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NCBI Reference Sequence: NZ_JAGZET010000076.1
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LOCUS NZ_JAGZET010000076 5414 bp DNA linear CON 04-JUL-2024 DEFINITION MAG: Bilophila sp. isolate L3_079_000M1_dasL3_079_000M1_metabat.metabat.38 L3_079_000M1_scaffold_6301, whole genome shotgun sequence. ACCESSION NZ_JAGZET010000076 NZ_JAGZET010000000 VERSION NZ_JAGZET010000076.1 DBLINK BioProject: PRJNA224116 BioSample: SAMN17800770 Assembly: GCF_018368125.1 KEYWORDS WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq. SOURCE Bilophila sp. (human gut metagenome) ORGANISM Bilophila sp. Bacteria; Pseudomonadati; Thermodesulfobacteriota; Desulfovibrionia; Desulfovibrionales; Desulfovibrionaceae; Bilophila. REFERENCE 1 (bases 1 to 5414) AUTHORS Lou,Y.C. TITLE Infant gut strain persistence is associated with maternal origin, phylogeny, and functional potential including surface adhesion and iron acquisition JOURNAL Unpublished REFERENCE 2 (bases 1 to 5414) AUTHORS Lou,Y.C. TITLE Direct Submission JOURNAL Submitted (08-FEB-2021) Earth and Planetary Science, Jill Banfield's Lab at Berkeley, University of California, Berkeley, CA 94720, USA COMMENT REFSEQ INFORMATION: The reference sequence is identical to JAGZET010000076.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 2020 Assembly Method :: IDBA_UD v. v1.1.3 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 5.5338x Sequencing Technology :: Illumina NovaSeq 6000 ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_018368125.1-RS_2024_07_04 Annotation Date :: 07/04/2024 02:54:47 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,538 CDSs (total) :: 3,476 Genes (coding) :: 3,438 CDSs (with protein) :: 3,438 Genes (RNA) :: 62 rRNAs :: 2 (16S) partial rRNAs :: 2 (16S) tRNAs :: 54 ncRNAs :: 6 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38 Pseudo Genes (frameshifted) :: 8 of 38 Pseudo Genes (incomplete) :: 27 of 38 Pseudo Genes (internal stop) :: 4 of 38 Pseudo Genes (multiple problems) :: 1 of 38 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5414 /organism="Bilophila sp." /mol_type="genomic DNA" /submitter_seqid="L3_079_000M1_scaffold_6301" /isolate="L3_079_000M1_dasL3_079_000M1_metabat.metabat.38" /isolation_source="maternal feces" /host="Homo sapiens" /db_xref="taxon:1929485" /environmental_sample /geo_loc_name="USA: Pittsburgh, Magee-Womens Hospital of UPMC" /lat_lon="40.4308 N 79.9598 W" /collection_date="2016/2019" /metagenome_source="human gut metagenome" /metagenomic gene <1..452 /locus_tag="KHX83_RS17470" /old_locus_tag="KHX83_17450" /pseudo CDS <1..452 /locus_tag="KHX83_RS17470" /old_locus_tag="KHX83_17450" /inference="COORDINATES: ab initio prediction:GeneMarkS-2+" /note="incomplete; too short partial abutting assembly gap; missing N-terminus; Derived by automated computational analysis using gene prediction method: GeneMarkS-2+." /pseudo /codon_start=3 /transl_table=11 /product="hypothetical protein" gene complement(547..921) /locus_tag="KHX83_RS17475" /old_locus_tag="KHX83_17455" CDS complement(547..921) /locus_tag="KHX83_RS17475" /old_locus_tag="KHX83_17455" /inference="COORDINATES: ab initio prediction:GeneMarkS-2+" /note="Derived by automated computational analysis using gene prediction method: GeneMarkS-2+." