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NCBI Reference Sequence: NZ_BFPU01000030.1
FASTA Graphics
LOCUS NZ_BFPU01000030 37315 bp DNA linear CON 15-SEP-2024 DEFINITION Escherichia coli strain JML108 sequence030, whole genome shotgun sequence. ACCESSION NZ_BFPU01000030 NZ_BFPU01000000 VERSION NZ_BFPU01000030.1 DBLINK BioProject: PRJNA224116 BioSample: SAMD00077207 Sequence Read Archive: DRR102799 Assembly: GCF_005386745.1 KEYWORDS WGS; RefSeq; STANDARD_DRAFT. SOURCE Escherichia coli ORGANISM Escherichia coli Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia. REFERENCE 1 AUTHORS Arimizu,Y. and Ogura,Y. TITLE Large scale genomics of bovine and human commensal E. coli to reveal the emerging process of EHEC JOURNAL Unpublished REFERENCE 2 (bases 1 to 37315) AUTHORS Arimizu,Y., Tanizawa,Y. and Ogura,Y. TITLE Direct Submission JOURNAL Submitted (24-APR-2018) Contact:Yoshitoshi Ogura Kyushu University, Department of Bacteriology, Faculty of Medical Sciences; 3-1-1, Maidashi, Higashi-ku, Fukuoka 812-8582, Japan URL :http://www.bact.med.kyushu-u.ac.jp COMMENT REFSEQ INFORMATION: The reference sequence is identical to BFPU01000030.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Platanus v. 1.2.2 Genome Coverage :: 69x Sequencing Technology :: Illumina MiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_005386745.1-RS_2024_09_15 Annotation Date :: 09/15/2024 06:29:51 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.8 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 5,363 CDSs (total) :: 5,266 Genes (coding) :: 4,907 CDSs (with protein) :: 4,907 Genes (RNA) :: 97 rRNAs :: 6, 5, 6 (5S, 16S, 23S) complete rRNAs :: 4 (5S) partial rRNAs :: 2, 5, 6 (5S, 16S, 23S) tRNAs :: 74 ncRNAs :: 6 Pseudo Genes (total) :: 359 CDSs (without protein) :: 359 Pseudo Genes (ambiguous residues) :: 0 of 359 Pseudo Genes (frameshifted) :: 106 of 359 Pseudo Genes (incomplete) :: 261 of 359 Pseudo Genes (internal stop) :: 53 of 359 Pseudo Genes (multiple problems) :: 54 of 359 Pseudo Genes (short protein) :: 1 of 359 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..37315 /organism="Escherichia coli" /mol_type="genomic DNA" /submitter_seqid="sequence030" /strain="JML108" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:562" /geo_loc_name="Japan" /collection_date="2015" gene <487..642 /locus_tag="FFD94_RS03615" /pseudo CDS <487..642 /locus_tag="FFD94_RS03615" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001395480.1" /note="internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="IS630 family transposase" gene complement(662..1498) /locus_tag="FFD94_RS03620" /old_locus_tag="HmCmsJML108_00657" CDS complement(662..1498) /locus_tag="FFD94_RS03620" /old_locus_tag="HmCmsJML108_00657" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001446641.