Warning: The NCBI web site requires JavaScript to function. more...
An official website of the United States government
The .gov means it's official. Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you're on a federal government site.
The site is secure. The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.
Download features.
Download gene features.
NCBI Reference Sequence: NZ_FMPX01000030.1
FASTA Graphics
LOCUS NZ_FMPX01000030 20292 bp DNA linear CON 06-DEC-2023 DEFINITION Staphylococcus aureus strain GKP138-6, whole genome shotgun sequence. ACCESSION NZ_FMPX01000030 NZ_FMPX01000000 VERSION NZ_FMPX01000030.1 DBLINK BioProject: PRJNA224116 BioSample: SAMEA1708859 Assembly: GCF_900098135.1 KEYWORDS WGS; RefSeq. SOURCE Staphylococcus aureus ORGANISM Staphylococcus aureus Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus. REFERENCE 1 CONSRTM Pathogen Informatics TITLE Direct Submission JOURNAL Submitted (28-SEP-2016) WTSI, Pathogen Informatics, Wellcome Trust Sanger Institute, CB10 1SA, United Kingdom COMMENT REFSEQ INFORMATION: The reference sequence is identical to FMPX01000030.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 12/06/2023 02:59:13 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,850 CDSs (total) :: 2,791 Genes (coding) :: 2,705 CDSs (with protein) :: 2,705 Genes (RNA) :: 59 rRNAs :: 3, 1, 1 (5S, 16S, 23S) complete rRNAs :: 3, 1, 1 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 86 CDSs (without protein) :: 86 Pseudo Genes (ambiguous residues) :: 0 of 86 Pseudo Genes (frameshifted) :: 46 of 86 Pseudo Genes (incomplete) :: 42 of 86 Pseudo Genes (internal stop) :: 18 of 86 Pseudo Genes (multiple problems) :: 17 of 86 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..20292 /organism="Staphylococcus aureus" /mol_type="genomic DNA" /strain="GKP138-6" /serovar="NA" /isolation_source="Bulk milk" /db_xref="taxon:1280" /geo_loc_name="United Kingdom" /collection_date="2012" /note="contig: ERS189633SCcontig000030" gene complement(<1..69) /locus_tag="BJS49_RS13940" CDS complement(<1..69) /locus_tag="BJS49_RS13940" /inference="COORDINATES: similar to AA sequence:RefSeq:YP_500034.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DUF2951 family protein" /protein_id="WP_141724529.1" /translation="MFGFTKRHEQDWRLTRLEENDKT" gene complement(110..283) /locus_tag="BJS49_RS13945" /old_locus_tag="SAMEA1708859_02639" CDS complement(110..283) /locus_tag="BJS49_RS13945" /old_locus_tag="SAMEA1708859_02639" /inference="COORDINATES: similar to AA sequence:RefSeq:YP_500522.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="XkdX family protein" /protein_id="WP_001790193.1" /translation="MKMIYPTFKDIKTFYVWGCYKNEQIKWYVDMGVIDKEEYALITG EKYPEAKDEKSQV" gene complement(293..670) /locus_tag="BJS49_RS13950" /old_locus_tag="SAMEA1708859_02640" CDS complement(293..670) /locus_tag="BJS49_RS13950" /old_locus_tag="SAMEA1708859_02640" /inference="COORDINATES: similar to AA sequence:RefSeq:YP_500523.