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_287548439.1" /translation="MFGTGFTEAHTLYIHHVPDAVAGPAAAPAREHAEDVVLGAGIAK VPFPVGPDHEAIRLAHFTTTNRAWAIPAIPSGFHASTETVPIKFQHGAHNNLSVSIRC LILLSTYFIYFLSEWTDGQICM" gene 902..1366 /locus_tag="KHX83_RS17480" /old_locus_tag="KHX83_17460" CDS 902..1366 /locus_tag="KHX83_RS17480" /old_locus_tag="KHX83_17460" /inference="COORDINATES: ab initio prediction:GeneMarkS-2+" /note="Derived by automated computational analysis using gene prediction method: GeneMarkS-2+." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_287548441.1" /translation="MKPVPNISPGAATDLLVRLIIRVLDASTVSIEIEPAQVLATREY VDRKLDAHNKDGGTHEMLARKSVEIKAGTGLTGGGTLEATRTLAVSYGNTAGTACQGN DARLSNARTHAAHAASHKRGGCDPLEVFFRFDNTVLRFTRHNREIPTHQWSS" gene 1940..2572 /locus_tag="KHX83_RS17485" CDS 1940..2572 /locus_tag="KHX83_RS17485" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_009368205.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_287548443.1" /translation="MKQHVTVIPSDRLIIVDGASLRFAFDTPADLHALQWHEGRGEME WTDDINHPLTPADYADDVAPFVALWETEKARLDAEANRPPTLEQAKTAKISEIRVAFA VAEAGGYIASSLGFRADATRRSIEDIEGLIDLVVSGVLTIWPPEPRRGTLPVGALKRW PSPAWGWGQDASSLPLRQKLCSKASMTACSRSHFPRACGRRWSDPGNINR" gene 2845..4353 /locus_tag="KHX83_RS17490" /old_locus_tag="KHX83_17470" CDS 2845..4353 /locus_tag="KHX83_RS17490" /old_locus_tag="KHX83_17470" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_005026939.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DUF4942 domain-containing protein" /protein_id="WP_287548445.1" /translation="MYNSSFYPTPPEVAEKMLAKVSKLYERSILEPSAGKGDLADAAV GRLDRYYNRCRERVHCIEIEPELQAAIRGKGYPLVGTDFLTFWPDEKYDLILMNPPFA NGEGHLLHAWEILDHGDIVCLLNEQTLLSPCTANRKLLATVIEAHGEVEHLGRCFAED AFRKTQVRVSLVHLHKKREEPKFSFEVGSDEEGTAVFSDGSRFESEVATRDTVGNLVA QYGLCRDLFVQELAYYAGPLGTDGGETVGEALKELMLQKPTRRAQEEAYNRFVHSLKR SAWREVLRLTDVRNLASHGVQKELDRLLESNERMAFSEENVYAFVESIFLNRGAILQQ CVVEAFDLMTRYYDENRVPVEGWKTNDAWKVNRRVVLPRVVSVTFGGSGYVSYGNSRQ NLNDIDRAIAFLEGKKLESVPCTAVCAREGHLKACGDDFSGVPFESTYFEMRCYKKGT LHMHFKDKELWERFNLTAARGKNWLPDDVKAREREDRTWNRRTDQYGLPLSA" gene 4587..4745 /locus_tag="KHX83_RS17495" CDS 4587..4745 /locus_tag="KHX83_RS17495" /inference="COORDINATES: ab initio prediction:GeneMarkS-2+" /note="Derived by automated computational analysis using gene prediction method: GeneMarkS-2+." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_287548447.1" /translation="MHPDDFDAHFENMQSALRGGAMGEVVSNLSSTIEDVVFNVLNEC KTFRTEAE" gene complement(4847..5323) /locus_tag="KHX83_RS17500" /old_locus_tag="KHX83_17480" CDS complement(4847..5323) /locus_tag="KHX83_RS17500" /old_locus_tag="KHX83_17480" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_009378499.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_287548448.1" /translation="MHIEWNITKRRGNIRPVLHYTVTLEEHERELALPFIRVVSTIPE PPDSWQEFCYPGQHERAENPASGKTYDLEIPSHKGRLWKRSLRLPWREENDYPEVEQS FKKLRDAFEAELKAAYGSLPMDESNSLETSFDARRFIAPGILAERFLILARNAKAS" CONTIG join(JAGZET010000076.1:1..5414) //
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