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_223175058.1" /translation="MGTRDTSKIELTELGKSLVYPKSQEEEGNAILSSFLNIDLFKKV YDYYQGGNLPEIEYLKNTLKTEFGIDDQLQDDFYNLYQQNLKYVREKVAREDSISTNS VNDKTATASSSIMLGESQGQSKLIAFVAMPFSEKTSNYPHGYFDEVLKHLITPSAVKA GFNAKTAKKAGSEVIQSTIVNDLDAADLVIVDLTEHNPNVLFELGMRIAFSKPVCLIR AKGTAPIFDIDHMLRVYDYNPCLWPSTLESDIPQLSEHIKETWINRRERSYLDILREN KS" gene complement(1528..1779) /locus_tag="FFD94_RS03625" /old_locus_tag="HmCmsJML108_00658" CDS complement(1528..1779) /locus_tag="FFD94_RS03625" /old_locus_tag="HmCmsJML108_00658" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001287855.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_001287855.1" /translation="MSEDNEISQNETTPEVASETTPVVKVRKPRKKATKPKRDFPQYS LEDCRKIADCLKEFNAGNPWAPGEVAKALGLGKVPIFST" gene complement(1914..>2045) /locus_tag="FFD94_RS03630" /pseudo CDS complement(1914..>2045) /locus_tag="FFD94_RS03630" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_017802842.1" /note="incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="phage virion morphogenesis protein" gene complement(<1994..2428) /locus_tag="FFD94_RS03635" /old_locus_tag="HmCmsJML108_00659" /pseudo CDS complement(<1994..2428) /locus_tag="FFD94_RS03635" /old_locus_tag="HmCmsJML108_00659" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001395480.1" /note="incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="transposase" gene 2962..10038 /gene="yeeJ" /locus_tag="FFD94_RS03640" /old_locus_tag="HmCmsJML108_00661" CDS 2962..10038 /gene="yeeJ" /locus_tag="FFD94_RS03640" /old_locus_tag="HmCmsJML108_00661" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416485.4" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="inverse autotransporter adhesin YeeJ" /protein_id="WP_032158356.1" /translation="MATKKRSGEEINDRQILCGMGIKLRRLTAGICLITQLAFPMAAA AQGVVNAATQQPVPAQIAIANANTVPYTLGALESAQSVAERFGISVAELRKLNQFRTF ARGFDNVRQGDELDVPAQVSEKKLTPPPGNSSDNLEQQIASTSQQIGSLLAEDMNSEQ AANMARGWASSQASGAMTDWLSRFGTARITLGVDEDFSLKNSQFDFLHPWYETPDNLF FSQHTLHRTDERTQINNGLGWRHFTPTWMSGINFFFDHDLSRYHSRAGIGAEYWRDYL KLSSNGYLRLTNWRSAPELDNDYEARPANGWDVRAESWLPAWPHLGGKLVYEQYYGDE VALFDKDDRQSNPHAITAGLNYTPFPLMTFSAEQRQGKQGENDTRFAVDFTWQPGSAM QKQLDPNEVAARRSLAGSRYDLVDRNNNIVLEYRKKELVRLTLTDPVTGKSGEVKSLV SSLQTKYALKGYNVEATALEAAGGKVVTTGKDILVTLPAYRFTSTPETDNTWPIEVTA EDAKGNLSNREQSMVVVQAPTLSQKDSSVSLSTQTLNADSHSTATLTFIAHDAAGNPV VGLVLSTRHEGVQDITLSDWKDNGDGSYTQILTTGAMSGTLTLMPQLNGVDAAKAPAV VNIISVSSSRTHSSIKIDKDRYLSGNPIEVTVELRDENDKPVKEQKQQLNNAVSIDNV KPGVTTDWKETADGVYKATYTAYTKGSGLTAKLLMQNWNEDLHTAGFIIDANPQSAKI ATLSASNNGVLANENAANTVSVNVADEGSNPINDHTVTFAVLSGSATSFNNQNTAKTD VNGLATFDLKSSKQEDNTVEVTLENGVKQTLIVSFVGDSSTAQVDLQKSKNEVVADGN DSVTMTATVRDAKGNLLNDVMVTFNVNSAEAKLSQTEVNSHDEIATATLTSLKNGDYR VTASVSSGSQANQQVNFIGDQSTAALTLSVPSGDITVTNTAPQYMTATLQDKNGNPLK DKEITFSVPNDVASKFSISNGGKGMTDSNGVAIASLTGTLAGTHMIMARLANSNVSDA QPMTFVADKDRAVVVLQTSKAEIIGNGVDETTLTATVKDPSNHPVAGITVNFTMPQDV AANFTLENNGIAITQANGEAHVTLKGKKAGTHTVTATLGNNNTSDSQPVTFVADKASA QVVLQISKDEITGNGVDSATLTATVKDQFDNEVNNLPVTFSSASSGLTLTPGVSNTNE SGIAQATLAGVAFGEKTVTASLANNGASDNKTVHFIGDTAAAKIIELTPVPDSIIAGT PQNSSGSVITATVVDNNGFPVKGVTVNFTSNAATAEMTNGGQAVTNEQGKATVTYTNT RSSIESGARPDTVEASLENGSSTLSTSINVNADASTAHLTLLQALFDTVSAGETTSLY IEVKDNYGNGVPQQEVTLSVSPSEGVTPSNNAIYTTNHDGNFYASFTATKAGVYQLTA