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Klebsiella pneumoniae strain Kpn02076 isolate Kpn02076 Kpn02076-200721_contig_26, whole genome shotgun sequence

NCBI Reference Sequence: NZ_CAYAKP010000026.1

FASTA Graphics 

LOCUS       NZ_CAYAKP010000026       934 bp    DNA     linear   CON 28-NOV-2024
DEFINITION  Klebsiella pneumoniae strain Kpn02076 isolate Kpn02076
            Kpn02076-200721_contig_26, whole genome shotgun sequence.
ACCESSION   NZ_CAYAKP010000026 NZ_CAYAKP010000000
VERSION     NZ_CAYAKP010000026.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA116319086
            Assembly: GCF_964302925.1
KEYWORDS    WGS; RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Klebsiella/Raoultella group;
            Klebsiella; Klebsiella pneumoniae complex.
REFERENCE   1  (bases 1 to 934)
  AUTHORS   Reuter,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-OCT-2024) Universitaetsklinikum Freiburg, Institute
            for infection prevention and control, Breisacher Strasse 115B,
            79106 Freiburg, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAYAKP010000026.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964302925.1-RS_2024_11_28
            Annotation Date                   :: 11/28/2024 00:07:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,078
            CDSs (total)                      :: 4,971
            Genes (coding)                    :: 4,887
            CDSs (with protein)               :: 4,887
            Genes (RNA)                       :: 107
            rRNAs                             :: 5, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 5 (5S)
            partial rRNAs                     :: 4, 4 (16S, 23S)
            tRNAs                             :: 79
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 84
            CDSs (without protein)            :: 84
            Pseudo Genes (ambiguous residues) :: 0 of 84
            Pseudo Genes (frameshifted)       :: 46 of 84
            Pseudo Genes (incomplete)         :: 38 of 84
            Pseudo Genes (internal stop)      :: 15 of 84
            Pseudo Genes (multiple problems)  :: 12 of 84
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..934
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /submitter_seqid="Kpn02076-200721_contig_26"
                     /strain="Kpn02076"
                     /isolate="Kpn02076"
                     /db_xref="taxon:573"
                     /note="contig: Kpn02076-200721_contig_26"
     gene            complement(<1..480)
                     /locus_tag="ACJ14U_RS25365"
     rRNA            complement(<1..480)
                     /locus_tag="ACJ14U_RS25365"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            complement(671..746)
                     /locus_tag="ACJ14U_RS25370"
     tRNA            complement(671..746)
                     /locus_tag="ACJ14U_RS25370"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(710..712),aa:Glu,seq:ttc)
     gene            complement(832..>934)
                     /locus_tag="ACJ14U_RS25375"
     rRNA            complement(832..>934)
                     /locus_tag="ACJ14U_RS25375"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
CONTIG      join(CAYAKP010000026.1:1..934)
//
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