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Salmonella enterica subsp. enterica serovar Infantis str. CVM N42459 N42459_R1_contig_29, whole genome shotgun sequence

NCBI Reference Sequence: NZ_JABI01000022.1

FASTA Graphics 

LOCUS       NZ_JABI01000022        32725 bp    DNA     linear   CON 22-NOV-2023
DEFINITION  Salmonella enterica subsp. enterica serovar Infantis str. CVM
            N42459 N42459_R1_contig_29, whole genome shotgun sequence.
ACCESSION   NZ_JABI01000022 NZ_JABI01000000
VERSION     NZ_JABI01000022.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02442766
            Assembly: GCF_001952205.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Infantis str. CVM
            N42459
  ORGANISM  Salmonella enterica subsp. enterica serovar Infantis str. CVM
            N42459
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 32725)
  AUTHORS   Zhao,S., Liu,B.-T., Meng,J. and Li,C.
  TITLE     Genomic Characterisation of Salmonella enterica Subspecies enterica
            Serovar Infantis Isolates from retail meat, human and
            food-producing animals
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 32725)
  AUTHORS   Zhao,S., Liu,B.-T., Meng,J. and Li,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-JAN-2014) Division of Animal and Food Microbiology,
            Office of Research, Center for Veterinary Medicine, U.S. Food and
            Drug Administration, 8401 Muirkirk Road, Laurel, MD 20708, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABI01000022.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: CLC Genomic Workbench v. 6.0.5
            Genome Coverage       :: 79.0x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/22/2023 13:56:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,829
            CDSs (total)                      :: 4,716
            Genes (coding)                    :: 4,593
            CDSs (with protein)               :: 4,593
            Genes (RNA)                       :: 113
            rRNAs                             :: 8, 5, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 8 (5S)
            partial rRNAs                     :: 5, 6 (16S, 23S)
            tRNAs                             :: 79
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 123
            CDSs (without protein)            :: 123
            Pseudo Genes (ambiguous residues) :: 0 of 123
            Pseudo Genes (frameshifted)       :: 49 of 123
            Pseudo Genes (incomplete)         :: 85 of 123
            Pseudo Genes (internal stop)      :: 26 of 123
            Pseudo Genes (multiple problems)  :: 32 of 123
            Pseudo Genes (short protein)      :: 1 of 123
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..32725
                     /organism="Salmonella enterica subsp. enterica serovar
                     Infantis str. CVM N42459"
                     /mol_type="genomic DNA"
                     /submitter_seqid="N42459_R1_contig_29"
                     /strain="CVM N42459"
                     /serovar="Infantis"
                     /isolation_source="Ground turkey"
                     /sub_species="enterica"
                     /db_xref="taxon:1439851"
                     /geo_loc_name="USA: CO"
                     /collection_date="2012"
     gene            complement(<1..91)
                     /locus_tag="FJ519_RS09575"
                     /old_locus_tag="Y090_22510"
                     /old_locus_tag="Y090_RS09790"
     rRNA            complement(<1..91)
                     /locus_tag="FJ519_RS09575"
                     /old_locus_tag="Y090_22510"
                     /old_locus_tag="Y090_RS09790"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
     gene            715..2304
                     /gene="purH"
                     /locus_tag="FJ519_RS09580"
                     /old_locus_tag="Y090_22515"
                     /old_locus_tag="Y090_RS09800"
     CDS             715..2304
                     /gene="purH"
                     /locus_tag="FJ519_RS09580"
                     /old_locus_tag="Y090_22515"
                     /old_locus_tag="Y090_RS09800"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132841.1"
                     /GO_function="GO:0003937 - IMP cyclohydrolase activity
                     [Evidence IEA]; GO:0004643 -
                     phosphoribosylaminoimidazolecarboxamide formyltransferase
                     activity [Evidence IEA]"
                     /GO_process="GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="WP_001187490.1"
                     /translation="MQQRRPVRRALLSVSDKAGIIEFAQALSARGVELLSTGGTARLL
                     AEKGLAVTEVSDYTGFPEMMDGRVKTLHPKVHGGILGRRGQDDAIMEQHHIAPIDMVV
                     VNLYPFAETVAREGCSLEDAVENIDIGGPTMVRSAAKNHKDVAIVVKSSDYDAIIKEM
                     DANEGSLTLDTRFDLAIKAFEHTAAYDSMIANYFGSMVPAYHGESKEAAGRFPRTLNL
                     NFIKKQDMRYGENSHQQAAFYIEENVKEASVATAQQVQGKALSYNNIADTDAALECVK
                     EFNEPACVIVKHANPCGVAVSTSILDAYDRAYKTDPTSAFGGIIAFNRELDAETAQAI