TLENGDSMQQTVTYVPNVANAEITLAASKDPVIADNNDLTTLTATVADTEGNAIANTE VTFTLPEDVKANFTLSDGGKVITDAEGKAKVTLKGTKAGAHTVTASMTGGKSEQLVVN FIADTLTAQVNLNVTEDNFIANNVGMTRLQATVTDGNGNPLANEAVTFTLPADVSASF TLGQGGSAITDINGKAEVTLSGTKSGTYPVTVSVNNYGVSDTKQVTLIADAGTAKLAS LTSVYSFVVSTTEGATMTASVTDANGNPVEGIKVNFRGTSVTLSSTSVETDDRGFAEI LVTSTEVGLKTVSASLADKPTEVISRLLNASADVNSATITSLEIPEGQVMVAQDVAVK AHVNDQFGNPVAHQPVTFSAEPSSQMIISQNTVSTNTQGVAEVTMTPERNGSYMVKAS LPNGASLEKQLEAIDEKLTLTASSPLIGVYAPTGATLTATLTSANGTPVEGQVINFSV TPEGATLSGGKVRTNSSGQAPVVLTSNKVGTYTVTASFHNGVTIQTQTTVKVTGNSST AHVASFIADPSTIAATNTDLSTLKATVEDGSGNLIEGLTVYFALKSGSATLTSLTAVT DQNGIATTSVKGAMTGSVTVSAVTTAGGMQTVDITLVAGPADTSQSVLKSNRSSLKGD YTDSAELRLVLHDISGNPIKVSEGMEFVQSGTNVPYIKISAIDYSLNINGDYKATVTG GGEGIATLIPVLNGVHQAGLSTTIQFTRAEDKIMSGTVSVNGTDLPTTTFPSQGFTGA YYQLNNDNFAPGKTAADYEFSSSASWVDVDATGKVTFKNVGSNSERITATPKSGGPSY VYEIRVKSWWVNAGEAFMIYSLAENFCSSNGYTLPRANYLNHCSSRGIGSLYSEWGDM GHYTTDAGFQSNMYWSSSPANSSEQYVVSLATGDQSVFEKLGFAYATCYKNL" gene complement(10300..11352) /locus_tag="FFD94_RS03645" /old_locus_tag="HmCmsJML108_00662" /pseudo CDS complement(10300..11352) /locus_tag="FFD94_RS03645" /old_locus_tag="HmCmsJML108_00662" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_310804.1" /note="internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="glycosyltransferase family 9 protein" gene 11667..12983 /gene="shiA" /locus_tag="FFD94_RS03650" /old_locus_tag="HmCmsJML108_00663" CDS 11667..12983 /gene="shiA" /locus_tag="FFD94_RS03650" /old_locus_tag="HmCmsJML108_00663" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416488.1" /GO_component="GO:0016020 - membrane [Evidence IEA]" /GO_function="GO:0022857 - transmembrane transporter activity [Evidence IEA]" /GO_process="GO:0055085 - transmembrane transport [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="shikimate transporter" /protein_id="WP_000378575.1" /translation="MDSTLISTRPDEGTLSLSRARRAALGSFAGAVVDWYDFLLYGIT AALVFNREFFPQVSPAMGTLAAFATFGVGFLFRPLGGVIFGHFGDRLGRKRMLMLTVW MMGIATALIGILPSFSTIGWWAPILLVTLRAIQGFAVGGEWGGAALLSVESAPKNKKA FYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLGALWVRNG MEESAEFEQQQHYQAAAKKRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNY STQNMGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGTLIGTLSAFPFF MALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVG GGFTPFIAAALITYFAGNWHSVAIYLLAGCLISAMTALLMKDSQRA" gene 13085..14539 /gene="amn" /locus_tag="FFD94_RS03655" /old_locus_tag="HmCmsJML108_00664" CDS 13085..14539 /gene="amn" /locus_tag="FFD94_RS03655" /old_locus_tag="HmCmsJML108_00664" /EC_number="3.2.2.4" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_310806.1" /GO_function="GO:0008714 - AMP nucleosidase activity [Evidence IEA]" /GO_process="GO:0044209 - AMP salvage [Evidence IEA]; GO:0009116 - nucleoside metabolic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="AMP nucleosidase" /protein_id="WP_001060244.1" /translation="MNNKGSGLTPAQALDKLDALYEQSVVALRNAIGNYITSGELPDE NARKQGLFVYPSLTVTWDGSTTNPPKTRAFGRFTHAGSYTTTITRPTLFRSYLNEQLT LLYQDYGAHISVQPSQHEIPYPYVIDGSELTLDRSMSAGLTRYFPTTELAQIGDETAD