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NCBI Reference Sequence: NZ_JADKYK010000060.1
FASTA Graphics
LOCUS NZ_JADKYK010000060 12456 bp DNA linear CON 13-OCT-2024 DEFINITION Enterobacter chengduensis strain IR5473 Scaffold60, whole genome shotgun sequence. ACCESSION NZ_JADKYK010000060 NZ_JADKYK010000000 VERSION NZ_JADKYK010000060.1 DBLINK BioProject: PRJNA224116 BioSample: SAMN16561281 Assembly: GCF_017312015.1 KEYWORDS WGS; RefSeq. SOURCE Enterobacter chengduensis ORGANISM Enterobacter chengduensis Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex. REFERENCE 1 (bases 1 to 12456) AUTHORS Wang,L. TITLE Genomics of OXA-48-producing Enterobacteriaceae from China JOURNAL Unpublished REFERENCE 2 (bases 1 to 12456) AUTHORS Wang,L. TITLE Direct Submission JOURNAL Submitted (02-NOV-2020) Department of Clinical Laboratory, Chinese PLA General Hospital, No. 28 Fuxing Road, Haidian District, Beijing 100853, China COMMENT REFSEQ INFORMATION: The reference sequence is identical to JADKYK010000060.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 22-JAN-2019 Assembly Method :: SOAPdenovo v. 2.21 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 100x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_017312015.1-RS_2024_10_12 Annotation Date :: 10/12/2024 02:51:26 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.8 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,884 CDSs (total) :: 4,782 Genes (coding) :: 4,652 CDSs (with protein) :: 4,652 Genes (RNA) :: 102 rRNAs :: 8, 4, 6 (5S, 16S, 23S) complete rRNAs :: 7, 1, 1 (5S, 16S, 23S) partial rRNAs :: 1, 3, 5 (5S, 16S, 23S) tRNAs :: 75 ncRNAs :: 9 Pseudo Genes (total) :: 130 CDSs (without protein) :: 130 Pseudo Genes (ambiguous residues) :: 0 of 130 Pseudo Genes (frameshifted) :: 39 of 130 Pseudo Genes (incomplete) :: 98 of 130 Pseudo Genes (internal stop) :: 18 of 130 Pseudo Genes (multiple problems) :: 22 of 130 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..12456 /organism="Enterobacter chengduensis" /mol_type="genomic DNA" /submitter_seqid="Scaffold60" /strain="IR5473" /host="Homo sapiens" /db_xref="taxon:2494701" /geo_loc_name="China: Beijing" /collection_date="2018-01-12" gene <126..446 /gene="trbF" /locus_tag="ITR15_RS23430" /old_locus_tag="ITR15_23410" /pseudo CDS <126..446 /gene="trbF" /locus_tag="ITR15_RS23430" /old_locus_tag="ITR15_23410" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_020818572.1" /note="internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="conjugal transfer protein TrbF" gene 443..1492 /gene="trbG" /locus_tag="ITR15_RS23435" /old_locus_tag="ITR15_23415" CDS 443..1492 /gene="trbG" /locus_tag="ITR15_RS23435" /old_locus_tag="ITR15_23415" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_006022579.1" /GO_process="GO:0009291 - unidirectional conjugation [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="P-type