LOCUS NZ_JACOIW010000002 5691 bp DNA linear CON 09-JAN-2025
DEFINITION Klebsiella aerogenes strain UCI179 scaffold00002, whole genome
shotgun sequence.
ACCESSION NZ_JACOIW010000002 NZ_JACOIW010000000
VERSION NZ_JACOIW010000002.1
DBLINK BioProject: PRJNA224116
BioSample: SAMN08148302
Assembly: GCF_014901455.1
KEYWORDS WGS; RefSeq.
SOURCE Klebsiella aerogenes
ORGANISM Klebsiella aerogenes
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
Enterobacterales; Enterobacteriaceae; Klebsiella/Raoultella group;
Klebsiella.
REFERENCE 1 (bases 1 to 5691)
AUTHORS Earl,A.M., Manson,A.L., Bhattacharyya,R., Brennan-Krohn,T.,
Cosimi,L., Delaney,M., Ferraro,M.J., Gilmore,M., Gussin,G.,
Hooper,D., Huang,S., Kim,D., Kirby,J., Onderdonk,A., Peterson,E.,
Pierce,V., Shinoy,E., Wurster,J., Shea,T.P., Howe,W., Livny,J.,
Cuomo,C.A., Neafsey,D.E. and Birren,B.W.
TITLE Multi-genus dynamics of carbapenem resistance within hospitals
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 5691)
AUTHORS Earl,A.M., Manson,A.L., Bhattacharyya,R., Brennan-Krohn,T.,
Cosimi,L., Delaney,M., Ferraro,M.J., Gilmore,M., Gussin,G.,
Hooper,D., Huang,S., Kim,D., Kirby,J., Onderdonk,A., Peterson,E.,
Pierce,V., Shinoy,E., Wurster,J., Shea,T.P., Howe,W., Livny,J.,
Cuomo,C.A., Neafsey,D.E. and Birren,B.W.
TITLE Direct Submission
JOURNAL Submitted (18-AUG-2020) Infectious Disease and Microbiome Program,
Broad Institute, 415 Main Street, Cambridge, MA 02142, USA
COMMENT REFSEQ INFORMATION: The reference sequence is identical to
JACOIW010000002.1.
The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Method :: AllPaths v. R48559
Genome Representation :: Full
Expected Final Version :: No
Genome Coverage :: 111x
Sequencing Technology :: Illumina
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Name :: GCF_014901455.1-RS_2025_01_09
Annotation Date :: 01/09/2025 02:54:44
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 6.9
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA
Genes (total) :: 5,047
CDSs (total) :: 4,962
Genes (coding) :: 4,881
CDSs (with protein) :: 4,881
Genes (RNA) :: 85
rRNAs :: 8, 5, 4 (5S, 16S, 23S)
complete rRNAs :: 8, 5, 3 (5S, 16S, 23S)
partial rRNAs :: 1 (23S)
tRNAs :: 62
ncRNAs :: 6
Pseudo Genes (total) :: 81
CDSs (without protein) :: 81
Pseudo Genes (ambiguous residues) :: 0 of 81
Pseudo Genes (frameshifted) :: 34 of 81
Pseudo Genes (incomplete) :: 46 of 81
Pseudo Genes (internal stop) :: 9 of 81
Pseudo Genes (multiple problems) :: 8 of 81
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..5691
/organism="Klebsiella aerogenes"
/mol_type="genomic DNA"
/submitter_seqid="scaffold00002"
/strain="UCI179"
/host="Homo sapiens"
/db_xref="taxon:548"
/geo_loc_name="USA: CA"
/collected_by="University of California, Irvine"
gene complement(19..198)
/locus_tag="CXM48_RS25075"
CDS complement(19..198)
/locus_tag="CXM48_RS25075"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000165970.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="Rop family plasmid primer RNA-binding protein"
/protein_id="WP_000165971.1"
/translation="MTKQEKTALNMAKFIKEQSLLLLDKLNELDMDTPADMCERLHED
AETLWQVMRDKLGEE"
gene 267..644
/locus_tag="CXM48_RS25080"
CDS 267..644