GIYHPTEFSPLSHFDARRVDFSLARLRHYTGTPVEHFQPFVLFTNYTRYVDEFVRWGC SQILDPDSPYIALSCAGGNWITAETEAPEEAISDLAWKKHQMPAWHLITADGQGITLV NIGVGPSNAKTICDHLAVLRPDVWLMIGHCGGLRESQAIGDYVLAHAYLRDDHVLDAV LPPDIPIPSIAEVQRALYDATKLVSGRPGEEVKQRLRTGTVVTTDDRNWELRYSASAL RFNLSRAVAIDMESATIAAQGYRFRVPYGTLLCVSDKPLHGEIKLPGQANRFYEGAIS EHLQIGIRAIDLLRAEGDRLHSRKLRTFNEPPFR" gene 14893..15609 /gene="yeeN" /locus_tag="FFD94_RS03660" /old_locus_tag="HmCmsJML108_00665" CDS 14893..15609 /gene="yeeN" /locus_tag="FFD94_RS03660" /old_locus_tag="HmCmsJML108_00665" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416490.1" /GO_function="GO:0003677 - DNA binding [Evidence IEA]" /GO_process="GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="YebC/PmpR family DNA-binding transcriptional regulator" /protein_id="WP_000532923.1" /translation="MGRKWANIVAKKTAKDGATSKIYAKFGVEIYAAAKQGEPDPELN TSLKFVIERAKQAQVPKHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMIIAETLTSN VNRTIANVRTIFNKKGGNIGAAGSVSYMFDNTGVIVFKGTDPDHIFEILLEAEVDVRD VTEEEGNIVIYTEPTDLHKGIAALKAAGITEFSTTELEMIAQSEVELSPEDLEIFEGL VDALEDDDDVQKVYHNVANL" gene complement(16062..16137) /locus_tag="FFD94_RS03665" /old_locus_tag="HmCmsJML108_00666" tRNA complement(16062..16137) /locus_tag="FFD94_RS03665" /old_locus_tag="HmCmsJML108_00666" /product="tRNA-Asn" /inference="COORDINATES: profile:tRNAscan-SE:2.0.12" /note="Derived by automated computational analysis using gene prediction method: tRNAscan-SE." /anticodon=(pos:complement(16102..16104),aa:Asn,seq:gtt) gene complement(16238..17738) /gene="yeeO" /locus_tag="FFD94_RS03670" /old_locus_tag="HmCmsJML108_00668" /pseudo CDS complement(16238..17738) /gene="yeeO" /locus_tag="FFD94_RS03670" /old_locus_tag="HmCmsJML108_00668" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001323172.1" /note="frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="toxic metabolite efflux MATE transporter YeeO" gene 17899..17974 /locus_tag="FFD94_RS03675" /old_locus_tag="HmCmsJML108_00669" tRNA 17899..17974 /locus_tag="FFD94_RS03675" /old_locus_tag="HmCmsJML108_00669" /product="tRNA-Asn" /inference="COORDINATES: profile:tRNAscan-SE:2.0.12" /note="Derived by automated computational analysis using gene prediction method: tRNAscan-SE." /anticodon=(pos:17932..17934,aa:Asn,seq:gtt) gene complement(18012..18962) /gene="cbl" /locus_tag="FFD94_RS03680" /old_locus_tag="HmCmsJML108_00670" CDS complement(18012..18962) /gene="cbl" /locus_tag="FFD94_RS03680" /old_locus_tag="HmCmsJML108_00670" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416492.1" /GO_function="GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]" /GO_process="GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="HTH-type transcriptional regulator Cbl" /protein_id="WP_001011006.1" /translation="MNFQQLKIIREAARQDYNLTEVANMLFTSQSGVSRHIRELEDEL GIEIFVRRGKRLLGMTEPGKALLVIAERILNEASNVRRLADLFTNDTSGVLTIATTHT QARYSLPEVIKAFRELFPEVRLELIQGTPQEIATLLQNGEADIGIASERLSNDPQLVA FPWFRWHHSLLVPHDHPLTQISPLTLESIAKWPLITYRQGITGRSRIDDAFARKGLLA DIVLSAQDSDVIKTYVALGLGIGLVAEQSSGEQEEENLIRLDTRHLFDANTVWLGLKR GQLQRNYVWRFLELCNAGLLVEDIKRQVMESSEEEIDYQI" gene