                     ISRQFVEVIIAPSASEEALKITAAKQNVRVLTCGQWASRVPGLDFKRVNGGLLVQDRD
                     LGMVSEAELRVVSKRQPTEQELRDALFCWKVAKFVKSNAIVYAKENMTIGIGAGQMSR
                     VYSAKIAGIKAADEGLEVKGSAMASDAFFPFRDGIDAAAAVGVSCVIQPGGSIRDDEV
                     IAAADEHGIAMIFTDMRHFRH"
     gene            2320..3609
                     /gene="purD"
                     /locus_tag="FJ519_RS09585"
                     /old_locus_tag="Y090_22520"
                     /old_locus_tag="Y090_RS09805"
     CDS             2320..3609
                     /gene="purD"
                     /locus_tag="FJ519_RS09585"
                     /old_locus_tag="Y090_22520"
                     /old_locus_tag="Y090_RS09805"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463044.1"
                     /GO_function="GO:0004637 - phosphoribosylamine-glycine
                     ligase activity [Evidence IEA]"
                     /GO_process="GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]; GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="WP_023993915.1"
                     /translation="MKVLVIGNGGREHALAWKAAQSPLVGTVFVAPGNAGTALEPALQ
                     NVAIGVTDIPALLSFAQNEKIDLTIVGPEAPLVIGVVDAFRAAGLKIFGPTEGAAQLE
                     GSKAFTKDFLARHQIPTAEYQNFTEIEPALAYLREKGAPIVIKADGLAAGKGVIVAMT
                     LEEAEAAVHDMLAGNAFGDAGHRIVIEEFLDGEEASFIVMVDGEHVLPMATSQDHKRV
                     GNGDTGPNTGGMGAYSPAPVVTDEVHQRTMERIIWPTVKGMAAEGNTYTGFLYAGLMI
                     DKQGNPKVIEFNCRFGDPETQPIMLRMKSDLVDLCLAACDGKLDEKTSEWDERASLGV
                     VIAAGGYPGSYSTGDEIHGLPLEEVADGKVFHAGTKLADDDRVLTSGGRVLCATALGH
                     TVAEAQKRAYALMTDIRWDGSFSRNDIGWRAIEREQN"
     gene            complement(3606..4931)
                     /gene="zraR"
                     /locus_tag="FJ519_RS09590"
                     /old_locus_tag="Y090_22525"
                     /old_locus_tag="Y090_RS09810"
     CDS             complement(3606..4931)
                     /gene="zraR"
                     /locus_tag="FJ519_RS09590"
                     /old_locus_tag="Y090_22525"
                     /old_locus_tag="Y090_RS09810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463043.1"
                     /GO_function="GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /GO_process="GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]; GO:0006355 - regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54-dependent response regulator
                     transcription factor ZraR"
                     /protein_id="WP_000617928.1"
                     /translation="MIRGKIDILVVDDDVSHCTILQALLRGWGYNVALAYSGHDALAQ
                     VREKVFDLVLCDVRMAEMDGIATLKEIKALNPAIPILIMTAFSSVETAVEALKAGALD
                     YLIKPLDFDRLQETLEKALAHTRETGAELPSASAAQFGMIGSSPAMQHLLNEIAMVAP
                     SDATVLIHGDSGTGKELVARALHACSARSDKPLVTLNCAALNESLLESELFGHEKGAF
                     TGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVR
                     LIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERN
                     RKAVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLLTGEYISERELPLAIAATPIK
                     TEYSGEIQPLVDVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR"
     gene            complement(4937..6334)
                     /gene="zraS"
                     /locus_tag="FJ519_RS09595"
                     /old_locus_tag="Y090_22530"
                     /old_locus_tag="Y090_RS09815"
     CDS             complement(4937..6334)
                     /gene="zraS"
                     /locus_tag="FJ519_RS09595"
                     /old_locus_tag="Y090_22530"
                     /old_locus_tag="Y090_RS09815"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463042.1"
                     /GO_function="GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA]"
                     /GO_process="GO:0016310 - phosphorylation [Evidence IEA];
                     GO:0007165 - signal transduction [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     ZraS"
                     /protein_id="WP_001532197.1"
                     /translation="MSFIRLHKDAAATWLSRLLPAAIFILVGLFSIMVIRDYGRESAA
                     ARQTLLEKGNVLIRALESGTRVGMGMRMHHAQQQTLLEEMAGQPGVLWFAVTDAQGVI
                     ITHSNPGMVGKSLYSASEMHQLNPGPQERWRRVDVAANGETVPALEIYRQFQPLFGMR
                     GHGMRGHGMARSANDDEPAKQTIFIAFDASELAATQAREWRNTLIVLSALAAVLLATL
                     LAFFWHQRYQRSHRELLDAMKRKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERT
                     PAGGESHELAQVMAKEADRLNRVVSELLELVKPAHLTLQTVNLNDIITHSLNLVSQDA
                     QSREIQLRFTANETLKRIQADPDRLTQVLLNLYLNAIHAIGRQGTISVEAKESGTDRV
                     IITVTDSGKGIAPDQLEAIFTPYFTTKADGTGLGLAVVQNIIEQHGGAIKVKSIEGKG
                     AVFTIWLPVIARQQD"
     gene            6588..7043
                     /gene="zraP"
                     /locus_tag="FJ519_RS09600"
                     /old_locus_tag="Y090_22535"
                     /old_locus_tag="Y090_RS09820"
     CDS             6588..7043
                     /gene="zraP"