conjugative transfer protein TrbG" /protein_id="WP_011191356.1" /translation="MKPYFRKAGNPASHTHVLPALRRAAFPVVLLAATALAGCATTNP PPEISYDNAAPAVQTVDPPAPVTVVELPRPLPLPGQLQRVEETRRAPEPSNPTARVNQ ANEAARVQPVRDGFINSMQVYPWTQGALYQVYTAVGQITDIALQPGEQLVGAGPVAAG DTVRWIIGDTESGSGATRQIHILVKPTRADLMTNLVINTNMRTYHMELRSTERTYMAS VSWQYPQDQLIALRRQNAEAQAAQPVASGVDLANVNFRYAIEGDRAPWRPLRAFDDGR QVFIEFPRGIGQGEMPPLFVVGPEGNTSELVNYRVRGHHMIVDRLFAAAELRFGSGRE QKRVRIVRTDGRPTS" gene 1489..2709 /locus_tag="ITR15_RS23440" /old_locus_tag="ITR15_23420" CDS 1489..2709 /locus_tag="ITR15_RS23440" /old_locus_tag="ITR15_23420" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_011191355.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="TrbI/VirB10 family protein" /protein_id="WP_011191355.1" /translation="MSENPPRIEEVPDDDAQPLTGEPVGPAPMRLRAEPPRVTRLSRK VLAGLGLVASVGLGGALIYALQTRDAGRPNDELYSTENRSTADGLAGLPRDYSGVPQL GPPLPGDLGRPILSTQDRGQPVPTPGTATPNPGISPEEQRRLQEIETARTSRLFSGSE SRGTPAAAGAAPALAPVPDLASIGLAPPPATPSAQDRQNAFLNAAADRRTVAPDRVAA PVSPNVLQAGAVISAALITGIRSDLPGQITAQVTENIYDSPTGRILLVPQGTRVVGQY DNNVQFGQSRVLLVWTRLVFPNGRSIVLERQPGADAEGFAGLQDGVDYHWWDLAKAAG LSTLLSVGAELAVDNDDQLVQAIRNGGQDTINDAGQQIVRRQLNVAPTITIRPGFPVR VLVTRDLVLEPYGG" gene 2712..2948 /locus_tag="ITR15_RS23445" /old_locus_tag="ITR15_23425" CDS 2712..2948 /locus_tag="ITR15_RS23445" /old_locus_tag="ITR15_23425" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_018429611.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DUF2274 domain-containing protein" /protein_id="WP_026227538.1" /translation="MSKLKLGPIADDKPLKVQVELPAALHQDLVDYAHLLGREQGQSA VDPARLIVPMLQRFIATDRGFAKARRTLTPGSAD" gene complement(2945..3841) /locus_tag="ITR15_RS23450" /old_locus_tag="ITR15_23430" CDS complement(2945..3841) /locus_tag="ITR15_RS23450" /old_locus_tag="ITR15_23430" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_018429612.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="WP_011191354.1" /translation="MPDLTLDLRYLKYAVQVAEAGSFRRAAERLSISQSTVSRRVQLF ERQLGFSLFKRTRAGAGLTPEGERFLQQAVVGARYLRNAATEIRSARKLKTGLVRFGM LEAFPACPIINILSAFRNRHPTIEVKLEEGTSEENTLGVKRGLLDAAISLSASKSPQF QVRRLCEPDLFVALSPLHELAARPQLSWEDVCDEVFLVRSDGAGRELAGILRRMVGAG DGAVQLSIQQVSRETLLTMVEQGFGLTITSVIYRPDIALIPLPSARAPTAAIISSSDN DNPTLPLLLKCFDTPSRAGTTD" gene 4209..4631 /locus_tag="ITR15_RS23455" /old_locus_tag="ITR15_23435" CDS 4209..4631 /locus_tag="ITR15_RS23455" /old_locus_tag="ITR15_23435" /inference="COORDINATES: protein motif:HMM:NF013231.5" /GO_function="GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]" /GO_process="GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="MarR family winged helix-turn-helix transcriptional regulator" /protein_id="WP_223296479.1" /translation="MVLLSMEPGLPISVLATSIGLSHAGTVRLIDRLEREQLVERRRQ ITDRRARFIHLTNSGKKITDALLKAREQVISECISPLSPNDLDILGMLSERLLVANGF DKDGSVSLCHLCGYSRIAPSRGKAKPGRSPRWNVASEG" gene 4658..5617 /locus_tag="ITR15_RS23460" /old_locus_tag="ITR15_23440" CDS 4658..5617 /locus_tag="ITR15_RS23460" /old_locus_tag="ITR15_23440" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_004099025.