complement(19064..19981) /gene="nac" /locus_tag="FFD94_RS03685" /old_locus_tag="HmCmsJML108_00671" CDS complement(19064..19981) /gene="nac" /locus_tag="FFD94_RS03685" /old_locus_tag="HmCmsJML108_00671" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416493.1" /GO_function="GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]" /GO_process="GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="nitrogen assimilation transcriptional regulator NAC" /protein_id="WP_001011462.1" /translation="MNFRRLKYFVKIVDIGSLTQAAEVLHIAQPALSQQVATLEGELN QQLLIRTKRGVTPTDAGKILYTHARAILRQCEQAQLAVHNVGQALSGQVSIGFAPGTA ASSITMPLLQAVRAEFPEIVIYLHENSGAVLNEKLINHQLDMAVIYEHSPVAGVSSQA LLKEDLFLVGTQDCPGQSVDVNAIAQMNLFLPSDYSAIRLRVDEAFSLRRLTAKVIGE IESIATLTAAIASGMGVAVLPESAARSLCGAVNGWMSRITTPSMSLSLSLNLPARANL SPQAQAVKELLMSVISSPVMEKRQWQLVS" gene 20308..20383 /locus_tag="FFD94_RS03690" /old_locus_tag="HmCmsJML108_00672" tRNA 20308..20383 /locus_tag="FFD94_RS03690" /old_locus_tag="HmCmsJML108_00672" /product="tRNA-Asn" /inference="COORDINATES: profile:tRNAscan-SE:2.0.12" /note="Derived by automated computational analysis using gene prediction method: tRNAscan-SE." /anticodon=(pos:20341..20343,aa:Asn,seq:gtt) gene complement(20439..21374) /gene="ldtA" /locus_tag="FFD94_RS03695" /old_locus_tag="HmCmsJML108_00673" CDS complement(20439..21374) /gene="ldtA" /locus_tag="FFD94_RS03695" /old_locus_tag="HmCmsJML108_00673" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_310812.2" /GO_function="GO:0016740 - transferase activity [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="L,D-transpeptidase" /protein_id="WP_000986321.1" /translation="MMRRVNILCSFALLFASHTSLAVTYPLPPEGSRLVGQSFTVTVP DHNTQPLETFAAQYGQGLSNMLEANPGADVFLPKSGSQLTIPQQLILPDTVRKGIVVN VAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRREYA KRGESLPAFVPAGPDNPMGLYAIYIGRLYAIHGTNANFGIGLRVSQGCIRLRNDDIKY LFDNVPVGTRVQIIDQPVKYTTEPDGSNWLEVHEPLSRNRAEYESDRKVPLPVTPSLR AFINGQEVDVNRANAALQRRSGMPVQISSGSRQMF" gene complement(21436..22515) /gene="cobT" /locus_tag="FFD94_RS03700" /old_locus_tag="HmCmsJML108_00674" CDS complement(21436..22515) /gene="cobT" /locus_tag="FFD94_RS03700" /old_locus_tag="HmCmsJML108_00674" /EC_number="2.4.2.21" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416495.1" /GO_function="GO:0008939 - nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity [Evidence IEA]" /GO_process="GO:0009236 - cobalamin biosynthetic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase" /protein_id="WP_001166160.1" /translation="MQILADLLNTIPAIDSTAMSRAQRHIDGLLKPVGSLGKLEVLAI QLAGMPGLNGIPHVGKKAVLVMCADHGVWEEGVAISPKEVTAIQAENMTRGTTGVCVL AEQAGANVHVIDVGIDTAEPIPGLINMRVARGSGNIASAPAMSRRQAEKLLLDVICYT QELAKNGVTLFGVGELGMANTTPAAAIVSTITGRDPEEVVGIGANLPTDKLANKIDVV RRAITLNQPNPQDGVDVLAKVGGFDLVGIAGVMLGAASCGLPVLLDGFLSYAAALAAC QMSPAIKPYLIPSHLSAEKGARIALSHLGLEPYLNMEMRLGEGSGAALAMPIIEAACA IYNNMGELAASNIVLPGNTTSDLNS" gene complement(22527..23270) /gene="cobS" /locus_tag="FFD94_RS03705" /old_locus_tag="HmCmsJML108_00675" CDS