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Staphylococcus aureus strain MRSA, whole genome shotgun sequence

NCBI Reference Sequence: NZ_CYMQ01000019.1

FASTA Graphics 

LOCUS       NZ_CYMQ01000019         3278 bp    DNA     linear   CON 04-DEC-2023
DEFINITION  Staphylococcus aureus strain MRSA, whole genome shotgun sequence.
ACCESSION   NZ_CYMQ01000019 NZ_CYMQ01000000
VERSION     NZ_CYMQ01000019.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA2384637
            Assembly: GCF_001287885.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1
  AUTHORS   Informatics,Pathogen.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-SEP-2015) SC, Wellcome Trust Sanger Institute, CB10
            1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CYMQ01000019.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/04/2023 02:11:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,923
            CDSs (total)                      :: 2,854
            Genes (coding)                    :: 2,763
            CDSs (with protein)               :: 2,763
            Genes (RNA)                       :: 69
            rRNAs                             :: 3, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 58
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 91
            CDSs (without protein)            :: 91
            Pseudo Genes (ambiguous residues) :: 0 of 91
            Pseudo Genes (frameshifted)       :: 43 of 91
            Pseudo Genes (incomplete)         :: 50 of 91
            Pseudo Genes (internal stop)      :: 20 of 91
            Pseudo Genes (multiple problems)  :: 21 of 91
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3278
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="MRSA"
                     /isolation_source="Wound"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /collection_date="2004"
     gene            <177..812
                     /locus_tag="AOI28_RS15575"
                     /pseudo
     CDS             <177..812
                     /locus_tag="AOI28_RS15575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003454325.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside 6-adenylyltransferase"
     gene            809..1339
                     /gene="sat4"
                     /locus_tag="AOI28_RS14850"
                     /old_locus_tag="ERS410962_02791"
     CDS             809..1339
                     /gene="sat4"
                     /locus_tag="AOI28_RS14850"
                     /old_locus_tag="ERS410962_02791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000627290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="streptothricin N-acetyltransferase Sat4"
                     /protein_id="WP_000627289.1"
                     /translation="MITEMKAGHLKDIDKPSEPFEVIGKIIPRYENENWTFTELLYEA
                     PYLKSYQDEEDEEDEEADCLEYIDNTDKIIYLYYQDDKCVGKVKLRKNWNRYAYIEDI
                     AVCKDFRGQGIGSALINISIEWAKHKNLHGLMLETQDNNLIACKFYHNCGFKIGSVDT
                     MLYANFEKAVFWYLRF"
     gene            1432..2226
                     /gene="aph(3')-IIIa"
                     /locus_tag="AOI28_RS14855"
                     /old_locus_tag="ERS410962_02792"
     CDS             1432..2226
                     /gene="aph(3')-IIIa"
                     /locus_tag="AOI28_RS14855"
                     /old_locus_tag="ERS410962_02792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032491780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside O-phosphotransferase
                     APH(3')-IIIa"
                     /protein_id="WP_001096887.1"
                     /translation="MAKMRISPELKKLIEKYRCVKDTEGMSPAKVYKLVGENENLYLK
                     MTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADGVLCSEEY
                     EDEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWE
                     EDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGRADKW
                     YDIAFCVRSIREDIGEEQYVELFFDLLGIKPDWEKIKYYILLDELF"
     gene            2502..3073
                     /locus_tag="AOI28_RS15585"
                     /pseudo
     CDS             2502..3073
                     /locus_tag="AOI28_RS15585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001079940.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HTH domain-containing protein"
CONTIG      join(CYMQ01000019.1:1..3278)
//
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