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DUF2977 domain-containing protein" /protein_id="WP_000705888.1" /translation="MKITVNDKNEVIGFVNTGGLRNSLDVDDNNVPIKFKEEFEPRKF VFTNGEIKYNSNFEKEDVPNASKQQSESDLSDEELRGMVASMQMQVTQVNILAMELKQ QNAMLTQQLTELKAGKTNTEEDV" gene complement(670..2493) /locus_tag="BJS49_RS13955" /old_locus_tag="SAMEA1708859_02641" CDS complement(670..2493) /locus_tag="BJS49_RS13955" /old_locus_tag="SAMEA1708859_02641" /inference="COORDINATES: similar to AA sequence:RefSeq:YP_500524.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="phage baseplate upper protein" /protein_id="WP_000259600.1" /translation="MVVDNFSKDDNLIELQTTSQYNPIIDTNISFYESDRGTGVLNFA VTKNNRPLSISSEHVKTSIVLKTDDYNVDRGAYISDELTIVDAINGRLQYVIPNEFLK HSGKVHAQAFFTQNGSNNVVVERQFSFNIENDLVSGFDGITKLVYIKSIQDTIEAVGK DFNQLKQNMADTQTLIAKVNDSATKGIQQIEIKQNEAIQAITATQTSATQAVTAEFDK IVEKEQAIFERVNEVEQQINGADLVKGNSTTNWQKSKLTDDYGKAIESSEQSIDSVLS TVNTSRIIHITSATDAPSFKDIGTVDTPKEDGVDDGSDIPVAPNTLGKSGVLVVYVVD DSTARATWYPDDSNDEYTKYKIYGTWYPFYKKNDGNLTKQFVEETSNNALNQAKQYVD NKFGTTSWQQHKLTEPNGQSIQVNLNNAQGDLGYLTAGNYYATRVPDLPGSVESYEGY LSVFVKDDTNKLFNFTPYNSKKIYTRSITNGRLEQQWTVPNEHKSTVLFDGGANGVGT TINLTEPYTNYSILLVSGTYPGGVIEGFGLTALPNAIQLSKANVVDSDGNGGGIYECL LSKTSSTTLRIDNDVYFDLGKTSGSGANANKVTITKIMGWK" gene complement(2493..4391) /locus_tag="BJS49_RS13960" /old_locus_tag="SAMEA1708859_02642" CDS complement(2493..4391) /locus_tag="BJS49_RS13960" /old_locus_tag="SAMEA1708859_02642" /inference="COORDINATES: similar to AA sequence:RefSeq:YP_500525.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_070028423.1" /translation="MAYGLITSLHSITGEKVVAQHEYNYRLLDNGMSKLEKMFIYHQK EEIYAHSAKQIKYLNDSVEDYLTYLNGRFSNMIIGHNGDGINEVKDARVDNTGYDHKT LQDRLYHDYSTLDAFTKKVEKAVDEHYKEYQATEYRFEPKEQEPEFITDLSPYTNAVM QSFWVDPRTKIIYMTQARPGNHYMLSRLKPNGQFIDRLLVKNGGHGTHSAYRYIGNEL WIYSAVLDANNNNKFVRFKYRSGEMTYGNEMQDVMPNVFNDRYTSAIYNPIENLMVFR REYKTSEQQAKNALNFVEVRSADDIDKGIDKVLYQMDIPMQYTSGTQPMQGIAYDAGI LYWYTGDSNPANPNYLQGFDIKTKELLFKRRIDIGGVNNNFKGDFQEAEGLDMYYDLE TGRKALLIGVTIGPGNNRHHSIYSIGQRGVNQFLKNIAPQVSMTDSGGRVKPLPIQNP AYLSDITEVGHYYIYTQDTQNALDFPLPKAFRDAGWFFDVLPGHYNGALRQVLTRNST GRNMLKFERVIDIFNKKNNGAWNFCPQNAGYWEHIPKSITKLSDLKIVGLDFYITTEE SKRFTDFPKDFKGIAGWILEVKSNTPGNTTQVLRRNNFPSAHQFLVRNFGTGGVGKWS LFEGKVVE" gene complement(4404..6290) /locus_tag="BJS49_RS13965" /old_locus_tag="SAMEA1708859_02643" CDS complement(4404..6290) /locus_tag="BJS49_RS13965" /old_locus_tag="SAMEA1708859_02643" /EC_number="3.1.-.-" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001144711.1" /GO_function="GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="SGNH/GDSL hydrolase family protein" /protein_id="WP_001144700.1" /translation="MPVLLKSLQGVGHAIHVNTKLNEKLNEDSTLDIDMIENASTFDA IGAITKMWTITNIKGEDDLNEYVIVMLDKSTIGNKIKLSIKARQKELDDLNNSRIYQE YNESFTGVEFFNTVFKGTSYKYVLHTKVDASKFEGLGKGDTRLEIFKKGLERYHLEYE YDAKTKTFHLYDELSKVANYYIKSGVNADNVKIQEDASKCYTYIRGYGDFDGQQTFTE AGLQFEFTHPLAQLIGKREAPPLIDGRIKKEDVLKKSMELVIKKSVTASISLDFVAQP EHFPEAKPRIGDVVRVAEPTIGYNDLVRIVEITTHRDAYNNIIKQDVVLGDFTMRDRY RKAIHEATNYVKNVKTTKSDPAKYLRELNAKVNASLSINNELVKQNEKINAKVDKMST KTVTTANGTIMYDFTSQSSIRNIKSIGTIGDSVARGSHAKTNFTEMLGKKLKAKTTNL ARGGATMATVPIGKEAVENSIFRQAEQIRGDLIILQGTDDDWLHDYWAGVPIGTDKTD TKTFYGAFCSAIEVIRKNNPDSKILVMTATRQCPMSGTTIRRKDTDKNKLGLTLEDYV NAQILACSELDVPVFDAYHTDYFKPYNPAFRKASMEDGLHPNEKGHEVIMYELIKDYY SFYD" gene complement(6301..7236) /locus_tag="BJS49_RS13970" /old_locus_tag="SAMEA1708859_02644" CDS complement(6301..7236) /locus_tag="BJS49_RS13970" /old_locus_tag="SAMEA1708859_02644" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001604155.