complement(22527..23270) /gene="cobS" /locus_tag="FFD94_RS03705" /old_locus_tag="HmCmsJML108_00675" /EC_number="2.7.8.26" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416496.1" /GO_function="GO:0051073 - adenosylcobinamide-GDP ribazoletransferase activity [Evidence IEA]; GO:0008818 - cobalamin 5'-phosphate synthase activity [Evidence IEA]" /GO_process="GO:0009236 - cobalamin biosynthetic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="adenosylcobinamide-GDP ribazoletransferase" /protein_id="WP_016238101.1" /translation="MSKLFWAMLSFITRLPVPRRWSQGLDFEHYSRGIITFPLIGLLL GAISGLVFMVLQAWCGAPLAALFSVLVLVLMTGGFHLDGLADTCDGVFSARSRDRMLE IMRDSRLGTHGGLALIFVVLAKILVLSELALRGESILASLVAACAVSRGTAALLMYRH RYAREEGLGNVFIGKIDGRQTCVTLGLAAIFAAVLLPGMHGVAAMVVTMVAIFILGQL LKRTLGGQTGDTLGAAIELGELVFLLALL" gene complement(23267..23812) /gene="cobU" /locus_tag="FFD94_RS03710" /old_locus_tag="HmCmsJML108_00676" CDS complement(23267..23812) /gene="cobU" /locus_tag="FFD94_RS03710" /old_locus_tag="HmCmsJML108_00676" /EC_number="2.7.1.156" /EC_number="2.7.7.62" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416497.1" /GO_function="GO:0043752 - adenosylcobinamide kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]" /GO_process="GO:0009236 - cobalamin biosynthetic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase" /protein_id="WP_000973176.1" /translation="MMILVTGGARSGKSRHAEALIGDSSQVLYIATSQILDDEMAARI EHHRQGRPEHWRTVERWQHLDELIHADINPNEVVLLECVTTMVTNLLFDYGGDKDPDE WDYQAMEQAINAEIQSLIAACQRCPAKVVLVTNEVGMGIVPESRLARHFRDIAGRVNQ QLAAAANEVWLVVSGIGVKIK" gene complement(23964..>24107) /locus_tag="FFD94_RS27645" /pseudo CDS complement(23964..>24107) /locus_tag="FFD94_RS27645" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001524956.1" /note="incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="cobalamin biosynthesis protein" gene complement(<24116..>24304) /locus_tag="FFD94_RS27650" /pseudo CDS complement(<24116..>24304) /locus_tag="FFD94_RS27650" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_012904641.1" /note="internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="IS4 family transposase" gene 25484..>25984 /locus_tag="FFD94_RS03730" /old_locus_tag="HmCmsJML108_00677" /pseudo CDS 25484..>25984 /locus_tag="FFD94_RS03730" /old_locus_tag="HmCmsJML108_00677" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_310819.1" /note="incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="TonB-dependent receptor plug domain-containing protein" gene complement(<26172..26862) /locus_tag="FFD94_RS03740" /pseudo CDS complement(<26172..26862) /locus_tag="FFD94_RS03740" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_076611483.1" /GO_function="GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]" /GO_process="GO:0006313 - DNA transposition [Evidence IEA]" /note="frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="transposase" gene <26924..27284 /locus_tag="FFD94_RS03745" /pseudo CDS <26924..27284 /locus_tag="FFD94_RS03745" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_000080195.1" /note="frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="transposase" gene 