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MAG: Bilophila sp. isolate L3_079_000M1_dasL3_079_000M1_metabat.metabat.38 L3_079_000M1_scaffold_6301, whole genome shotgun sequence

NCBI Reference Sequence: NZ_JAGZET010000076.1

FASTA Graphics 

LOCUS       NZ_JAGZET010000076      5414 bp    DNA     linear   CON 04-JUL-2024
DEFINITION  MAG: Bilophila sp. isolate
            L3_079_000M1_dasL3_079_000M1_metabat.metabat.38
            L3_079_000M1_scaffold_6301, whole genome shotgun sequence.
ACCESSION   NZ_JAGZET010000076 NZ_JAGZET010000000
VERSION     NZ_JAGZET010000076.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17800770
            Assembly: GCF_018368125.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Bilophila sp. (human gut metagenome)
  ORGANISM  Bilophila sp.
            Bacteria; Pseudomonadati; Thermodesulfobacteriota;
            Desulfovibrionia; Desulfovibrionales; Desulfovibrionaceae;
            Bilophila.
REFERENCE   1  (bases 1 to 5414)
  AUTHORS   Lou,Y.C.
  TITLE     Infant gut strain persistence is associated with maternal origin,
            phylogeny, and functional potential including surface adhesion and
            iron acquisition
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5414)
  AUTHORS   Lou,Y.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2021) Earth and Planetary Science, Jill
            Banfield's Lab at Berkeley, University of California, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAGZET010000076.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2020
            Assembly Method        :: IDBA_UD v. v1.1.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 5.5338x
            Sequencing Technology  :: Illumina NovaSeq 6000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_018368125.1-RS_2024_07_04
            Annotation Date                   :: 07/04/2024 02:54:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,538
            CDSs (total)                      :: 3,476
            Genes (coding)                    :: 3,438
            CDSs (with protein)               :: 3,438
            Genes (RNA)                       :: 62
            rRNAs                             :: 2 (16S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 54
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 38
            CDSs (without protein)            :: 38
            Pseudo Genes (ambiguous residues) :: 0 of 38
            Pseudo Genes (frameshifted)       :: 8 of 38
            Pseudo Genes (incomplete)         :: 27 of 38
            Pseudo Genes (internal stop)      :: 4 of 38
            Pseudo Genes (multiple problems)  :: 1 of 38
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5414
                     /organism="Bilophila sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="L3_079_000M1_scaffold_6301"
                     /isolate="L3_079_000M1_dasL3_079_000M1_metabat.metabat.38"
                     /isolation_source="maternal feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:1929485"
                     /environmental_sample
                     /geo_loc_name="USA: Pittsburgh, Magee-Womens Hospital of
                     UPMC"
                     /lat_lon="40.4308 N 79.9598 W"
                     /collection_date="2016/2019"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
     gene            <1..452
                     /locus_tag="KHX83_RS17470"
                     /old_locus_tag="KHX83_17450"
                     /pseudo
     CDS             <1..452
                     /locus_tag="KHX83_RS17470"
                     /old_locus_tag="KHX83_17450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="incomplete; too short partial abutting assembly
                     gap; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     GeneMarkS-2+."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(547..921)
