLA
                     LPRDIEPETAQLEDVYLYNIDDLQTLIAQNRQTREAAAKQAEAMVEMQAIHYMRQLQV
                     HKAGDTIRRFRERVEMLRDQELEKALAHFQRTNDPKAVIAHFAHNLTNKILHQPTTKL
                     RQAAYEDQVQLLLSAKELFDL"
     gene            5813..7042
                     /locus_tag="OO627_RS06500"
     CDS             5813..7042
                     /locus_tag="OO627_RS06500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_820942.1"
                     /GO_function="GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /GO_process="GO:0055085 - transmembrane transport
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug effflux MFS transporter"
                     /protein_id="WP_040953446.1"
                     /translation="MHKFRLSGRKTTIRYKQHMKKNLIVILTSVFVTVGQFAMALYLP
                     ALPALTTYFHTFPGVIQLSLTLFLIAFGFSQLFYGSLSDCYGRKPLLLIGLVIVMIGF
                     LIAVFARHLSLLLIARVVQGLGAGSVSVLARAVIRDRFEGEKLVQALSLLIMAASLAP
                     MIAPFIGGHIQHRLGWHSIFIFLFFYSGLILLSIFFLLPETKKTESVPFKMGALLNNY
                     KLLLRHPIYIKYVVCIIMAYACQILYLSISPFIFQNGLKLNAAQYSTIITLPAIGYFV
                     GNFLSTRLIRFFDSNHLVFVGALIVVMAGIALALEAAFNGLSAFSVITPIIFCVIGIG
                     LIYPNVISGSLSPFPQMAGTAAALSGAIQMAGTSSIAGVTNALHVVSVLGLGISFLLC
                     GAVVLLMIFRIMRTSVQ"
     gene            complement(7020..7373)
                     /locus_tag="OO627_RS06505"
     CDS             complement(7020..7373)
                     /locus_tag="OO627_RS06505"
                     /EC_number="4.1.2.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_820943.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="WP_012220054.1"
                     /translation="MDKLFIRNLRVPAQVGILSHEKAEKQILSIDIVYHINAKQAALS
                     DEILHTIDYASVRENLIHFLNDHRFNLIETLAERCADFLLTRFKMSWLQLSITKPSIF
                     DDADGAGIIIERTSS"
     gene            complement(7366..7809)
                     /gene="dksA"
                     /locus_tag="OO627_RS06510"
     CDS             complement(7366..7809)
                     /gene="dksA"
                     /locus_tag="OO627_RS06510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_820944.1"
                     /GO_function="GO:0019899 - enzyme binding [Evidence IEA];
                     GO:0008270 - zinc ion binding [Evidence IEA]"
                     /GO_process="GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-binding protein DksA"
                     /protein_id="WP_005769678.1"
                     /translation="MAVSKAMKTKTTDLGFSPYKLTRGEEYMNEKQQEHFRKILSEWK
                     KQLMEEVDSTVVHLKEEASVYADPLDRASQEEGFNLELRTRDRERKLIKKIEQAADAL
                     DNGDYGFCEDCGAEIGIRRLEARPTATKCIDCKTFEEIREKQSGG"
     gene            complement(7951..8781)
                     /gene="dapF"
                     /locus_tag="OO627_RS06515"
     CDS             complement(7951..8781)
                     /gene="dapF"
                     /locus_tag="OO627_RS06515"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_820945.1"
                     /GO_function="GO:0008837 - diaminopimelate epimerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="WP_005769680.1"
                     /translation="MKVNFTKMQGSGNDFVVIDATKTPFQLTTSQIQKMANRRFGVGF
                     DQLLVIEPPKNNSVDFHFRIFNADGSEVGQCGNGARCIARFIRAHQLSDREELRVSTL
                     NEVLELKIQPDGKVSVKMGVPRFEPTEIPFIASGVANFYDIAVDNQIVKLGVVNIGNP
                     HAIIPVERINAEEVGKLGARLSVHECFPEGANVGFMQVIDPQNIRLRVYERGTGETLA
                     CGSNACAAVAVGRRCGLLQERVVVSQPGGSLTIDWQGPLTPVTMTGPATTVFCGEWLD
                     "
     gene            complement(8771..8893)
                     /gene="lptM"
                     /locus_tag="OO627_RS06520"
                     /gene_synonym="yifL"
     CDS             complement(8771..8893)
                     /gene="lptM"
                     /locus_tag="OO627_RS06520"
                     /gene_synonym="yifL"
                     /inference="COORDINATES: protein motif:HMM:NF025012.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS translocon maturation chaperone LptM"