                     /locus_tag="FJ519_RS09600"
                     /old_locus_tag="Y090_22535"
                     /old_locus_tag="Y090_RS09820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc resistance sensor/chaperone ZraP"
                     /protein_id="WP_000828129.1"
                     /translation="MKRNNKSAIALIALSLLALSSGAAFAGHHWGNNDGMWQQGGSPL
                     TTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLG
                     QKLDEQRVKRDVAMAQAGIPRGAGMGYGGCGGYGGGYHRGGGHMGMGNW"
     gene            complement(7085..7777)
                     /locus_tag="FJ519_RS09605"
                     /old_locus_tag="Y090_22540"
                     /old_locus_tag="Y090_RS09825"
     CDS             complement(7085..7777)
                     /locus_tag="FJ519_RS09605"
                     /old_locus_tag="Y090_22540"
                     /old_locus_tag="Y090_RS09825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1481 domain-containing protein"
                     /protein_id="WP_001083931.1"
                     /translation="MNSFIEGARQPLLSVWRRAFLFSGALLLTACSHNASPPPFTASG
                     FAGDHGAVRIWRKDTNDEVHLLSVFSPWHSGSTTTSEYRWQGDTLSLIELNIYSKPPE
                     HIRARFDAHGELSFMQREVGGQKQQLSNDQIALYRYRAEQIRQTSDALRLGRVILRQG
                     RWHADHTVTTCEGETLKPDLDSWAISHIERRQNHSSVEVSVAWLEAPEGSQLLLVANS
                     DFCHWQPQAKTF"
     gene            complement(7789..8061)
                     /gene="hupA"
                     /locus_tag="FJ519_RS09610"
                     /old_locus_tag="Y090_22545"
                     /old_locus_tag="Y090_RS09830"
     CDS             complement(7789..8061)
                     /gene="hupA"
                     /locus_tag="FJ519_RS09610"
                     /old_locus_tag="Y090_22545"
                     /old_locus_tag="Y090_RS09830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017460010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid-associated protein HU-alpha"
                     /protein_id="WP_001044509.1"
                     /translation="MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQL
                     VGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK"
     gene            complement(8248..8838)
                     /locus_tag="FJ519_RS09615"
                     /old_locus_tag="Y090_22550"
                     /old_locus_tag="Y090_RS09835"
     CDS             complement(8248..8838)
                     /locus_tag="FJ519_RS09615"
                     /old_locus_tag="Y090_22550"
                     /old_locus_tag="Y090_RS09835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjaG family protein"
                     /protein_id="WP_000940092.1"
                     /translation="MLQNPIHLRLERLESWQHVTFMACLCERMYPNYAMFCKQTEFGD
                     GQIYRRILDLIWETLTVKDAKVNFDSQLEKFEEAIPAADDYDLYGVYPAIDACVALSE
                     LMHSRLSGETLEHAIEVSKTSITTVAMLEMTQAGREMTDEELKTNPAVEQEWDIQWEI
                     FRLLADCEERDIELIKGLRADLREAGESNIGINFQQ"
     gene            complement(8880..9551)
                     /gene="nfi"
                     /locus_tag="FJ519_RS09620"
                     /old_locus_tag="Y090_22555"
                     /old_locus_tag="Y090_RS09840"
     CDS             complement(8880..9551)
                     /gene="nfi"
                     /locus_tag="FJ519_RS09620"
                     /old_locus_tag="Y090_22555"
                     /old_locus_tag="Y090_RS09840"
                     /EC_number="3.1.21.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463037.1"
                     /GO_function="GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /GO_process="GO:0006281 - DNA repair [Evidence IEA]"
                     /note="cleaves DNA at apurinic or apyrimidinic sites;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease V"
                     /protein_id="WP_023993916.1"
                     /translation="MDLASLRAQQIELASSVCREDRLDKDPPAFIGGADVGFEQGGEV
                     TRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEQLSQKPDLLFV
                     DGHGISHPRRLGVASHFGLLVDVPTIGVAKKRLCGKFEPLSAEPGALSPLMDKGEQLA
                     WVWRSKARCNPLFIATGHRISTDSALAWVQRCMKGYRLPEPTRWADAVASGRPAFVRW
                     QEIQR"
     gene            complement(9561..10625)
                     /gene="hemE"
                     /locus_tag="FJ519_RS09625"
                     /old_locus_tag="Y090_22560"
                     /old_locus_tag="Y090_RS09845"
     CDS             complement(9561..10625)
                     /gene="hemE"
                     /locus_tag="FJ519_RS09625"
                     /old_locus_tag="Y090_22560"
                     /old_locus_tag="Y090_RS09845"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463036.2"
                     /GO_function="GO:0004853 - uroporphyrinogen decarboxylase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="WP_000137625.1"
                     /translation="MTELKNDRYLRALLRQPVDVTPVWMMRQAGRYLPEYKATRAQAG
                     DFMSLCKNAELACEVTLQPLRRYPLDAAILFSDILTIPDAMGLGLYFEAGEGPRFTAP
                     VTCKGDVDKLPIPDPEDELGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGS
                     SKAFTVIKKMMYADPQALHLLLDKLAKSVTLYLNAQIKAGAQSVMIFDTWGGVLTGRD
                     YQQFSLYYMHKIVDGLLRENDGRRVPVTLFTKGGGQWLEAMAETGCDALGLDWTTDIA
                     DARRRVGHKVALQGNMDPSMLYAPPARIEDEVATILAGFGQGEGHVFNLGHGIHQDVP
                     PEHAGAFVEAVHRLSAQYHN"
     gene            complement(10666..11439)
                     /gene="nudC"
                     /locus_tag="FJ519_RS09630"
                     /old_locus_tag="Y090_22565"
                     /old_locus_tag="Y090_RS09850"
     CDS             complement(10666..11439)
                     /gene="nudC"
                     /locus_tag="FJ519_RS09630"
                     /old_locus_tag="Y090_22565"
                     /old_locus_tag="Y090_RS09850"
                     /EC_number="3.6.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463035.1"
                     /GO_function="GO:0016787 - hydrolase activity [Evidence
                     IEA]; GO:0000210 - NAD+ diphosphatase activity [Evidence
                     IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) diphosphatase"
                     /protein_id="WP_000373960.1"
                     /translation="MDRIIEKLESGWWIVSHEQKLWLPYGELPHGLAANFDLVGQRAL
                     RIGEWQGEPVWLVLQHRRHDMGSVRQVIDQDAGLFQLAGRGVQLAEFYRSHKFCGYCG
                     HPMHPSKTEWAMLCSHCRERYYPQIAPCIIVAIRREDSILLARHVRHRNGVHTVLAGF
                     VEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPFPQSLMTAFMAEYDSGEIVIDPK
                     ELLEANWYRYDDLPLLPPPGTVARRLIEDTVAMCRAEYD"
     gene            11532..12020
                     /gene="rsd"
                     /locus_tag="FJ519_RS09635"
                     /old_locus_tag="Y090_22570"
                     /old_locus_tag="Y090_RS09855"
     CDS             11532..12020
                     /gene="rsd"
                     /locus_tag="FJ519_RS09635"
                     /old_locus_tag="Y090_22570"
                     /old_locus_tag="Y090_RS09855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463034.1"
                     /GO_process="GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma D regulator"
                     /protein_id="WP_000934315.1"
                     /translation="MLNQLENLTERVGGSNKLVDRWLDVRKHLLVAYYNLVGIKPGKE
                     SYMRLNEKALDDFCQSLVDYLSAGHFSIYERILHKLEGNGQLLHAAKIWPLLEDNTQR
                     IMDYYDTSLETAIDHDNCLEFQQALSDIGEALEARFVLEDKLIMLVFDAMHDGARVKR
                     PA"
     regulatory      12073..12297
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            12384..14279
                     /gene="thiC"
                     /locus_tag="FJ519_RS09640"
                     /old_locus_tag="Y090_22575"
                     /old_locus_tag="Y090_RS09860"
     CDS             12384..14279
                     /gene="thiC"
                     /locus_tag="FJ519_RS09640"
                     /old_locus_tag="Y090_22575"
                     /old_locus_tag="Y090_RS09860"
                     /EC_number="4.1.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463033.1"
                     /GO_function="GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /GO_process="GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="WP_023993917.1"
                     /translation="MSTTTLTRREQRAKAQHFIDTLEGTAFPNSKRIYVTGSQHDIRV
                     PMREIQLSPTLIGGSKDNPQFEENEAVPVYDTSGPYGDPEVAINVQQGLAKLRQPWID
                     ARNDSEELDDRSSAYTRERLADDGLDDLRFTGLLTPKRAKAGKRVTQLHYARKGIVTP
                     EMEFIAIRENMGRERIRSEVLRHQHPGMSFGARLPENITPEFVRDEVAAGRAIIPANI
                     NHPESEPMIIGRNFLVKVNANIGNSAVTSSIEEEVEKLVWSTRWGADTVMDLSTGRYI
                     HETREWILRNSPVPIGTVPIYQALEKVNGIAEDLTWEAFRDTLLEQAEQGVDYFTIHA
                     GVLLRYVPMTAKRLTGIVSRGGSIMAKWCLSHHKENFLFEHFREICEICAAYDVSLSL
                     GDGLRPGSIQDANDEAQFSELHTLGELTKIAWEYDVQVMIEGPGHVPMHMIQRNMTEE
                     LESCHEAPFYTLGPLTTDIAPGYDHFTSGIGAAMIGWFGCAMLCYVTPKEHLGLPNKE
                     DVKQGLITYKIAAHAADLAKGHPGAQIRDNAMSKARFEFRWEDQFNLALDPFTARAYH
                     DETLPQESGKVAHFCSMCGPKFCSMKISQEVRDYAAAQAIEVGMADMSENFRAKGGEI
                     YLKREEA"
     gene            14279..14914
                     /gene="thiE"
                     /locus_tag="FJ519_RS09645"
                     /old_locus_tag="Y090_22580"
                     /old_locus_tag="Y090_RS09865"
     CDS             14279..14914
                     /gene="thiE"
                     /locus_tag="FJ519_RS09645"
                     /old_locus_tag="Y090_22580"
                     /old_locus_tag="Y090_RS09865"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463032.1"
                     /GO_function="GO:0004789 - thiamine-phosphate
                     diphosphorylase activity [Evidence IEA]"
                     /GO_process="GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="WP_023993918.1"
                     /translation="MYQPDFPTVPFRLGLYPVVDSVAWIERLLEAGVRTIQLRIKDKR
