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Pseudomonas aeruginosa strain 209 isolate 209, whole genome shotgun sequence

NCBI Reference Sequence: NZ_CACPER010000107.1

FASTA Graphics 

LOCUS       NZ_CACPER010000107       374 bp    DNA     linear   CON 28-JUL-2024
DEFINITION  Pseudomonas aeruginosa strain 209 isolate 209, whole genome shotgun
            sequence.
ACCESSION   NZ_CACPER010000107 NZ_CACPER010000000
VERSION     NZ_CACPER010000107.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA6109557
            Sequence Read Archive: ERR3619152
            Assembly: GCF_902633015.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas aeruginosa
  ORGANISM  Pseudomonas aeruginosa
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Coello Pelegrin,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2019) bioMerieux - La Balme-Les Grottes, 3, route
            de Port Michaud, 38390, La Balme-Les Grottes, France
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CACPER010000107.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902633015.1-RS_2024_07_28
            Annotation Date                   :: 07/28/2024 03:55:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,055
            CDSs (total)                      :: 5,989
            Genes (coding)                    :: 5,859
            CDSs (with protein)               :: 5,859
            Genes (RNA)                       :: 66
            rRNAs                             :: 3, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 2 (5S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 130
            CDSs (without protein)            :: 130
            Pseudo Genes (ambiguous residues) :: 0 of 130
            Pseudo Genes (frameshifted)       :: 36 of 130
            Pseudo Genes (incomplete)         :: 108 of 130
            Pseudo Genes (internal stop)      :: 7 of 130
            Pseudo Genes (multiple problems)  :: 18 of 130
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..374
                     /organism="Pseudomonas aeruginosa"
                     /mol_type="genomic DNA"
                     /strain="209"
                     /isolate="209"
                     /isolation_source="throat swab"
                     /db_xref="taxon:287"
                     /note="contig: scaffold107.1"
     gene            complement(<1..>374)
                     /locus_tag="HUW20_RS30175"
     CDS             complement(<1..>374)
                     /locus_tag="HUW20_RS30175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_253384.1"
                     /GO_function="GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="thiamine pyrophosphate-binding protein"
                     /protein_id="WP_254593175.1"
                     /translation="EMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHE
                     QAAVHMADGLARATGEVGVVLVTSGPGATNAITGIATAYMDSIPLVVLSGQVATSLIG
                     YDAFQECDMVGISRPVVKHSFL"
CONTIG      join(CACPER010000107.1:1..374)
//
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