Warning: The NCBI web site requires JavaScript to function. more...
An official website of the United States government
The .gov means it's official. Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you're on a federal government site.
The site is secure. The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.
Download features.
Download gene features.
NCBI Reference Sequence: NZ_JACXBK010000142.1
FASTA Graphics
LOCUS NZ_JACXBK010000142 6265 bp DNA linear CON 15-DEC-2024 DEFINITION Xenorhabdus szentirmaii strain 38 WTCHG_223154_283_1_contig_142, whole genome shotgun sequence. ACCESSION NZ_JACXBK010000142 NZ_JACXBK010000000 VERSION NZ_JACXBK010000142.1 DBLINK BioProject: PRJNA224116 BioSample: SAMN16091688 Assembly: GCF_014697795.1 KEYWORDS WGS; RefSeq. SOURCE Xenorhabdus szentirmaii ORGANISM Xenorhabdus szentirmaii Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Morganellaceae; Xenorhabdus. REFERENCE 1 (bases 1 to 6265) AUTHORS Palma,L., Frizzo,L., Kaiser,S., Berry,C., Caballero,P., Bode,H.B. and Del Valle,E.E. TITLE Genome Sequence Analysis of Native Xenorhabdus Strains Isolated from Entomopathogenic Nematodes in Argentina JOURNAL Toxins (Basel) 16 (2), 108 (2024) REMARK DOI: 10.3390/toxins16020108 REFERENCE 2 (bases 1 to 6265) AUTHORS Palma,L., Caballero,P., Berry,C. and Del Valle,E. TITLE Direct Submission JOURNAL Submitted (15-SEP-2020) Centro de Investigaciones y Transferencias, Centro de Investigaciones y Transferencias, Universidad Nacional de Villa Maria (CIT-CONICET), Av. Arturo Jauretche 1555, Villa Maria, Cordoba 5900, Argentina COMMENT REFSEQ INFORMATION: The reference sequence is identical to JACXBK010000142.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Velvet v. 1 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 20 x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_014697795.1-RS_2024_12_14 Annotation Date :: 12/14/2024 03:58:16 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,378 CDSs (total) :: 4,321 Genes (coding) :: 4,113 CDSs (with protein) :: 4,113 Genes (RNA) :: 57 rRNAs :: 2, 6 (16S, 23S) complete rRNAs :: 1, 1 (16S, 23S) partial rRNAs :: 1, 5 (16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 208 CDSs (without protein) :: 208 Pseudo Genes (ambiguous residues) :: 0 of 208 Pseudo Genes (frameshifted) :: 59 of 208 Pseudo Genes (incomplete) :: 143 of 208 Pseudo Genes (internal stop) :: 53 of 208 Pseudo Genes (multiple problems) :: 41 of 208 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6265 /organism="Xenorhabdus szentirmaii" /mol_type="genomic DNA" /submitter_seqid="WTCHG_223154_283_1_contig_142" /strain="38" /isolation_source="soil" /host="nematode" /db_xref="taxon:290112" /geo_loc_name="Argentina" /collection_date="01-Jan-2014" gene 41..1303 /locus_tag="ID859_RS20005" /old_locus_tag="ID859_19730" /pseudo CDS 41..1303 /locus_tag="ID859_RS20005" /old_locus_tag="ID859_19730" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_012989088.1" /note="internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="tyrosine-type recombinase/integrase" gene 1450..1938 /locus_tag="ID859_RS20010" /old_locus_tag="ID859_19735" CDS 1450..1938 /locus_tag="ID859_RS20010" /old_locus_tag="ID859_19735" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001519848.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_323861247.1" /translation="MITINEIKEEAFKFRHLLENCDKSKTELVLECFPVMSCTLSSML LSYHFLKLWPELELKGVRAATGKNNEITHYWLEIGDVVIDITGDQYNIINAKELNREI VLSRPFTSVHISYQKKSYLYKLFKVQEKECFVYGFPTIEEDFIEEMELSYSQLLNQTK CT" gene 2516..2725 /locus_tag="ID859_RS20015" /old_locus_tag="ID859_19740" CDS 2516..2725 /locus_tag="ID859_RS20015" /old_locus_tag="ID859_19740" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_012989072.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="AlpA family transcriptional regulator" /protein_id="WP_323861248.1" /translation="MPAITTSKESLIRLPEVQRRTGYSKAWIYRLIKEDKFPKQVKIG PRSVAFVESEIDGWVDQRIAESRGI" gene complement(2798..2977) /locus_tag="ID859_RS20020" /old_locus_tag="ID859_19745" CDS complement(2798..2977) /locus_tag="ID859_RS20020" /old_locus_tag="ID859_19745" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_013185561.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_092514019.1" /translation="MSTHKNIRRGNPPFQFRLDPELRELMEIAQAQDGDESLAAWIKR LIRKELQSRGIESNP" gene 3110..5884 /locus_tag="ID859_RS20025" /old_locus_tag="ID859_19750" CDS 3110..5884 /locus_tag="ID859_RS20025" /old_locus_tag="ID859_19750" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_013185393.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DUF927 domain-containing protein" /protein_id="WP_323861249.1" /translation="MADTQHNQTRLKFTSLDKSGSQKPLEFIQTVKQSAMYHWEKLLP ACGIDIPAKDKHGACPICGGTDRFQFIDDHHHGNWHCRQCDVPNYGDGLDLVAKTKGI SITEAAKIVADVLALPLPEPKPARKTIQTTQSIADRVAALMAQTIAGQSPYLTTKGLH CSNQRLQSDNSAVLRLVTLDGKVTGAQIIKPNGEKKLLTGSQKKGAFIALSALEDNPD TVIITEGYATALTASQLCEEAVLAALDAGNLISVAQSVRKRWPDTKIIIAADNDWHHP DELDKSGKPKANIGKISAEKVAVAVNGWITLPPTEHKADWDDYRQQYGIEAAKQAFNN GLYQVGDKVTVSKSAVGHSDECREKDSDPFKPHIDIRNTGIYWVEPKEQGGEIVEVEK WLSDYMEIVGIGNDGSEGYLIIKLRQEGTGKYIVEALPRREIGMPVGWARLRSRGMNI TVKNSLLPILAEHLQRSGDRREWVVTQKEGWHCGAYVMPDGEIIGQPYMPVAFSGGTS AIAGYVVRGSAEQWKTHVASLMKGNRSMMLGVLVGLAAPLNSLTGGSCFGVHLFAQSS AGKTTTVEAASSLYGDPEELKLSWHGTNHGLNNEAAARNDGFMPIDEIGQSSNPKEVA NSAYSLFNGVGKIQGKREGGNRAVIRWKIAALSTGEEDLETFLIKGGITPKAGQLVRL LSVPFIDTEFFNGYEDGDSHARAIKRESKRYCGAAGREWILWLSEHQEQAIELTTRKE KEWLDSLPEEASAQVKRVAVRFALLDATGELVTHITGWGREACHTAIKQSFDDWLADF GIGNREKYQVITRARDFIQKYGLSRFQPYTYGRPNGDIDTAHAMRINGLAGYLVHNRR DDGLVEYHIIPSVFEGEILQGLQKKTAFEALEEAGMLIKTEKDRFISKTISVNGTQGR FVVLIFRDED" CONTIG join(JACXBK010000142.1:1..6265) //
Whole sequence (abbreviated view) Selected region from: to:
All features Gene, RNA, and CDS features only
Show sequence Show reverse complement Show gap features
Your browsing activity is empty.
Activity recording is turned off.
Turn recording back on