                     DEEVEADVIAAIALGRRYNARLFINDYWRLAIKHRAYGVHLGQEDLETTDLKAIQAAG
                     LRLGVSTHNDMEIDVALAAKPSYIALGHVFPTQTKQMPSAPQGLAQLASHIERLADYP
                     TVAIGGISLERAPAVLATGVGSVAVVSAITQAADWRAATAQLLDIAGVGDE"
     gene            14907..15665
                     /locus_tag="FJ519_RS09650"
                     /old_locus_tag="Y090_22585"
                     /old_locus_tag="Y090_RS09870"
     CDS             14907..15665
                     /locus_tag="FJ519_RS09650"
                     /old_locus_tag="Y090_22585"
                     /old_locus_tag="Y090_RS09870"
                     /EC_number="2.7.7.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463031.1"
                     /GO_function="GO:0008641 - ubiquitin-like modifier
                     activating enzyme activity [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HesA/MoeB/ThiF family protein"
                     /protein_id="WP_000999764.1"
                     /translation="MNDRDFMRYSRQILLGDIAIEGQQKLLASHVLIVGLGGLGSPAA
                     LYLAGAGIGTLTLADDDDVHLSNLQRQILFTTDDIAHSKSQVAQQRLAQLNPGSELIV
                     LQQRLTGDVLKNAVAHADVVLDCTDNMATRQEINAACVALNTPLISASAVGFGGQLMV
                     LTPPWEQGCYRCLWPDDVEPERNCRTAGIVGPVVGVMGTLQALEAIKLLSGIETPSGE
                     LRLFDGKTSQWRSLALRRASGCPVCGGQHADSVQ"
     gene            15646..15846
                     /gene="thiS"
                     /locus_tag="FJ519_RS09655"
                     /old_locus_tag="Y090_22590"
                     /old_locus_tag="Y090_RS09875"
     CDS             15646..15846
                     /gene="thiS"
                     /locus_tag="FJ519_RS09655"
                     /old_locus_tag="Y090_22590"
                     /old_locus_tag="Y090_RS09875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463030.1"
                     /GO_function="GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /GO_process="GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="WP_001166846.1"
                     /translation="MQIQFNDEPMQCAEGQTVSSLLATLNQLKPGAALALNQQILPRE
                     QWRQHIVQEGDQILLFQVIAGG"
     gene            15848..16618
                     /gene="thiG"
                     /locus_tag="FJ519_RS09660"
                     /old_locus_tag="Y090_22595"
                     /old_locus_tag="Y090_RS09880"
     CDS             15848..16618
                     /gene="thiG"
                     /locus_tag="FJ519_RS09660"
                     /old_locus_tag="Y090_22595"
                     /old_locus_tag="Y090_RS09880"
                     /EC_number="2.8.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="WP_000944119.1"
                     /translation="MLRIADKTFDSHLFTGTGKFASSQLMVKAIRASGSQLVTLAMKR
                     VDLRQHNDAILAPLIEAGVTLLPNTSGAKTAEEAIFAAQLAREALGTNWLKLEIHPDA
                     RWLLPDPIETLKAAEALVKQGFVVLPYCGADPVLCKRLEEVGCAAVMPLGAPIGSNQG
                     LETRAMLEIIIQQATVPVVVDAGIGVPSQAAQALEMGADAVLVNTAIAVADDPVRMAT
                     AFRLAVEAGLLARQAVPGNRSTYASATSPLTGFLEALA"
     gene            16615..17748
                     /gene="thiH"
                     /locus_tag="FJ519_RS09665"
                     /old_locus_tag="Y090_22600"
                     /old_locus_tag="Y090_RS09885"
     CDS             16615..17748
                     /gene="thiH"
                     /locus_tag="FJ519_RS09665"
                     /old_locus_tag="Y090_22600"
                     /old_locus_tag="Y090_RS09885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463028.1"
                     /GO_function="GO:0016829 - lyase activity [Evidence IEA];
                     GO:1904047 - S-adenosyl-L-methionine binding [Evidence
                     IEA]"
                     /GO_process="GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-iminoacetate synthase ThiH"
                     /protein_id="WP_023196055.1"
                     /translation="MKTFTDRWRQLEWDDIRLRINGKTTADVERALNAPQLSRDDLMA
                     LLSPAAADYLEPLAQRAQRLTRQRFGNTVSFYVPLYLSNLCANDCTYCGFSMSNRIKR
                     KTLDDVDIQRECDAIRELGFEHLLLVTGEHQAKVGMDYFRRHLPAIRRQFSSLHMEVQ
                     PLATEEYAELKTLGLDGVMVYQETYHEPVYAQHHLRGKKQDFFWRLETPDRLGRAGID
                     KIGLGALIGLSDSWRVDCYMVAEHLLWMQKQYWQSRYSISFPRLRPCTGGVEPTSVMD
                     EKQLVQTICAFRLLAPEIELSLSTRESPWFRDNVIPLAINNVSAFSKTQPGGYADDHP
                     ELEQFSPHDARRPETVASALSAQGLQPVWKDWDSWLGRASQTR"
     gene            complement(17969..18997)
                     /locus_tag="FJ519_RS09670"
                     /old_locus_tag="Y090_22605"
                     /old_locus_tag="Y090_RS09890"
     CDS             complement(17969..18997)
                     /locus_tag="FJ519_RS09670"
                     /old_locus_tag="Y090_22605"
                     /old_locus_tag="Y090_RS09890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000400600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector arginine
                     glycosyltransferase SseK1"
                     /protein_id="WP_000400592.1"
                     /translation="MEHLIVMIPPLNRYVPALSKNELVKTVTDRDIQFTSFNGKDYPL