                     /protein_id="WP_005769682.1"
                     /translation="MKKLLLIISLAFFIGGCGSKGALYLPPGAAQSQQSDSNES"
     gene            complement(9130..9351)
                     /locus_tag="OO627_RS06525"
     CDS             complement(9130..9351)
                     /locus_tag="OO627_RS06525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_820947.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]; GO:0006355 - regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="WP_010958572.1"
                     /translation="MIHTPGVYLTPRELEISLLLLRRQRYKAIAERLCLSSRSVEYYV
                     QNIKLKFYCRNKKTLIAELEKLHLNLGKT"
     gene            complement(9366..9521)
                     /locus_tag="OO627_RS06530"
     CDS             complement(9366..9521)
                     /locus_tag="OO627_RS06530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_820948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_010958573.1"
                     /translation="MRKRKMENQLDDYFEADIFNYCAVVMLETLGNEDPTQSEIDPKD
                     QLPKILF"
     gene            9531..9626
                     /locus_tag="OO627_RS06535"
     CDS             9531..9626
                     /locus_tag="OO627_RS06535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_820949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_010958574.1"
                     /translation="MTVELLKRYIKKIKIEFLTKRKIGIFLMDEN"
     gene            9623..10333
                     /locus_tag="OO627_RS06540"
     CDS             9623..10333
                     /locus_tag="OO627_RS06540"
                     /EC_number="3.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_820950.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase/carboxylesterase"
                     /protein_id="WP_010958575.1"
                     /translation="MKYNRITIFIELINMKPPLESITIPSAKPAVGSIIWLHGLGADG
                     HDFADIVPRLGLPEDLHLRFLFPHAPIRPITVNANMQMRAWYDIYSLEDLSREDKNGI
                     AQTQQSINQLIEQEILSGIPSDRIILAGFSQGGAMSLYTGLRYSKPLAGIIAVSTYLP
                     LANHLPKESRAANRSIPIFIAHGSADPVLPIILGKQTAHLLKELGYAVEWHEYSMEHQ
                     VCQEEIEAIGKWLTDRFS"
     gene            complement(10313..10972)
                     /gene="murU"
                     /locus_tag="OO627_RS06545"
     CDS             complement(10313..10972)
                     /gene="murU"
                     /locus_tag="OO627_RS06545"
                     /EC_number="2.7.7.99"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_820951.1"
                     /GO_function="GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA]"
                     /GO_process="GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramate alpha-1-phosphate
                     uridylyltransferase MurU"
                     /protein_id="WP_010958576.1"
                     /translation="MKAMILAAGRGSRLKPLTDTLPKPLLSIGSENLIEHNVKVLKQA
                     GIDEVIINISHHAEQIVGHLGDGKRYGVTIHYSYERDRLLGTGGGIFQALPLLGNEPF
                     IVMSADIWSDFPFDRSFIEANNEAHLIFVENPNYHPIGDYALSDEGKVIFEGPKFTYG
                     NIAKLHPKLFANCQPGTFPLSQLFNEAISRGIVSGELYRGKWFNVGTIEELERLRKAI
                     G"
     gene            complement(10978..12075)
                     /locus_tag="OO627_RS06550"
     CDS             complement(10978..12075)
                     /locus_tag="OO627_RS06550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_820952.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside phosphotransferase family
                     protein"
                     /protein_id="WP_017253345.1"
                     /translation="MIFPASLRNFFIRCWLGNGNLSGGIWLRGVPVERLCMMKECIEN
                     HCQELESWLNTVLEQPFKRLSLLPGDASVRRYFRVYCKDITYVAMDASLQKESCEAFI
                     AIAKAFYKLGLNVPVIYAEDKKQGFLLLTDFGDQLYAHALNKKTADELYRRAFNGLLR
                     IQSCQKIEDYALPQFTADLYYQEMSWFRDWYLEKYLKTPLSLKEEETLENIFQLLIKT
                     ALSQPQICAHRDYHSRNLMVVANHHQPGILDFQDALYGPVTYDLLSLLRDCYIDWPID