/locus_tag="CXM48_RS25080"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_004146445.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_000312627.1"
/translation="MAWVTVRQATELTGKARSSLYRDMAKGRVSYRTEADGGRVVDTS
ELIRVYGELRQDETHERDELRLSGETEKMASDALIAEIKALREEVAGLRQEMQSMRLL
EHKPETAETPAGTPRRWWPWGKR"
gene complement(706..1005)
/locus_tag="CXM48_RS25085"
CDS complement(706..1005)
/locus_tag="CXM48_RS25085"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_001146176.1"
/GO_component="GO:0110001 - toxin-antitoxin complex
[Evidence IEA]"
/GO_function="GO:0090729 - toxin activity [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type II toxin-antitoxin system RelE/ParE family
toxin"
/protein_id="WP_001146176.1"
/translation="MPYDVEWKQGAIEDVTTLFDYIAENSSLWDAQNVTDRVLAAADK
LADFPRLYEVDSRYGEDVRRISLMGQHVLYDVDDQTRKVRVLAVVGQRQNPHIVL"
gene complement(995..1258)
/locus_tag="CXM48_RS25090"
CDS complement(995..1258)
/locus_tag="CXM48_RS25090"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000072676.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_000072676.1"
/translation="MSNTTHYENANFLRELAESLPRILPEGGPDKAALLQRLANEELA
QAEYEDQVRAKVTAARADTRPGMTTEQLRQRLHGRYQELRDAV"
gene complement(1564..1983)
/locus_tag="CXM48_RS25095"
CDS complement(1564..1983)
/locus_tag="CXM48_RS25095"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_016247941.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="Exc2 family lipoprotein"
/protein_id="WP_001254601.1"
/translation="MRRSGSKLCLIAMITATATLTACAPKGSVEQHTRHYVYASDDGF
DPNFSTQKADTTRMMVPFFRQFWDMGAKDKATGKSRSDVQQRIQQFHSQEFLNSLQGT
TQFAGTDYRSKDLTPKKSRLLADTISAVYLDGYEGRQ"
gene 2386..4071
/locus_tag="CXM48_RS25100"
CDS 2386..4071
/locus_tag="CXM48_RS25100"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_010891190.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="colicin-like bacteriocin tRNase
domain-containing protein"
/protein_id="WP_193108039.1"
/translation="MSGGDGRGPGNSGLGHNGGQASGNVNGTSGKGGPSSGGGTDPNS
GPGWGTTHTPNGDIHNYNPGEFGNGGSKPGGNGGNSGNHSGSSGGGQSSATAMAFGLP
ALATPGDEGLALSVSGDALSAAVADVLAALKGPFKFGLWGIAIYGVLPSEIAKDDPKM
MSKIVTSLPADTVTETPVSSLPLDQATVSVTKRVADIVKDERQHIAVVTGRPMSVPVV
DAKPTKRPGVFSVSIPGLPSLQVSVPKGVPAAKAPPKGIIAEKGDSRPAGFTAGGNSR
EAVIRFPKESGQKPVYVSVTDVLTPAQVKQRLEEEKRRQQAWDAAHPEEGLKREYDKA
KAELDAEDKNIATLNSRIASTEKAIPGARAAVQEADKKVKEAEANKDDFVTYNPPHEY
GSGWQDQVRYLDKDIQNQNEKLKAAQTSLNEMNESLSRDKAALSGAMESRKQKEKKAK
DAENKLNEEKKKPRKGTKDYGHDYFPDPKTEDIKGLGELKEGKPKTPKQGGGGKRARW
YGDKKRKIYEWDSQHGELEGYRASDGEHLGAFDPKTGKQVKGPDPKRNIKKYL"
gene 4081..4338
/locus_tag="CXM48_RS25105"
CDS 4081..4338
/locus_tag="CXM48_RS25105"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_010891189.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="cloacin immunity family protein"
/protein_id="WP_004152553.1"
/translation="MGLKLHIHWFDKKTEEFKGGEYSKDFGDDGSVIESLGMPLKDNI
NNGWFDVEKSWVSILQPHFKNVIDISKFDYFVSFVYRDGNW"
gene 4423..4572
/locus_tag="CXM48_RS25110"
CDS 4423..4572
/locus_tag="CXM48_RS25110"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_010891188.1"
/GO_component="GO:0019867 - outer membrane [Evidence IEA]"
/GO_process="GO:0019835 - cytolysis [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="colicin release lysis protein"
/protein_id="WP_004152552.1"
/translation="MKKVKVVFLFILIFSGFLLVACQANYIRDVQGGTVAPSSSSELT
GIAVQ"
CONTIG join(JACOIW010000002.1:1..5691)
//