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="phage tail domain-containing protein" /protein_id="WP_000560198.1" /translation="MIAHDVEIIKNGVKYRVSDNPHTYKHLRVLDYNVIGSGYKRNYS PLDGVDGRFHNYAKEEYKKVELRLRYEVPKIAYASHLKSDIQTLFYGRFYLRELATPD NTIKFENMFEPLEQEFELDYVDGRQLFVGLVSEVSFDTTKTSGEITLTFETTELPFFE SIGYSTDLESDNDLEKWSVPDRIALNENDRSRQMTFYNTSSGDVYYNGDVALTQFNQF NVVEIELAEDVKADDKDGFTFYMDKGNISVIKDVDLKAGDKIIFDNKHTYRGNLNIDL YNKTLEQPVLYPGWNHFKANRLMKKIVFRHKLYYR" gene complement(7251..10337) /locus_tag="BJS49_RS13975" /old_locus_tag="SAMEA1708859_02645" CDS complement(7251..10337) /locus_tag="BJS49_RS13975" /old_locus_tag="SAMEA1708859_02645" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001834821.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="terminase" /protein_id="WP_070028432.1" /translation="MRTAQRMAKTDIPDEIKTEVTANIRDYQRELTRAKSMAQRWRGH SVKLFMKTDEYKANLERAKAQVERFKQHKVDLKLSNTELMAKYNATKATVEAWRKHVV KLDLDANPAKMAVKGFKEDLIDLSRHSFDVDSSRWKLGNKFTKEFNEVEGAVKRSFGR IGQIMRKEVNGTSDIWGKLNNSLKDYGEKMDALATKIRTFGTIFAQQVKGLMIASIQA LIPVIAGLVPAIMAVLNAVGVLGGGVIGLAGAFSVAGVGAVGFGAMAVTALKMVKDGT LAVTKEVQNFRNASDQLKTTWQGIVKENQASIFNAMSAGIRGVTSAMSQLKPFLSEVS MLVEANARKFEDWVKHSETAKKAFEALNSVGGAIFGDLLNAAGRFGDGLFNIFTQLMP LFKFMSQGLQNMSIAFQNWANSVAGQNAIKAFIDYTTTNLPKIGQIFGNVFAGIGNLM IAFAQNSSNIFDWLVKLTSQFRAWSEQVGQSQGFKDFISYVQENGPTIMQLIGNIVKA LVAFGTAMAPIASKLLDFITNLAGFIAKLFETHPAVAQIIGVMGILGGAFWALMAPIV AISSVLTNVFGLSLFSVVKKILSFIRTSSLVTGAMEALTGVFGTISAPILAVIAVIGA FIGVLVYLWKTNENFRNTITEAWNGVKTAVSGAIQGVVGWLTELWGKIQSTLQPIMPI LQVLGQIFMQVLGVLVIGIITNVMNIIQGLWTLITIAFQAIGTVISVAVQIIVGLFTA LIQLLTGDFSGAWETIKTTITNVLDTIWQYMQSVWESIIGFLTGVMNRTLSMFGTSWS QIWSTITNFVSSIWNTVTSWFSRVASSVAEKMGQALNFIITKGSEWVSNIWNTVTSFA SKVADGFKRVVSNVGDGMKNALDKIKSFFSDFLNAGAELIGKVAEGVANAAHKVVSAV GDAISSAWDSVTSFVSGHGGGSGLGKGLAVSQAKVMATSFGKTFTSELGSTLTDGFND SLTPSVDGHMTNDVQHSMKENNRPIVNVTVRNEGDLNMIKSHIDDMDAKDGSFNLM" gene complement(10397..10738) /locus_tag="BJS49_RS13980" /old_locus_tag="SAMEA1708859_02646" CDS complement(10397..10738) /locus_tag="BJS49_RS13980" /old_locus_tag="SAMEA1708859_02646" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_015978311.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_049948777.1" /translation="MTSRYIGYMSNDELMSMLPAEWNDWIVGARQALIDQRDIALYGA QYNAVAQAGKSLKRFVRQNEREHYIIRGQEDEYERMKQRELAKNKRKREIQKQGTRKF LNSLKTSHKGG" gene complement(10759..11253) /locus_tag="BJS49_RS13985" /old_locus_tag="SAMEA1708859_02647" CDS complement(10759..11253) /locus_tag="BJS49_RS13985" /old_locus_tag="SAMEA1708859_02647" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_000141081.