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Fusicatenibacter saccharivorans strain MSK.13.41 NODE_105_length_421_cov_201.32, whole genome shotgun sequence

NCBI Reference Sequence: NZ_JAAITR010000092.1

FASTA Graphics 

LOCUS       NZ_JAAITR010000092       421 bp    DNA     linear   CON 29-FEB-2024
DEFINITION  Fusicatenibacter saccharivorans strain MSK.13.41
            NODE_105_length_421_cov_201.32, whole genome shotgun sequence.
ACCESSION   NZ_JAAITR010000092 NZ_JAAITR010000000
VERSION     NZ_JAAITR010000092.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14067723
            Assembly: GCF_013301115.1
KEYWORDS    WGS; RefSeq.
SOURCE      Fusicatenibacter saccharivorans
  ORGANISM  Fusicatenibacter saccharivorans
            Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales;
            Lachnospiraceae; Fusicatenibacter.
REFERENCE   1  (bases 1 to 421)
  AUTHORS   Sorbara,M.T., Littmann,E.R., Fontana,E., Moody,T.U., Kohout,C.E.,
            Gjonbalaj,M., Eaton,V., Seok,R., Leiner,I.M. and Pamer,E.G.
  TITLE     Functional and Genomic Variation between Human-Derived Isolates of
            Lachnospiraceae Reveals Inter- and Intra-Species Diversity
  JOURNAL   Cell Host Microbe 28 (1), 134-146 (2020)
   PUBMED   32492369
REFERENCE   2  (bases 1 to 421)
  AUTHORS   Littmann,E. and Sorbara,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-FEB-2020) Duchossois Family Institute, University of
            Chicago, 900 E 57th Street, Chicago, IL 60615, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAITR010000092.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2019
            Assembly Method        :: SPAdes v. JUN-2019
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/29/2024 01:44:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,702
            CDSs (total)                      :: 3,637
            Genes (coding)                    :: 3,534
            CDSs (with protein)               :: 3,534
            Genes (RNA)                       :: 65
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 57
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 103
            CDSs (without protein)            :: 103
            Pseudo Genes (ambiguous residues) :: 0 of 103
            Pseudo Genes (frameshifted)       :: 12 of 103
            Pseudo Genes (incomplete)         :: 94 of 103
            Pseudo Genes (internal stop)      :: 11 of 103
            Pseudo Genes (multiple problems)  :: 13 of 103
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..421
                     /organism="Fusicatenibacter saccharivorans"
                     /mol_type="genomic DNA"
                     /submitter_seqid="NODE_105_length_421_cov_201.32"
                     /strain="MSK.13.41"
                     /isolation_source="fecal sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:1150298"
                     /geo_loc_name="USA: New York"
     gene            complement(<1..160)
                     /locus_tag="G5B02_RS18335"
                     /old_locus_tag="G5B02_18430"
     CDS             complement(<1..160)
                     /locus_tag="G5B02_RS18335"
                     /old_locus_tag="G5B02_18430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002569225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3847 domain-containing protein"
                     /protein_id="WP_173816699.1"
                     /translation="MPDTSKLGKLNRELEKSEKKLRKAINDEKALQHQLKQLTRKERT
                     HRLCTRGGM"
     gene            complement(153..>421)
                     /locus_tag="G5B02_RS18340"
                     /old_locus_tag="G5B02_18435"
     CDS             complement(153..>421)
                     /locus_tag="G5B02_RS18340"
                     /old_locus_tag="G5B02_18435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009251547.1"
                     /GO_function="GO:0003700 - DNA-binding transcription
                     factor activity [Evidence IEA]"
                     /GO_process="GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DeoR family transcriptional regulator"
                     /protein_id="WP_173816700.1"
                     /translation="PVSSTAKVMYCRMLDAMLFRGQADENGILFVCFPITAIAAVLSR
                     SLMTVKRSLNELETAGLIMRVRQGVGEPNRIYVLIPGKEGATLA"
CONTIG      join(JAAITR010000092.1:1..421)
//
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