27480..28694 /locus_tag="FFD94_RS03755" /old_locus_tag="HmCmsJML108_00680" /pseudo CDS 27480..28694 /locus_tag="FFD94_RS03755" /old_locus_tag="HmCmsJML108_00680" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_462448.3" /note="internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="PfkB family carbohydrate kinase" gene 28708..29466 /locus_tag="FFD94_RS03760" /old_locus_tag="HmCmsJML108_00681" CDS 28708..29466 /locus_tag="FFD94_RS03760" /old_locus_tag="HmCmsJML108_00681" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001066371.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="glutamine amidotransferase" /protein_id="WP_001066367.1" /translation="MNNTKKSLKVLFIGESWHIHMIHSKGYDSFTSSKYEEGATWLLQ CLKNSQVDVTYMPAHTVQIAFPEDVAQLEQYDAIVISDIGSNTFLLQNDTFYQLRIKP NALELIKEYVNNGGGLLMIGGYLSFMGIEAKANYKNTVLADVLPVTMLDGDDRVEKPE GVIAQPSQPDHPVIKGFSEYPFFLGYNRAIAKENAEVVLTINNDPLLVFGNYHNGKIA CFMSDCSPHWGTQQFMSWPFYTALWVNILTHIAR" gene 29523..30488 /locus_tag="FFD94_RS03765" /old_locus_tag="HmCmsJML108_00682" CDS 29523..30488 /locus_tag="FFD94_RS03765" /old_locus_tag="HmCmsJML108_00682" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001560587.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DMT family transporter" /protein_id="WP_000739825.1" /translation="MKKNKYSTPLWVLATILAGMLSPMQSAVNGQLGHWLQDGNACAV ISFASGLVVMFFIIMARKEIRQQFAAIPSLIKNRKVPLWNWFAGLCGAMVVFSEGASA SALGVATFQTALISALLLSGLLCDRFGIGVDEKKYFTPYRIIGALFAVIATIFVVSPQ WHSTSFILLAILPFLAGLLAGWQPAGNAKVAEATGSMLVSITWNFIVGFCVLGTALAI RVALGHVTVQLPDVWWMYLGGPLGLMSIGLMAILVRGLGLLMLGVASTAGQLLGSVLI DVLIPSLGNTVYLVTIIGTLFALVGAIVTTIPEYRASKTMKKMEV" gene 30491..31525 /locus_tag="FFD94_RS03770" /old_locus_tag="HmCmsJML108_00683" CDS 30491..31525 /locus_tag="FFD94_RS03770" /old_locus_tag="HmCmsJML108_00683" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_462451.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="phosphotriesterase-related protein" /protein_id="WP_000656344.1" /translation="MKDYLQTVTGPVAREDMGLTLPHEHLFNDLSSVVDAPCYPFSQQ LVDKKVTAEIQWALKHDPYCCADNMDRKPIEDVIFEINNFISLGGRTIVDATGSESIG RDAQALREVALKTGLNIVASSGPYLEKFESQRIHKTVDELATTIDKELNQGIGDTDIR AGMIGEIGVSPTFTEAEHNSLRAASLAQINNPHVAMNIHMPGWLRRGDEVLDIVLGEM GVSPNKVSLAHSDPSGKDVAYQRKMLDKGVWLEFDMIGLDITFPKEGIAPGVQETADA VAHLIELGYADQLVLSHDVFLKQMWAKNGGNGWGFVPDVFLAYLAERGVDKTILKKLC IDNPGRLLTA" gene complement(31565..>31857) /locus_tag="FFD94_RS03775" /pseudo CDS complement(31565..>31857) /locus_tag="FFD94_RS03775" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_709217.2" /note="frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="gamma-glutamyltransferase" gene complement(31937..33556) /locus_tag="FFD94_RS03780" /pseudo CDS complement(31937..33556) /locus_tag="FFD94_RS03780" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001368704.1" /GO_function="GO:0004803 - transposase activity [Evidence IEA]" /note="internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="ISL3 family transposase" gene complement(33840..34247) /locus_tag="FFD94_RS03785" /old_locus_tag="HmCmsJML108_00685" CDS complement(33840..34247) /locus_tag="FFD94_RS03785" /old_locus_tag="HmCmsJML108_00685" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_016238421.