                     /locus_tag="KHX83_RS17475"
                     /old_locus_tag="KHX83_17455"
     CDS             complement(547..921)
                     /locus_tag="KHX83_RS17475"
                     /old_locus_tag="KHX83_17455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_287548439.1"
                     /translation="MFGTGFTEAHTLYIHHVPDAVAGPAAAPAREHAEDVVLGAGIAK
                     VPFPVGPDHEAIRLAHFTTTNRAWAIPAIPSGFHASTETVPIKFQHGAHNNLSVSIRC
                     LILLSTYFIYFLSEWTDGQICM"
     gene            902..1366
                     /locus_tag="KHX83_RS17480"
                     /old_locus_tag="KHX83_17460"
     CDS             902..1366
                     /locus_tag="KHX83_RS17480"
                     /old_locus_tag="KHX83_17460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_287548441.1"
                     /translation="MKPVPNISPGAATDLLVRLIIRVLDASTVSIEIEPAQVLATREY
                     VDRKLDAHNKDGGTHEMLARKSVEIKAGTGLTGGGTLEATRTLAVSYGNTAGTACQGN
                     DARLSNARTHAAHAASHKRGGCDPLEVFFRFDNTVLRFTRHNREIPTHQWSS"
     gene            1940..2572
                     /locus_tag="KHX83_RS17485"
     CDS             1940..2572
                     /locus_tag="KHX83_RS17485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009368205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_287548443.1"
                     /translation="MKQHVTVIPSDRLIIVDGASLRFAFDTPADLHALQWHEGRGEME
                     WTDDINHPLTPADYADDVAPFVALWETEKARLDAEANRPPTLEQAKTAKISEIRVAFA
                     VAEAGGYIASSLGFRADATRRSIEDIEGLIDLVVSGVLTIWPPEPRRGTLPVGALKRW
                     PSPAWGWGQDASSLPLRQKLCSKASMTACSRSHFPRACGRRWSDPGNINR"
     gene            2845..4353
                     /locus_tag="KHX83_RS17490"
                     /old_locus_tag="KHX83_17470"
     CDS             2845..4353
                     /locus_tag="KHX83_RS17490"
                     /old_locus_tag="KHX83_17470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005026939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4942 domain-containing protein"
                     /protein_id="WP_287548445.1"
                     /translation="MYNSSFYPTPPEVAEKMLAKVSKLYERSILEPSAGKGDLADAAV
                     GRLDRYYNRCRERVHCIEIEPELQAAIRGKGYPLVGTDFLTFWPDEKYDLILMNPPFA
                     NGEGHLLHAWEILDHGDIVCLLNEQTLLSPCTANRKLLATVIEAHGEVEHLGRCFAED
                     AFRKTQVRVSLVHLHKKREEPKFSFEVGSDEEGTAVFSDGSRFESEVATRDTVGNLVA
                     QYGLCRDLFVQELAYYAGPLGTDGGETVGEALKELMLQKPTRRAQEEAYNRFVHSLKR
                     SAWREVLRLTDVRNLASHGVQKELDRLLESNERMAFSEENVYAFVESIFLNRGAILQQ
                     CVVEAFDLMTRYYDENRVPVEGWKTNDAWKVNRRVVLPRVVSVTFGGSGYVSYGNSRQ
                     NLNDIDRAIAFLEGKKLESVPCTAVCAREGHLKACGDDFSGVPFESTYFEMRCYKKGT
                     LHMHFKDKELWERFNLTAARGKNWLPDDVKAREREDRTWNRRTDQYGLPLSA"
     gene            4587..4745
                     /locus_tag="KHX83_RS17495"
     CDS             4587..4745
                     /locus_tag="KHX83_RS17495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_287548447.1"
                     /translation="MHPDDFDAHFENMQSALRGGAMGEVVSNLSSTIEDVVFNVLNEC
                     KTFRTEAE"
     gene            complement(4847..5323)
                     /locus_tag="KHX83_RS17500"
                     /old_locus_tag="KHX83_17480"
     CDS             complement(4847..5323)
                     /locus_tag="KHX83_RS17500"
                     /old_locus_tag="KHX83_17480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009378499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_287548448.1"
                     /translation="MHIEWNITKRRGNIRPVLHYTVTLEEHERELALPFIRVVSTIPE
                     PPDSWQEFCYPGQHERAENPASGKTYDLEIPSHKGRLWKRSLRLPWREENDYPEVEQS
                     FKKLRDAFEAELKAAYGSLPMDESNSLETSFDARRFIAPGILAERFLILARNAKAS"
CONTIG      join(JAGZET010000076.1:1..5414)
//
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