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="tail assembly chaperone" /protein_id="WP_015978362.1" /translation="MTETTFNPITSLTINNEEVKAKATFMFDKTAKKFATEQEDNKGR KQTISGFTNVYNALLERDTVAIVDFWECATAYLGKSAPKRENIEAEIMEIIERENDTL NLLQGALDVMNNSGFFKQKSRLFWTQMNQAPSLAKEDEKEGAKAGIEMMKNNYKEIMT VAPY" gene complement(11314..11874) /locus_tag="BJS49_RS13990" /old_locus_tag="SAMEA1708859_02648" CDS complement(11314..11874) /locus_tag="BJS49_RS13990" /old_locus_tag="SAMEA1708859_02648" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001606768.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_000046067.1" /translation="MAQDKYIVALQIADKDLAKKLTIEEATLLGSLAEGGHTISNDLA EIIQGGKKDYSRNSVEEEIKLTLDVVPGDKGQLALKESVKQFKQLRVWIWETKKRDGK HHGVFAYVVIEEHEWSFDDEDNKIEITAKVKFNSADGTINDLPKEWLNPSALAPVVEF EDMNAYEDSYENRTKKTTAGSSDLSM" gene complement(11861..12298) /locus_tag="BJS49_RS13995" /old_locus_tag="SAMEA1708859_02649" CDS complement(11861..12298) /locus_tag="BJS49_RS13995" /old_locus_tag="SAMEA1708859_02649" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_000270194.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DUF3168 domain-containing protein" /protein_id="WP_000270196.1" /translation="MWVSVERYLFNKVYNKLKSNPIIQKQLDGRVFDCVQKDAVYPYI VVGETNVTNKETTTSMVEDVGITLHVYSQARNRDEASQIIQFLGFVLNNEIEIDYYSF IKSRIDTQEVITDIDQYTKHGIIRLVFKYRHNTLQRSVTNGAG" gene complement(12311..12724) /locus_tag="BJS49_RS14000" /old_locus_tag="SAMEA1708859_02650" CDS complement(12311..12724) /locus_tag="BJS49_RS14000" /old_locus_tag="SAMEA1708859_02650" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_002480803.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="HK97-gp10 family putative phage morphogenesis protein" /protein_id="WP_015978370.1" /translation="MAKVKYGNWDLVKELENYERDIERWVKRGIAKTTVKIHNTIISL MPVDTGYLRESVTMDFKDGGFTGVINIGSEYAIYVNYGTGIYATGAGGSRAKKIPWSY KDANGKWHTTKGQHAQPFWEPAIDAGRVFFNKYFS" gene complement(12711..13046) /locus_tag="BJS49_RS14005" /old_locus_tag="SAMEA1708859_02651" CDS complement(12711..13046) /locus_tag="BJS49_RS14005" /old_locus_tag="SAMEA1708859_02651" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_000482988.1" /GO_component="GO:0044423 - virion component [Evidence IEA]" /GO_function="GO:0005198 - structural molecule activity [Evidence IEA]" /GO_process="GO:0019068 - virion assembly [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="phage head closure protein" /protein_id="WP_015978367.1" /translation="MFNPFDEFPHTIEIGEVEVVGTYPKEYERFKSKETIKGFMDTPT SSETLKFHQMSKDFDRNLYTPYHIPITNKTLFNYEGKTYEVVGEPVDQGGQHEINLTR LRVRLIGKG" gene complement(13039..13353) /locus_tag="BJS49_RS14010" /old_locus_tag="SAMEA1708859_02652" CDS complement(13039..13353) /locus_tag="BJS49_RS14010" /old_locus_tag="SAMEA1708859_02652" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_015978403.