                     CFLDEKTPLLFQWFERNPARFGKNDIPIINTEKNPYLNNIIKAATIEKERLIGIFVDG
                     DFFPGQKDAFSKLEYDYENIKVIYRNDIDFSMYDKKLSEIYMENISKQESMPEEKRDY
                     HLLQLLKKELSDIQEGNDSLIKSYLLDKGYGWFDFYRNMAMLKAGQLFLEADKVGCYD
                     LSTNSGCIYLDADMIITEKLGGIYIPDGIAVHVERIDGRASMENGIIAVDRNNHPALL
                     AGLEIMHTKFDADPYSDGVCNGIRKHFNYSLNEDYNSFCDFIEFKHDNIIMNTSQFTQ
                     SSWARHVQ"
     gene            19378..19721
                     /locus_tag="FJ519_RS09680"
                     /old_locus_tag="Y090_22610"
                     /old_locus_tag="Y090_RS09900"
                     /pseudo
     CDS             19378..19721
                     /locus_tag="FJ519_RS09680"
                     /old_locus_tag="Y090_22610"
                     /old_locus_tag="Y090_RS09900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463025.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cytoplasmic protein"
     gene            complement(19723..20049)
                     /locus_tag="FJ519_RS09685"
                     /old_locus_tag="Y090_22615"
                     /old_locus_tag="Y090_RS09905"
     CDS             complement(19723..20049)
                     /locus_tag="FJ519_RS09685"
                     /old_locus_tag="Y090_22615"
                     /old_locus_tag="Y090_RS09905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015675457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001654075.1"
                     /translation="MLDTEFRVACLQGKKMPAIISLIYLMFSLLVFTKKITISNVLSA
                     FLLFLSLYILHHKSLLIFIYCLIIIVATVILHQVKTSADKKAVFYFSMPCWLLILSVI
                     INLMNK"
     gene            complement(20091..24314)
                     /gene="rpoC"
                     /locus_tag="FJ519_RS09690"
                     /old_locus_tag="Y090_22620"
                     /old_locus_tag="Y090_RS09910"
     CDS             complement(20091..24314)
                     /gene="rpoC"
                     /locus_tag="FJ519_RS09690"
                     /old_locus_tag="Y090_22620"
                     /old_locus_tag="Y090_RS09910"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463023.1"
                     /GO_component="GO:0000345 - cytosolic DNA-directed RNA
                     polymerase complex [Evidence IEA]"
                     /GO_function="GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA]"
                     /GO_process="GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="WP_000653965.1"
                     /translation="MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETI
                     NYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERM
                     GHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQIL
                     TEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECETLREELNETNSETKRKKLT
                     KRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRN
                     NRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGK
                     QGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLAT
                     TIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLH
                     PLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVL
                     GLYYMTRDCVNAKGEGMVLTGPKEAERIYRAGLASLHARVKVRITEYEKDENGEFVAH
                     TSLKDTTVGRAILWMIVPKGLPFSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQT
                     MYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKV
                     IDIWAAANDRVSKAMMDNLQTETVINRDGQEEQQVSFNSIYMMADSGARGSAAQIRQL
                     AGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTR
                     RLVDVAQDLVVTEDDCGTHEGILMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADI
                     LVPRNTLLHEQWCDLLEANSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEA
                     IGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGK
                     LVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGEQVAGGETVANWDPHTMPVITE
                     VSGFIRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTTGGKDLRPALKIVDAQGNDV
                     LIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFE
                     ARRPKEPAILAEIAGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV
                     ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR
                     KATIESAGSSDFLEGEQVEYSRVKIANRELEANGKVGATFSRDLLGITKASLATESFI
                     SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEQ
                     PATPQVTAEDASASLAELLNAGLGGSDNE"
     gene            complement(24391..28419)
                     /gene="rpoB"
                     /locus_tag="FJ519_RS09695"
                     /old_locus_tag="Y090_22625"
                     /old_locus_tag="Y090_RS09915"
     CDS             complement(24391..28419)
                     /gene="rpoB"
                     /locus_tag="FJ519_RS09695"
                     /old_locus_tag="Y090_22625"
