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NCBI Reference Sequence: NZ_CACPER010000107.1
FASTA Graphics
LOCUS NZ_CACPER010000107 374 bp DNA linear CON 28-JUL-2024 DEFINITION Pseudomonas aeruginosa strain 209 isolate 209, whole genome shotgun sequence. ACCESSION NZ_CACPER010000107 NZ_CACPER010000000 VERSION NZ_CACPER010000107.1 DBLINK BioProject: PRJNA224116 BioSample: SAMEA6109557 Sequence Read Archive: ERR3619152 Assembly: GCF_902633015.1 KEYWORDS WGS; RefSeq. SOURCE Pseudomonas aeruginosa ORGANISM Pseudomonas aeruginosa Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 AUTHORS Coello Pelegrin,A. TITLE Direct Submission JOURNAL Submitted (26-OCT-2019) bioMerieux - La Balme-Les Grottes, 3, route de Port Michaud, 38390, La Balme-Les Grottes, France COMMENT REFSEQ INFORMATION: The reference sequence is identical to CACPER010000107.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_902633015.1-RS_2024_07_28 Annotation Date :: 07/28/2024 03:55:30 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 6,055 CDSs (total) :: 5,989 Genes (coding) :: 5,859 CDSs (with protein) :: 5,859 Genes (RNA) :: 66 rRNAs :: 3, 1, 3 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) partial rRNAs :: 2, 2 (5S, 23S) tRNAs :: 55 ncRNAs :: 4 Pseudo Genes (total) :: 130 CDSs (without protein) :: 130 Pseudo Genes (ambiguous residues) :: 0 of 130 Pseudo Genes (frameshifted) :: 36 of 130 Pseudo Genes (incomplete) :: 108 of 130 Pseudo Genes (internal stop) :: 7 of 130 Pseudo Genes (multiple problems) :: 18 of 130 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..374 /organism="Pseudomonas aeruginosa" /mol_type="genomic DNA" /strain="209" /isolate="209" /isolation_source="throat swab" /db_xref="taxon:287" /note="contig: scaffold107.1" gene complement(<1..>374) /locus_tag="HUW20_RS30175" CDS complement(<1..>374) /locus_tag="HUW20_RS30175" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_253384.1" /GO_function="GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=3 /transl_table=11 /product="thiamine pyrophosphate-binding protein" /protein_id="WP_254593175.1" /translation="EMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHE QAAVHMADGLARATGEVGVVLVTSGPGATNAITGIATAYMDSIPLVVLSGQVATSLIG YDAFQECDMVGISRPVVKHSFL" CONTIG join(CACPER010000107.1:1..374) //
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