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NCBI Reference Sequence: NZ_JAAITR010000092.1
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LOCUS NZ_JAAITR010000092 421 bp DNA linear CON 29-FEB-2024 DEFINITION Fusicatenibacter saccharivorans strain MSK.13.41 NODE_105_length_421_cov_201.32, whole genome shotgun sequence. ACCESSION NZ_JAAITR010000092 NZ_JAAITR010000000 VERSION NZ_JAAITR010000092.1 DBLINK BioProject: PRJNA224116 BioSample: SAMN14067723 Assembly: GCF_013301115.1 KEYWORDS WGS; RefSeq. SOURCE Fusicatenibacter saccharivorans ORGANISM Fusicatenibacter saccharivorans Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter. REFERENCE 1 (bases 1 to 421) AUTHORS Sorbara,M.T., Littmann,E.R., Fontana,E., Moody,T.U., Kohout,C.E., Gjonbalaj,M., Eaton,V., Seok,R., Leiner,I.M. and Pamer,E.G. TITLE Functional and Genomic Variation between Human-Derived Isolates of Lachnospiraceae Reveals Inter- and Intra-Species Diversity JOURNAL Cell Host Microbe 28 (1), 134-146 (2020) PUBMED 32492369 REFERENCE 2 (bases 1 to 421) AUTHORS Littmann,E. and Sorbara,M. TITLE Direct Submission JOURNAL Submitted (10-FEB-2020) Duchossois Family Institute, University of Chicago, 900 E 57th Street, Chicago, IL 60615, USA COMMENT REFSEQ INFORMATION: The reference sequence is identical to JAAITR010000092.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 2019 Assembly Method :: SPAdes v. JUN-2019 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 100x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/29/2024 01:44:08 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,702 CDSs (total) :: 3,637 Genes (coding) :: 3,534 CDSs (with protein) :: 3,534 Genes (RNA) :: 65 rRNAs :: 1, 1, 2 (5S, 16S, 23S) complete rRNAs :: 1, 1 (5S, 16S) partial rRNAs :: 2 (23S) tRNAs :: 57 ncRNAs :: 4 Pseudo Genes (total) :: 103 CDSs (without protein) :: 103 Pseudo Genes (ambiguous residues) :: 0 of 103 Pseudo Genes (frameshifted) :: 12 of 103 Pseudo Genes (incomplete) :: 94 of 103 Pseudo Genes (internal stop) :: 11 of 103 Pseudo Genes (multiple problems) :: 13 of 103 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..421 /organism="Fusicatenibacter saccharivorans" /mol_type="genomic DNA" /submitter_seqid="NODE_105_length_421_cov_201.32" /strain="MSK.13.41" /isolation_source="fecal sample" /host="Homo sapiens" /db_xref="taxon:1150298" /geo_loc_name="USA: New York" gene complement(<1..160) /locus_tag="G5B02_RS18335" /old_locus_tag="G5B02_18430" CDS complement(<1..160) /locus_tag="G5B02_RS18335" /old_locus_tag="G5B02_18430" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002569225.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DUF3847 domain-containing protein" /protein_id="WP_173816699.1" /translation="MPDTSKLGKLNRELEKSEKKLRKAINDEKALQHQLKQLTRKERT HRLCTRGGM" gene complement(153..>421) /locus_tag="G5B02_RS18340" /old_locus_tag="G5B02_18435" CDS complement(153..>421) /locus_tag="G5B02_RS18340" /old_locus_tag="G5B02_18435" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_009251547.1" /GO_function="GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]" /GO_process="GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=3 /transl_table=11 /product="DeoR family transcriptional regulator" /protein_id="WP_173816700.1" /translation="PVSSTAKVMYCRMLDAMLFRGQADENGILFVCFPITAIAAVLSR SLMTVKRSLNELETAGLIMRVRQGVGEPNRIYVLIPGKEGATLA" CONTIG join(JAAITR010000092.1:1..421) //
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