                     /old_locus_tag="Y090_RS09915"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004870488.1"
                     /GO_component="GO:0000345 - cytosolic DNA-directed RNA
                     polymerase complex [Evidence IEA]"
                     /GO_function="GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA]"
                     /GO_process="GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="WP_000263105.1"
                     /translation="MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPE
                     GQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRL
                     VIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSD
                     KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTE
                     QILDLFFEKVVFEIRDNKLQMELIPERLRGETASFDIEANGKVYVEKGRRITARHIRQ
                     LEKDDIKHIEVPVEYIAGKVVSKDYVDESTGELICAANMELSLDLLAKLSQSGHKRIE
                     TLFTNDLDHGPYISETVRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSE
                     DRYDLSAVGRMKFNRSLLRDEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGN
                     RRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGS
                     SQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEG
                     PNIGLINSLSVYAQTNEYGFLETPYRRVVDGVVTDEIHYLSAIEEGNYVIAQANSNLD
                     DEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMG
                     ANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGTVQYVDASRIVIKVNEDE
                     MYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQ
                     NMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPN
                     VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVK
                     DSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLF
                     SRIRAVLVSGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLE
                     AKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYD
                     ENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQ
                     RAYDLGADVRQKVDLSTFSDDEVLRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDL
                     PTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGK
                     AQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
                     ESFNVLLKEIRSLGINIELEDE"
     gene            complement(28737..29102)
                     /gene="rplL"
                     /locus_tag="FJ519_RS09700"
                     /old_locus_tag="Y090_22630"
                     /old_locus_tag="Y090_RS09920"
     CDS             complement(28737..29102)
                     /gene="rplL"
                     /locus_tag="FJ519_RS09700"
                     /old_locus_tag="Y090_22630"
                     /old_locus_tag="Y090_RS09920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005122872.1"
                     /GO_component="GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA]; GO:0000315 - organellar large
                     ribosomal subunit [Evidence IEA]"
                     /GO_function="GO:0003735 - structural constituent of
                     ribosome [Evidence IEA]"
                     /GO_process="GO:0006412 - translation [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="WP_000028882.1"
                     /translation="MSITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAG
                     PAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKD
                     DAEALKKSLEEAGAEVEVK"
     gene            complement(29169..29666)
                     /gene="rplJ"
                     /locus_tag="FJ519_RS09705"
                     /old_locus_tag="Y090_22635"
                     /old_locus_tag="Y090_RS09925"
     CDS             complement(29169..29666)
                     /gene="rplJ"
                     /locus_tag="FJ519_RS09705"
                     /old_locus_tag="Y090_22635"
                     /old_locus_tag="Y090_RS09925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002438625.1"
                     /GO_component="GO:0015934 - large ribosomal subunit
                     [Evidence IEA]"
                     /GO_function="GO:0003735 - structural constituent of
                     ribosome [Evidence IEA]"
                     /GO_process="GO:0006412 - translation [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="WP_001207203.1"
                     /translation="MALNLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKA
                     GREAGVYMRVVRNTLLRRVVEGTQFECLKDTFVGPTLIAYSMEHPGAAARLFKEFAKA
                     NAKFEVKAAAFEGELIPASQIDRLATLPTYEEAIARLMATMKEASAGKLVRTLAAVRD
                     AKEAA"
     gene            complement(30086..30790)
                     /gene="rplA"
                     /locus_tag="FJ519_RS09710"
                     /old_locus_tag="Y090_22640"
                     /old_locus_tag="Y090_RS09935"
     CDS             complement(30086..30790)
                     /gene="rplA"
                     /locus_tag="FJ519_RS09710"