                     QVETWVLAYQRQACQAGLLEEKDERQFLRWFDWIGLQRHLKCIGLFARLNERDGKPLY
                     LQYIPRVMRYAWAVCERYSEFKGLKSLLEKR"
     gene            12057..14669
                     /locus_tag="OO627_RS06555"
     CDS             12057..14669
                     /locus_tag="OO627_RS06555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_820953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS-assembly protein LptD"
                     /protein_id="WP_124224287.1"
                     /translation="MKQGKSFIFYCLVLLLCGFQQLSSAVTASIAKAIKTTDRKQRVS
                     ETLPTGLSYRRFYQHIAHLLGWVPAPDLVCRGYFKEPLILTEHPHPGPATKEPAIVTA
                     KGPSMVTAQGVSILRKDVVVTQPGRIVEADKAYIYRDSKTGHVTKIILIGHVRLHEAD
                     KRIVADKGTLTLYPKTAILMNAAYHIYNGEPYFYKFKYPFDAWGIAKHAVRDASNVIT
                     LRHATYSTCKPTAPAWSMSATTLVLNRNTHRGEAYNMLLHIGRVPIFYFPYFNFPIDN
                     YRKTGFLIPYAGHSSSSGWFFALPFYWNMAPNYDLTLTPEFMSERGLNLQSLFRFLCT
                     KSSGTIYLNYLPNDKVFQQFRETTLSKFPPSVLAEHPVFIPYVDKLKKMKNQRAFFSM
                     NETTLFNSEWSSRVILNYVTDPYFFQDLGGQLGGSSLANQLLNQIDLQYNGLHWQFMG
                     MLQAYQTLHLISQWTTPALDQYSRLPDFNIVGYYPDIARHVDFNFNAEAVNFDYRSDF
                     VPDKPRGQRFHMRPGISFPFYFASGYIIPQLWADATAYNITHFQPGQAHTSSRLLPIF
                     DIDSGLYFDRNFHLGHRSFIQTLEPRFFYLYVPYQNQDRFPNFDTVLLPFSFEQLFAL
                     NQFTGNDRLQNANQASFALTSQVLDAQNGSPILTANVGFIYYLENQRVCLTPGCTPSN
                     YHYSPIIGELTFYPFPYWSFTGSLAWDPNLGQTNNTSVELAYNNGGKKADIRYLFVHG
                     NEDSIVTPTTLIVPGNAYSQNTNHVISSGAWPLLKKWNAVGYWDYNITERRTDVYSIG
                     VQYNTCCWALSFSIRRTYAGLKVDPNGALQRQYDTAYGFELQLKGLGNLGTAPISTVT
                     VLDAMNNGVSNDVR"
     gene            14675..15640
                     /locus_tag="OO627_RS06560"
     CDS             14675..15640
                     /locus_tag="OO627_RS06560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_820955.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SurA N-terminal domain-containing protein"
                     /protein_id="WP_012220050.1"
                     /translation="MWKKILTSMVIILSVTSISAFAQSTLPAPNATHEQSLDQIVAVV
                     NDEIITQSELNHALTAAKQQFMQRQISLPDQKTFKKQVLDQLIYQKLQLQVAKHNQIK
                     VTNNEINAAVARISQANHLSQTALKQKLTQEGISYKEFRSQLQKQLIISKLQHQALQD
                     TISINKSDIAAFQKQHAGQIASKEYHIATILIPLPASATQAQINHAKGKAALILKQLQ
                     KGSSFETAMKMHPGSADLGWRSAKELPQVFVKTVLKMKPNEVTGPIQAPNGFHIIKLL
                     DKEAKNTVSDQQIQRIVYQQKVEKALQKWLTQLRSSAYIHIYADS"
     gene            15640..16563
                     /gene="pdxA"
                     /locus_tag="OO627_RS06565"
     CDS             15640..16563
                     /gene="pdxA"
                     /locus_tag="OO627_RS06565"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_820956.1"
                     /GO_function="GO:0050570 - 4-hydroxythreonine-4-phosphate
                     dehydrogenase activity [Evidence IEA]"
                     /GO_process="GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase
                     PdxA"
                     /protein_id="WP_005769700.1"
                     /translation="MKSIAITLGDPAGIGPDILIKLAQHKFSAPLCVIADRDLLANRA
                     NRLSLTLPSSLVIQHVPLKKPCLIGKPDPANAEYVLETLRIAATGCQRNDYKAMVTGP
                     VSKAVINEAGIAFTGHTEWLAKLAGVQRTVMLFVTNELKVALYTTHIPLADVPSSLAP
                     STLKESLQILQKGLQKYFSIPNPRIIICGLNPHAGENGYLGKEEINVIEPVIKALNTE
                     GFLLTGPLPADTAFTPRHSHHADAILALYHDQGLPVVKALGFGQAVNVTLGLPFLRTS
                     VDHGTAFDLAGTDRADESSLLAAVNLAAALS"
     gene            16715..17491
                     /gene="rsmA"
                     /locus_tag="OO627_RS06570"
     CDS             16715..17491
                     /gene="rsmA"
                     /locus_tag="OO627_RS06570"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_820957.2"
                     /GO_function="GO:0000179 - rRNA