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="YeeE/YedE thiosulfate transporter family protein" /protein_id="WP_004099025.1" /translation="MGSFALELLLCVLAFGFGYAANQGGTCLVVAAHELHRRQPPKMF VGFLAASAAAGLVAVPIVWTGTLGATLAPSTSINFLLLIGAIAFGLGALINDTCLLGS LARLGDGEMRLLALPLGLTIGILAADHGRFGYDSTWPSLISKPSATGLVTLLAFLVVL VLALVFVSTKSVLRTKPGWSFGASMIGLGITGGLLYALSPAWTFADVIQRALPLRMSP AGEVALTAVISSIAGALTASFRQGNLRLQLPTANGILRSVVGGTLMGIGIALIPGGND GLILAAVPTLSPGGIVAYLLMTTTIVFGFAARGKLFRRCLSRP" gene complement(5656..6042) /locus_tag="ITR15_RS23465" /old_locus_tag="ITR15_23445" CDS complement(5656..6042) /locus_tag="ITR15_RS23465" /old_locus_tag="ITR15_23445" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_004099026.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DUF6314 family protein" /protein_id="WP_004099026.1" /translation="MDAALDEITMPTEIVAAIGEGALAYRESGILSLADGRVFSACRQ YRYRLSEDSVVVEFADGPHIGTQFLSLSFSRTDTGLEASGVYACGDDTYHATYRILGP AAFEVVIMVQGPAKAYELVSRYSRSG" gene 6313..6801 /locus_tag="ITR15_RS23470" /old_locus_tag="ITR15_23450" CDS 6313..6801 /locus_tag="ITR15_RS23470" /old_locus_tag="ITR15_23450" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_004099027.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="YkgB family protein" /protein_id="WP_004099027.1" /translation="MSIFDRYEFLVPEHGRRDLGLLRWALVIVFLWFGAMKFTAYEAY GIAPFIEHSPIMNWLGMFGTQGQSYFIGVIELSTGLVLILGAFRPLFSALGALMSAAT YLITLTFFITTPGVAEQTAGGFPAISAAPGQFLLKDAVLLAASLVLLRASVRHRGALV LS" gene 7359..7853 /locus_tag="ITR15_RS23475" /old_locus_tag="ITR15_23460" CDS 7359..7853 /locus_tag="ITR15_RS23475" /old_locus_tag="ITR15_23460" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_004099028.1" /GO_function="GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]" /GO_process="GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="MarR family winged helix-turn-helix transcriptional regulator" /protein_id="WP_004099028.1" /translation="MISDDIVRASSSRAPEAGPAASALALLAHKPGLSIRMLAIGVGL SHAGTVRLVDRLVSEGLIERREHSTDGRARSLYLTPTGKVASDEVLASRDQVIAEGLS ILNPDELKTLSDIAERVLRNRLENLEQSYRICRLCCYEGCTNCPVDAELHERGVDREK NDDA" gene complement(8250..9275) /locus_tag="ITR15_RS23480" /old_locus_tag="ITR15_23465" CDS complement(8250..9275) /locus_tag="ITR15_RS23480" /old_locus_tag="ITR15_23465" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_004357654.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="zinc-binding alcohol dehydrogenase family protein" /protein_id="WP_004357654.1" /translation="MMTETVTNQAAWQKAPGQPLRIGVTALPHLAANEILIRNAAIAI NPLDWILQDVALLPWLDYPAILGSDVSGEVAAVGGAVERFKVGDRVIGQAVGTTVNQP AQGAFQHHTIVLDHMAAPIPNNIAFADAAVLPLGLGTAASGLYGRTQLALAPPLHSPT ARPEVVLVWGGSSSVGCNAIQLAVASGYRCVATASARNVGLLKELGASEVLDHSSPAI VEDVIEAMRGRSLAGTLHATGHMKDCFAVVARCEGSRRVAATLAPPDERSFGVEATHI