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NCBI Reference Sequence: NZ_JAODYV010000315.1
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LOCUS NZ_JAODYV010000315 1792 bp DNA linear CON 12-MAY-2024 DEFINITION Stenotrophomonas maltophilia strain GD04156 315, whole genome shotgun sequence. ACCESSION NZ_JAODYV010000315 NZ_JAODYV010000000 VERSION NZ_JAODYV010000315.1 DBLINK BioProject: PRJNA224116 BioSample: SAMN30525612 Assembly: GCF_029834895.1 KEYWORDS WGS; RefSeq. SOURCE Stenotrophomonas maltophilia ORGANISM Stenotrophomonas maltophilia Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Lysobacterales; Lysobacteraceae; Stenotrophomonas; Stenotrophomonas maltophilia group. REFERENCE 1 (bases 1 to 1792) AUTHORS Diorio-Toth,L. TITLE Intensive care unit water sources are persistently colonized with multi-drug resistant bacteria and are the site of extensive horizontal gene transfer of antibiotic resistance genes JOURNAL Unpublished REFERENCE 2 (bases 1 to 1792) AUTHORS Diorio-Toth,L. TITLE Direct Submission JOURNAL Submitted (07-SEP-2022) Computational and Systems Biology, Washington University in St. Louis School of Medicine, 660 S Euclid Ave, St. Louis, MO 63110, USA COMMENT REFSEQ INFORMATION: The reference sequence is identical to JAODYV010000315.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.9 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 93.923x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_029834895.1-RS_2024_05_12 Annotation Date :: 05/12/2024 17:26:43 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,456 CDSs (total) :: 4,386 Genes (coding) :: 4,293 CDSs (with protein) :: 4,293 Genes (RNA) :: 70 tRNAs :: 66 ncRNAs :: 4 Pseudo Genes (total) :: 93 CDSs (without protein) :: 93 Pseudo Genes (ambiguous residues) :: 0 of 93 Pseudo Genes (frameshifted) :: 15 of 93 Pseudo Genes (incomplete) :: 79 of 93 Pseudo Genes (internal stop) :: 10 of 93 Pseudo Genes (multiple problems) :: 10 of 93 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1792 /organism="Stenotrophomonas maltophilia" /mol_type="genomic DNA" /strain="GD04156" /isolation_source="surface swab" /db_xref="taxon:40324" /geo_loc_name="Pakistan" /collection_date="2018-07-18" gene complement(<1..591) /gene="hisIE" /locus_tag="N7324_RS22190" /old_locus_tag="N7324_22200" CDS complement(<1..591) /gene="hisIE" /locus_tag="N7324_RS22190" /old_locus_tag="N7324_22200" /EC_number="3.5.4.19" /EC_number="3.6.1.31" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_005416333.1" /GO_function="GO:0004635 - phosphoribosyl-AMP cyclohydrolase activity [Evidence IEA]; GO:0004636 - phosphoribosyl-ATP diphosphatase activity [Evidence IEA]" /GO_process="GO:0000105 - histidine biosynthetic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE" /protein_id="WP_279731052.1" /translation="MSIEVRPSLDALQALDWAKGDGLLPAVVQDADTLQVLMLGYVSA ESLAATLAIGHMTFFSRSKQRLWTKGEQSGNVLVVQSISVDCDADTLLVMARPAGPTC HTGAESCFDQAPKDFLGGLGQLVAMREAQRPPGSYTTSLFEGGIRRIAQKVGEEGVET ALAAVAQDDEALLGEASDLLYHLLVLLRARRLSLDDA" gene complement(581..1357) /gene="hisF" /locus_tag="N7324_RS22195" /old_locus_tag="N7324_22205" CDS complement(581..1357) /gene="hisF" /locus_tag="N7324_RS22195" /old_locus_tag="N7324_22205" /EC_number="4.3.2.10" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_014646953.1" /GO_function="GO:0000107 - imidazoleglycerol-phosphate synthase activity [Evidence IEA]" /GO_process="GO:0000105 - histidine biosynthetic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="imidazole glycerol phosphate synthase subunit HisF" /protein_id="WP_005409431.1" /translation="MLSRRIIPCLDVRDGRVVKGVRFRDHVDMGDIAELAQRYRDQGA DELVFYDIGASPEARSVDVAWIERIARLIDIPFCVAGGIDSVETARRVLFAGADKVSI NSPALGRPELITELADEFGVQCVVVGVDSVREADGQWRVRRFSGDPDKTQAVPLRTLD WIVEAQRRGAGEIVLNCMDSDGVRRGYDVVQLQQARALCQVPLIASGGAGAMEHFAEA FDQADVDGALAASVFHSGAIAIPELKRYLRGQQIEVRDVY" gene complement(1351..>1792) /locus_tag="N7324_RS22200" /old_locus_tag="N7324_22210" CDS complement(1351..>1792) /locus_tag="N7324_RS22200" /old_locus_tag="N7324_22210" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_014646952.1" /GO_process="GO:0000105 - histidine biosynthetic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=2 /transl_table=11 /product="HisA/HisF-related TIM barrel protein" /protein_id="WP_279731054.1" /translation="AGRVVVGSLAVRRPDEVVGWLEEFGAERITIALDARQDAQGQWQ LPVHGWTENAGVTLDELAQRYARAGMRHLLCTDIARDGMLAGPNICLYRHLSGLLPGV AVQASGGIRDVADVAEARAAGCGGAILGKALLEQRMDLAEALAC" CONTIG join(JAODYV010000315.1:1..1792) //
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