                     (adenine-N6,N6-)-dimethyltransferase activity [Evidence
                     IEA]"
                     /GO_process="GO:0006364 - rRNA processing [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="WP_017253343.1"
                     /translation="MKKMPMRKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRG
                     ALTDYLLTECDNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSSVKTDKPLR
                     VVGNLPYNISTPLLFHLFSQIHCIEDMHFMLQKEVVRRITAEVGSHDYGRLSVMAQYF
                     CDNTYLFTVSPQAFTPPPRVESAIIRLIPHHNFTPVAKNLDQLSHVVKEAFSYRRKTV
                     GNALKKLINPSQWPLLEINPQLRPQELTVEDFVKISNILN"
     gene            17498..>17581
                     /locus_tag="OO627_RS06575"
                     /pseudo
     CDS             17498..>17581
                     /locus_tag="OO627_RS06575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_819535.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            17604..18038
                     /locus_tag="OO627_RS06580"
     CDS             17604..18038
                     /locus_tag="OO627_RS06580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_820958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="WP_010958580.1"
                     /translation="MHYKHILAAIDLSPRSQEVIDRAAEVAASNNATLDVVHVIEHSP
                     VAYGGEFSIPINVNLEQTIESEARKALTELCHTVKVPSERQHTLSGVVKHMVIELAEK
                     LNIDLIVVGTHGHHGLDKLLGSRANAILHVATCDVLAVWMKE"
     gene            18207..18581
                     /locus_tag="OO627_RS06585"
     CDS             18207..18581
                     /locus_tag="OO627_RS06585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_820959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_005769706.1"
                     /translation="MKKLILSATIATSLVALPFSGIAFNNPFSQLVRNAINPQYQDCG
                     KTTDPGFCHCFTDALLTGCQHAPIHPKCTPDAIKKEIDAMRAQGKTYEQICRLEHSPV
                     DPTVCAEDLQYWHDNYSTCNKP"
     gene            18626..19324
                     /locus_tag="OO627_RS06590"
     CDS             18626..19324
                     /locus_tag="OO627_RS06590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_820960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="WP_010958581.1"
                     /translation="MLFEIKIYMYRKIISQFISLLFLLLINFASKANSIQTYDFPSIW
                     RTHPFYIGLSLGYGSTDWSQLVAKGTPMEIPLLAVSTPISAGDRGFLYGFVAGYELQP
                     HFAIELNYTRFPNTTVVFDPDFYTIKPIVSMRSFTYAYNLVGKFMAQLGESGFRGFAN
                     AGASFTHRNDLLVKGAHICPTFGVGINYVFIKRIMLEMGFQYYAGYGKAVINPGVNYV
                     PFLYALTLKLAYRF"
     gene            19388..20329
                     /locus_tag="OO627_RS06595"
     CDS             19388..20329
                     /locus_tag="OO627_RS06595"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_820961.1"
                     /GO_function="GO:0008236 - serine-type peptidase activity
                     [Evidence IEA]"
                     /GO_process="GO:0006508 - proteolysis [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S49 family peptidase"
                     /protein_id="WP_005769709.1"
                     /translation="MNDETVENTLVKAILDDRRAERRWRNVRFAGWMFILLLFAILIF
                     APSSSELEARRGDGAYVSLVRMNGTIMSNTTFSALRVVPELRKAFADKNSKGVVLLIN
                     SPGGSPVQASIIRDKIIELKKQYHKKVVVVGEDELASGAYLVSTGADKIYVNNDTLTG
                     SIGVIMGGFGFVDTLKKVGVTRRLFVAGDHKDRLDPFQPVKPEDVEKINKVLAQVHQN
                     FIDQVIQGRGNRLHGDRQEIFSGDFWTGKEAAQLGVVDGTANLWTVLEREFGVKDYKD
                     YTTRVSFLQALFHNTATELYFHLTNETSPLREQMQVD"
     gene            20342..21217
                     /locus_tag="OO627_RS06600"
     CDS             20342..21217
                     /locus_tag="OO627_RS06600"
                     /EC_number="3.6.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_820962.1"
                     /GO_function="GO:0008803 -
                     bis(5'-nucleosyl)-tetraphosphatase (symmetrical) activity