SGTSLKDDEVGPMIYREFLPQALAARTFVPAPPAKIVGQGLEMLQAALEALKAGVSAA KIVVTLP" gene complement(9275..9838) /gene="msrA" /locus_tag="ITR15_RS23485" /old_locus_tag="ITR15_23470" CDS complement(9275..9838) /gene="msrA" /locus_tag="ITR15_RS23485" /old_locus_tag="ITR15_23470" /EC_number="1.8.4.11" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_003464967.1" /GO_function="GO:0033744 - L-methionine:thioredoxin-disulfide S-oxidoreductase activity [Evidence IEA]; GO:0008113 - peptide-methionine (S)-S-oxide reductase activity [Evidence IEA]" /GO_process="GO:0030091 - protein repair [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="peptide-methionine (S)-S-oxide reductase MsrA" /protein_id="WP_011191350.1" /translation="MSQSPTGNRAAATERAILAGGCFWGMEDLLRRARGVISTRVGYT GGEMPDPTYARHYGHAEAVEVTFDPSVLAYRSLLELFFQIHDPTTYEQQGSDVGPSYR SAIFYTTEVQKEVALTTIAEIEASGSWPGPVVSEINPEEPFWEAEPEHQEYLVRYPGG YSCHFVRPTWRLDRSDERPAVILDRKS" gene complement(9871..11103) /locus_tag="ITR15_RS23490" /old_locus_tag="ITR15_23475" CDS complement(9871..11103) /locus_tag="ITR15_RS23490" /old_locus_tag="ITR15_23475" /EC_number="1.11.1.-" /EC_number="3.-.-.-" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_018429618.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="bifunctional alpha/beta hydrolase/OsmC family protein" /protein_id="WP_032640617.1" /translation="MDMAGRSFTFVSGAGSPLSGHLEPPEGTPRGWAIFAHCFTCGKD SRAAVHISRALSRAGIGVLRFDFAGTGIGGGTGEPVNFASDVEDLRAAANAMAAAGMS PSLLVGHSLGGTAAIVAAADMPDIAAVATIGAPADLQHILRLFGPNDLDTIASEGEAS VEIAGRPFLIRRGFLEAVEGIDVEKAIASLRRPVLVMHSPLDQVVGIDHASRIFVASR HPKSFISLDNADHLLTDVADANYAAATVAVWASRFLPPLSADLPQVEVAEGVVSTETL AGTFQLKVRSGEHTLFADEPASVGGLGTGLSPYELVSAGLAACTVMTMRLYANRKGFP LERASTTVQHEKVPDMMPPDRFTRTIVLDGPLSDDQRARILAIADRCPVDLSLIRGSD VQTELLSASQAADPARLA" gene 11332..12207 /locus_tag="ITR15_RS23495" /old_locus_tag="ITR15_23480" CDS 11332..12207 /locus_tag="ITR15_RS23495" /old_locus_tag="ITR15_23480" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_018429619.1" /GO_function="GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]" /GO_process="GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="WP_011191349.1" /translation="MELNQVSYFINLAETLNFTAAARLSGVSQPSLTRAIRRLEDELG GPLIYRDGKNSRLTGLGHDVEAEFRRMVVAMKSVRNHSEHWAMGGHRVLDVAVAPTVG PKEFTAFFESALAEMPSIEIKLHSLQSNEDTSEVLSGKYHACIMPRETRPERKLDVHP LFRERFVLGCSANHPLAANEIVRGEDLLEFPFVDRLKCEFRDRILDHFARRDLLMRPR FRSDREDWVQRVVADGHAICILPERSPTVQGLVTRPIDGFVLEREVVIATVSGSTATV EIRNIAQLAARYEWN" gene complement(12353..>12456) /locus_tag="ITR15_RS24505" CDS complement(12353..>12456) /locus_tag="ITR15_RS24505" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001395480.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=3 /transl_table=11 /product="hypothetical protein" /protein_id="WP_046276267.1" /translation="HQCRSMWQLLKKVRHFMETASPFPGGKHGQAKV" CONTIG join(JADKYK010000060.1:1..12456) //
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