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="phage head-tail connector protein" /protein_id="WP_015978368.1" /translation="MDTKDVKMINGLSLNDSSNDEQIEYLIEEYKSVAEDYCNQKFDD KAVPSGVKKFIAECIKFGTTGNISARTMGTVSYTYITDIPSSAYAYLMPYRKLSWGKR YV" gene complement(13353..13679) /locus_tag="BJS49_RS14015" /old_locus_tag="SAMEA1708859_02653" CDS complement(13353..13679) /locus_tag="BJS49_RS14015" /old_locus_tag="SAMEA1708859_02653" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_000278804.1" /GO_process="GO:0006353 - DNA-templated transcription termination [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="Rho termination factor N-terminal domain-containing protein" /protein_id="WP_000278937.1" /translation="MYKVVEYFEDAQDNRHPYHEGDIYPRDGLEVSEERLAELSTTNN CREIIGIKLVEDEQTEQSETNADEQKSLSDMKVTELKELAKKRGIKGYSDMKKDELIK VLVGVK" gene complement(13696..14655) /locus_tag="BJS49_RS14020" /old_locus_tag="SAMEA1708859_02654" CDS complement(13696..14655) /locus_tag="BJS49_RS14020" /old_locus_tag="SAMEA1708859_02654" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001044072.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_001044072.1" /translation="MNKTIKNATGMLKLNLQHFANKSVEPGQTLLKNKHVGILERVTA VNAYSTPALISNDAIFMEGRSFTVMKGDTTELKDYKRNATNEFDHPKIEETTYFLDQE KYWGRFVDALDRKDTEGNIDINYVVARQGAEVVAPYLDNLRFATLARNKAKHLTVGTG SDAQYDAVLDVSVELDEIKAPENRVLFVSPTFYKGIKKFVIALPQGDTRQQVLGKGVQ GELDGFVIVKVPTKLLQGLQAIAVVGEVLASPIQADLAKTNSNIPGMFGTLAEQLLYT GAFVPEHLQKYIFTIGGTEVATKRDGVDAHADNVAKPSGSLEM" gene complement(14667..15191) /locus_tag="BJS49_RS14025" /old_locus_tag="SAMEA1708859_02655" CDS complement(14667..15191) /locus_tag="BJS49_RS14025" /old_locus_tag="SAMEA1708859_02655" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_000366930.1" /GO_process="GO:0019069 - viral capsid assembly [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="phage scaffolding protein" /protein_id="WP_070028425.1" /translation="MDLYTLLGQFKDGEIDKQKVIDAIDESKSGMVPRSRLNDKNTEI EELKEEISKRDEQIVELKDSVKDESELQKALEEEQNKNAELETKYKDLQLNSAVKLAV NHEANDADDILTFINKDELELADDGTVKGLDEAIGTLKESKPYLFAPSKPTGNTPQDG GPPSPHEAWTEFLN" gene complement(15289..16269) /locus_tag="BJS49_RS14030" /old_locus_tag="SAMEA1708859_02656" CDS complement(15289..16269) /locus_tag="BJS49_RS14030" /old_locus_tag="SAMEA1708859_02656" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001795666.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="phage head morphogenesis protein" /protein_id="WP_015978380.1" /translation="MTEVLTVPNNKKDLTIKNQNDIDEYIDNLISKAEKPIEQLFANR LKEIKQIIADMFEKYQSDDVYVTWTEFNKYNRLNKELTRIGTMLTDDYRQVAKMIQKS QEDAYIEKFLMSLYLYETASQTSMQFDVPSKEVITSAIEQPIEFIRLVPTLQKHRDEV LKKIRLHITQGIMSGEGYSKIAKAIRDDIGMSKAQSLRVARTEAGRAMSQAGLDSALV AQKNGLQMYKYWQATKDTRTRDTHRHLDGAKKRIDEPFKSSGCVGQAPKLFVGVNSAK ENINCRCKLMYYIDEDDLPSTTRARKDDGTTEVIPQMTYREWEKYKRKRK" gene complement(16208..17626) /locus_tag="BJS49_RS14035" /old_locus_tag="SAMEA1708859_02657" CDS complement(16208..17626) /locus_tag="BJS49_RS14035" /old_locus_tag="SAMEA1708859_02657" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001573866.1" /GO_component="GO:0046798 - viral portal complex [Evidence IEA]" /GO_function="GO:0005198 - structural molecule activity [Evidence IEA]" /GO_process="GO:0051027 - DNA transport [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="phage portal protein" /protein_id="WP_001573866.1" /translation="MYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEIS IGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFK HTDDEVVKRIDEVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQGI PIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTH FSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNY DDQELPEFKRLLRYYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDF SSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDI SFNYNKVANTELQVQTAQQSMGIVSHETVLENHPFVEDLQAELERIEQEQMEYNKQLP NLDDGGADSAQQQERSNNKESE" gene complement(17640..18848) /locus_tag="BJS49_RS14040" /old_locus_tag="SAMEA1708859_02658" CDS complement(17640..18848) /locus_tag="BJS49_RS14040" /old_locus_tag="SAMEA1708859_02658" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001606760.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="PBSX family phage terminase large subunit" /protein_id="WP_001573864.1" /translation="MINEMLNPKQQEIWNCFINDKPKVLIASGAKRAGKTYVFILLFL MHIATYKDKGLNFIIGGATQASIRRNILDDMELILGRELTLDKSNAVKIFGNKVYVFD GQNSDAWKKARGFTSAGAFLNEGTALHNMFIKEVFSRCSHKGARILIDTNPENPMHPV KKDYIDKSGQRLSNGRLNIKAFQFTLFDNTFLDEEYIESIIASTPTGMFTDRDIYGKW VSAEGVVYKDFKEKVHYITEEEFKTKQIKRKYAGVDWGYEHYGSIMVVAEDFDGNKYV IEEHAHRHKEIDDWVAIAKGVIKRHGDILFYCDTARPEHIERFRREKIKARYADKAVI AGIEVISRLFKLNKIFIIKEKVSLFKEEIYNYVWKDNADEPVKLNDDTLDALRYAVYT ANKPSGTGFN" gene complement(18841..19335) /locus_tag="BJS49_RS14045" /old_locus_tag="SAMEA1708859_02659" CDS complement(18841..19335) /locus_tag="BJS49_RS14045" /old_locus_tag="SAMEA1708859_02659" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_000594083.1" /GO_process="GO:0051276 - chromosome organization [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="terminase small subunit" /protein_id="WP_070028427.1" /translation="MIKLTPKQEKFVLGLIEGKSQRKAYIDAGYSTKGKSDNYIDSRA FELSKNSAVLDRYEELRQEAAEQSKWTRQKAFEEYEWLKNTAKNDIEVEGVKKATADA FLASLDGMNRMTLGNEVLTNKKIETEIKMLEKKIDQMDKTENNSQEAEVAKALIKLAG VNND" gene complement(19681..20082) /locus_tag="BJS49_RS14050" /old_locus_tag="SAMEA1708859_02660" CDS complement(19681..20082) /locus_tag="BJS49_RS14050" /old_locus_tag="SAMEA1708859_02660" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_000286967.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_000286968.1" /translation="MYSKESIVNMIGTHKMKCNVLADVIPEYDSNSIAQYGIQATLPK PQGENSSKVEDVVVRLERANKRYAQMLKEVEFINQSQQRLGHVDFCFLELLKKGYNRD AIIKKMPNSKLNRNNFLARRDELAEKIYLLQ" gene complement(20083..20256) /locus_tag="BJS49_RS14055" /old_locus_tag="SAMEA1708859_02661" CDS complement(20083..20256) /locus_tag="BJS49_RS14055" /old_locus_tag="SAMEA1708859_02661" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_000595244.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="transcriptional activator RinB" /protein_id="WP_029265324.1" /translation="MIKQILRLIFLLAMYELGKYVTEQVYIMMTANDDVEEPSDFAKL SDQCDLMRAEVSE" CONTIG join(FMPX01000030.1:1..20292) //
Whole sequence (abbreviated view) Selected region from: to:
All features Gene, RNA, and CDS features only
Show sequence Show reverse complement Show gap features
Your browsing activity is empty.
Activity recording is turned off.
Turn recording back on