                     /old_locus_tag="Y090_22640"
                     /old_locus_tag="Y090_RS09935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463019.1"
                     /GO_component="GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA]; GO:0000311 - plastid large
                     ribosomal subunit [Evidence IEA]"
                     /GO_function="GO:0003735 - structural constituent of
                     ribosome [Evidence IEA]"
                     /GO_process="GO:0006412 - translation [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="WP_001096676.1"
                     /translation="MAKLTKRMRVIREKVDATKQYDINEAIALLKELATAKFNESVDV
                     AVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGPNAEAAKAAGAELVGMEDLAD
                     QIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQ
                     VRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPSQAKGVYIKKVSISTTM
                     GAGVAVDQAGLSASAN"
     gene            complement(30794..31222)
                     /gene="rplK"
                     /locus_tag="FJ519_RS09715"
                     /old_locus_tag="Y090_22645"
                     /old_locus_tag="Y090_RS09940"
     CDS             complement(30794..31222)
                     /gene="rplK"
                     /locus_tag="FJ519_RS09715"
                     /old_locus_tag="Y090_22645"
                     /old_locus_tag="Y090_RS09940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006121495.1"
                     /GO_component="GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA]; GO:0000315 - organellar large
                     ribosomal subunit [Evidence IEA]"
                     /GO_function="GO:0003735 - structural constituent of
                     ribosome [Evidence IEA]"
                     /GO_process="GO:0006412 - translation [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="WP_001085926.1"
                     /translation="MAKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNA
                     KTDSIEKGLPIPVVITVYADRSFTFVTKTPPAAVLLKKAAGIKSGSGKPNKDKVGKIS
                     RAQLQEIAQTKAADMTGADIEAMTRSIEGTARSMGLVVED"
     gene            complement(31380..31925)
                     /gene="nusG"
                     /locus_tag="FJ519_RS09720"
                     /old_locus_tag="Y090_22650"
                     /old_locus_tag="Y090_RS09945"
     CDS             complement(31380..31925)
                     /gene="nusG"
                     /locus_tag="FJ519_RS09720"
                     /old_locus_tag="Y090_22650"
                     /old_locus_tag="Y090_RS09945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005280494.1"
                     /GO_process="GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="WP_001287521.1"
                     /translation="MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEELFGEVMV
                     PTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAP
                     ISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKV
                     SVSIFGRATPVELDFSQVEKA"
     gene            complement(31927..32310)
                     /gene="secE"
                     /locus_tag="FJ519_RS09725"
                     /old_locus_tag="Y090_22655"
                     /old_locus_tag="Y090_RS09950"
     CDS             complement(31927..32310)
                     /gene="secE"
                     /locus_tag="FJ519_RS09725"
                     /old_locus_tag="Y090_22655"
                     /old_locus_tag="Y090_RS09950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007665874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="WP_001275691.1"
                     /translation="MSANTEAQGSGRGLEAMKWIVVAILLIVAIVGNYLYRDMMLPLR
                     ALAVVILIAAAGGVALLTTKGKATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTA
                     VMSLILWGLDGILVRLVSFITGLRF"
     gene            complement(32540..>32725)
                     /gene="tuf"
                     /locus_tag="FJ519_RS09730"
                     /old_locus_tag="Y090_RS09955"
                     /pseudo
     CDS             complement(32540..>32725)
                     /gene="tuf"
                     /locus_tag="FJ519_RS09730"
                     /old_locus_tag="Y090_RS09955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312217.1"
                     /note="EF-Tu; promotes GTP-dependent binding of
                     aminoacyl-tRNA to the A-site of ribosomes during protein
                     biosynthesis; when the tRNA anticodon matches the mRNA
                     codon, GTP hydrolysis results; the inactive EF-Tu-GDP
                     leaves the ribosome and release of GDP is promoted by
                     elongation factor Ts; many prokaryotes have two copies of
                     the gene encoding EF-Tu; incomplete; too short partial
                     abutting assembly gap; missing N-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
CONTIG      join(JABI01000022.1:1..32725)
//
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