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="zinc-ribbon domain-containing protein" /protein_id="WP_001221623.1" /translation="MRILNCYMANDSKGHFVTAKEAAKHNRQDVLCCVSCGCPLTLQR GNDGQPPWFEHDQMTVAEKILLRCTWLDPAEKEARRLHLQGMTVPDYTVKVRKWFCVM CDENYEGEKCCPSCGTGVYSREGGQEGNWKDRN" gene complement(34235..34636) /locus_tag="FFD94_RS03790" /old_locus_tag="HmCmsJML108_00686" CDS complement(34235..34636) /locus_tag="FFD94_RS03790" /old_locus_tag="HmCmsJML108_00686" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_004020115.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="putative zinc ribbon protein" /protein_id="WP_000270974.1" /translation="MYAKSFIALDGNGRLTGARTAQAAPYANYTCHLCGSALRYHPQY DTELPWFEHTDDRLTEHGQQCPYVRPERREIQLIKRLQQFVPDALPVVRKASWHCRQC HHDYYGERYCTHCQTGGFSIPRTTQEEICEF" gene complement(34896..35465) /locus_tag="FFD94_RS03795" /old_locus_tag="HmCmsJML108_00687" CDS complement(34896..35465) /locus_tag="FFD94_RS03795" /old_locus_tag="HmCmsJML108_00687" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_000221568.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="inovirus Gp2 family protein" /protein_id="WP_000221530.1" /translation="MTYKYNPFWQQRIRETVRHALNVHPRLTALRVDLRFPDVPAATD AAVISRFINALKARIDAYQKRKHREGKRVHPTTLHYVWAREFGECKGKKHYHLMLLVN RDTWCRAGDYRAPGSLAGMIKQAWCSALGVDVGCHATLVHFPAWPAVWLERDDDTGFQ QVLERADYLAKEHTKAHCTGERNFGCSRS" gene 35665..35865 /locus_tag="FFD94_RS27655" /old_locus_tag="HmCmsJML108_00688" CDS 35665..35865 /locus_tag="FFD94_RS27655" /old_locus_tag="HmCmsJML108_00688" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001297900.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_001297900.1" /translation="MVIRKKKCRDCGNAITHNTVCCPYCGSVDPFGYYRNTDRIVTIL LALIIVVLLTTVSVSVYILCSW" gene <36547..36660 /locus_tag="FFD94_RS27140" /pseudo CDS <36547..36660 /locus_tag="FFD94_RS27140" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_310828.1" /note="incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="DUF945 domain-containing protein" gene 36742..37221 /locus_tag="FFD94_RS03810" /old_locus_tag="HmCmsJML108_00689" CDS 36742..37221 /locus_tag="FFD94_RS03810" /old_locus_tag="HmCmsJML108_00689" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_310829.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="antirestriction protein" /protein_id="WP_000860076.1" /translation="MKTVSQNTPTIYSATTPENNPPQLVASLVPDEQRISFWPQHFGL IPQWVTLEPRVFGWMDRLCEDYCGGIWNLYTLNNGGAFMAPEPDDDDDETWVLFNAMN GNRAEMSPEAAGIAACLMTYSHHACRTENYAMTVHYYRLRDYALQHPECSAIMRIID" gene 37237..>37315 /locus_tag="FFD94_RS27660" /pseudo CDS 37237..>37315 /locus_tag="FFD94_RS27660" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_310830.1" /note="incomplete; too short partial abutting assembly gap; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="hypothetical protein" CONTIG join(BFPU01000030.1:1..37315) //
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