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="symmetrical bis(5'-nucleosyl)-tetraphosphatase"
                     /protein_id="WP_017253342.1"
                     /translation="MDARAINSREKADLKYPRNTYIIGDVQGCYRELQELLELIQFDS
                     TKDRLGFVGDLVNRGPNSLEVLRFLKSLSSPLIVLGNHDLYLLILGYGLMPEDSYEHT
                     LHAVLQAPDKLELLEWLRHSPLIRYEKSLSAVLVHAGLPPQWNIKESILHAEEISTAL
                     KGPHYLAFLKNLFGNEPSQWKEDLEGQDRVRYICNAFTRMRFCDAKGHLDLESEGKTN
                     QAPSRFRPWFEWRNPQEDNVDIVFGHWAALNGQSSAPHTHALDTGCAWGYKLTAINLK
                     TKERFSVPCQSALRM"
     gene            <21220..>21357
                     /locus_tag="OO627_RS12700"
                     /pseudo
     CDS             <21220..>21357
                     /locus_tag="OO627_RS12700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_820967.1"
                     /GO_process="GO:0008219 - cell death [Evidence IEA]"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Txe/YoeB family addiction module toxin"
     gene            21366..>21497
                     /locus_tag="OO627_RS06610"
                     /pseudo
     CDS             21366..>21497
                     /locus_tag="OO627_RS06610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002333045.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            21613..21867
                     /locus_tag="OO627_RS06615"
     CDS             21613..21867
                     /locus_tag="OO627_RS06615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_820966.1"
                     /GO_component="GO:0110001 - toxin-antitoxin complex
                     [Evidence IEA]"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0097351 - toxin sequestering activity [Evidence IEA]"
                     /GO_process="GO:0045927 - positive regulation of growth
                     [Evidence IEA]; GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system Phd/YefM family
                     antitoxin"
                     /protein_id="WP_005769716.1"
                     /translation="MNVVTFSELRAQLKKILDLSADQHEPVVVKRPNKETMVILSLRD
                     FEALKETAYLLSNEANAARLRQSIRSLKQGKAQKKKLMED"
     gene            21867..22142
                     /locus_tag="OO627_RS06620"
     CDS             21867..22142
                     /locus_tag="OO627_RS06620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_820967.1"
                     /GO_process="GO:0008219 - cell death [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Txe/YoeB family addiction module toxin"
                     /protein_id="WP_005769718.1"
                     /translation="MQISFTPEAWEDYLYWQKFDKKMLRRINELIKDAMHEPFSGKGK
                     PEPLKFELQGYWSRRLDQEHRLVYKVLDDSLMIIAARFHYNRLNSKN"
     gene            complement(22115..22600)
                     /locus_tag="OO627_RS06625"
     CDS             complement(22115..22600)
                     /locus_tag="OO627_RS06625"
                     /EC_number="1.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_820968.1"
                     /GO_function="GO:0004146 - dihydrofolate reductase
                     activity [Evidence IEA]; GO:0050661 - NADP binding
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase"
                     /protein_id="WP_005769725.1"
                     /translation="MIITLIAAMDKNRLIGRNNELPWHLPADLAHFKSITLGKPIVMG
                     RRTFDSIGKPLPHRRNIVITQQKNLIIEGCDIFYSLDDALSALTKEPEVIIIGGARIF
                     KEALPKADKMILTIINHSFEGDVYFPEWNDKEWKITSQIKHERDEKNPYPFQFLELRR
                     L"
     gene            complement(22597..23400)
                     /locus_tag="OO627_RS06630"
     CDS             complement(22597..23400)
                     /locus_tag="OO627_RS06630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_820969.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
                     /protein_id="WP_017253341.1"
                     /translation="MNKGCDLCMAGTIYQSASSSRLGRESAVFFTTPRTVLREKKGLI
                     MINKNQTKLKLPNGADRLLLHSCCAPCAGAIMEKLAASGIHFTIFFYNPNIHPEKEYL
                     IRKNENIRFAEKLGVPFVDADYDRDNWLARAKGMEYEPERGARCTMCFDMRFELTALY
                     AYENGFPIISSTLGISRWKNMDQINECGVRAAHKYPNMFYWTLNWRKQGGSQRMIELS
                     KEENFYQQEYCGCVYSLRDTNRWRLKNGRSRIEIGLKFYGKNEPSKISQ"
     gene            23596..23883
                     /locus_tag="OO627_RS06635"
     CDS             23596..23883
                     /locus_tag="OO627_RS06635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_820970.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylphosphatase"
                     /protein_id="WP_005769730.1"
                     /translation="MTQKEKNETCIHATVSGKVQGVFFRESVRKKAEELQLTGWVKNL
                     SHGDVELVACGERDSIMILTEWLWEGPPQAAVSNVNWEEIVVEDYSDFRVR"
     gene            complement(23859..24413)
                     /gene="gmhB"
                     /locus_tag="OO627_RS06640"
     CDS             complement(23859..24413)
                     /gene="gmhB"
                     /locus_tag="OO627_RS06640"
                     /EC_number="3.1.3.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_820971.1"
                     /GO_function="GO:0016791 - phosphatase activity [Evidence
                     IEA]"
                     /GO_process="GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose 1,7-bisphosphate
                     7-phosphatase"
                     /protein_id="WP_005769732.1"
                     /translation="MLDEEKLIILDRDGVINYDSENYIKNPDEWIPIPGSLSAIARLN
                     EVGYQVVIATNQSGVDRGYYSLDMLEAIHEKMRRELAKAGGRVAGIYFCPHAPQANCP
                     CRKPKPGLLHLIAEDFPQKLKGTALVGDSLRDIQAARAAGCLPVLVKTGNGEKTIANG
                     EGLEDVPIFEDLSDFVNHLTRKSL"
     gene            complement(24426..25370)
                     /gene="fmt"
                     /locus_tag="OO627_RS06645"
     CDS             complement(24426..25370)
                     /gene="fmt"
                     /locus_tag="OO627_RS06645"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_820972.1"
                     /GO_component="GO:0005737 - cytoplasm [Evidence IEA]"
                     /GO_function="GO:0004479 - methionyl-tRNA
                     formyltransferase activity [Evidence IEA]"
                     /GO_process="GO:0071951 - conversion of methionyl-tRNA to
                     N-formyl-methionyl-tRNA [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="WP_010958586.1"
                     /translation="MSLKIVFAGTPQFAVPTLRALIDSSHRVLAVYTQPDRPSGRGQK
                     IMESPVKEIARQNEIPIIQPFSLRDEVEQEKLIAMNADVMVVVAYGLILPKKALNAFR
                     LGCVNVHASLLPRWRGAAPIQRAILAGDRETGISIMQMNEGLDTGDVLAKSACVISSE
                     DTAADLHDRLSLIGADLLLESLAKLEKGDIKLEKQDEASATYASKIQKQEALIDWRKS
                     AVEIARQVRAFNPTPIAFTYFEGQPMRIWRATVVDEKTDFEPGVLVDADKKGISIAAG
                     SGILRLHQLQLPGKRVCSAGDFINAHGDKLIPGKTVFG"
     gene            25537..25809
                     /locus_tag="OO627_RS06650"
     CDS             25537..25809
                     /locus_tag="OO627_RS06650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_010957319.1"
                     /translation="MDPPLLSTISFDEKKAVAFVYPASRFKLATIGALMNYARLMLIG
                     LSASQSHRMNQLNQPQVLPYFHQPSLFRTRLVCLLLLILFFTHGGV"
     gene            complement(25806..>26256)
                     /locus_tag="OO627_RS06655"
                     /pseudo
     CDS             complement(25806..>26256)
                     /locus_tag="OO627_RS06655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_819062.3"
                     /GO_function="GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /GO_process="GO:0006313 - DNA transposition [Evidence
                     IEA]"
                     /note="incomplete; too short partial abutting assembly
                     gap; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="IS110-like element IS1111A family transposase"
CONTIG      join(JAOXEE010000028.1:1..26256)
//
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