LOCUS NR_015386 3311 bp RNA linear ROD 17-SEP-2024
DEFINITION Mus musculus SIX homeobox 3, opposite strand 1 (Six3os1),
transcript variant 3, long non-coding RNA.
ACCESSION NR_015386
VERSION NR_015386.2
KEYWORDS RefSeq.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 3311)
AUTHORS Song,X., Chen,H., Shang,Z., Du,H., Li,Z., Wen,Y., Liu,G., Qi,D.,
You,Y., Yang,Z., Zhang,Z. and Xu,Z.
TITLE Homeobox Gene Six3 is Required for the Differentiation of D2-Type
Medium Spiny Neurons
JOURNAL Neurosci Bull 37 (7), 985-998 (2021)
PUBMED 34014554
REFERENCE 2 (bases 1 to 3311)
AUTHORS Quintana-Urzainqui,I., Kozic,Z., Mitra,S., Tian,T., Manuel,M.,
Mason,J.O. and Price,D.J.
TITLE Tissue-Specific Actions of Pax6 on Proliferation and
Differentiation Balance in Developing Forebrain Are Foxg1 Dependent
JOURNAL iScience 10, 171-191 (2018)
PUBMED 30529950
REFERENCE 3 (bases 1 to 3311)
AUTHORS Percival,C.J., Green,R., Roseman,C.C., Gatti,D.M., Morgan,J.L.,
Murray,S.A., Donahue,L.R., Mayeux,J.M., Pollard,K.M., Hua,K.,
Pomp,D., Marcucio,R. and Hallgrimsson,B.
TITLE Developmental constraint through negative pleiotropy in the
zygomatic arch
JOURNAL Evodevo 9, 3 (2018)
PUBMED 29423138
REMARK Publication Status: Online-Only
REFERENCE 4 (bases 1 to 3311)
AUTHORS Rapicavoli,N.A., Poth,E.M., Zhu,H. and Blackshaw,S.
TITLE The long noncoding RNA Six3OS acts in trans to regulate retinal
development by modulating Six3 activity
JOURNAL Neural Dev 6, 32 (2011)
PUBMED 21936910
REMARK GeneRIF: Six3OS regulates Six3 activity in developing retina by a
mechanism via which promoter-associated long non-coding RNAs can
modulate the activity of their associated protein coding genes
during development.
Publication Status: Online-Only
REFERENCE 5 (bases 1 to 3311)
AUTHORS Geng,X., Lavado,A., Lagutin,O.V., Liu,W. and Oliver,G.
TITLE Expression of Six3 Opposite Strand (Six3OS) during mouse embryonic
development
JOURNAL Gene Expr Patterns 7 (3), 252-257 (2007)
PUBMED 17084678
REFERENCE 6 (bases 1 to 3311)
AUTHORS Alfano,G., Vitiello,C., Caccioppoli,C., Caramico,T., Carola,A.,
Szego,M.J., McInnes,R.R., Auricchio,A. and Banfi,S.
TITLE Natural antisense transcripts associated with genes involved in eye
development
JOURNAL Hum Mol Genet 14 (7), 913-923 (2005)
PUBMED 15703187
REFERENCE 7 (bases 1 to 3311)
AUTHORS Blackshaw,S., Harpavat,S., Trimarchi,J., Cai,L., Huang,H.,
Kuo,W.P., Weber,G., Lee,K., Fraioli,R.E., Cho,S.H., Yung,R.,
Asch,E., Ohno-Machado,L., Wong,W.H. and Cepko,C.L.
TITLE Genomic analysis of mouse retinal development
JOURNAL PLoS Biol 2 (9), E247 (2004)
PUBMED 15226823
REFERENCE 8 (bases 1 to 3311)
AUTHORS Mu,X., Zhao,S., Pershad,R., Hsieh,T.F., Scarpa,A., Wang,S.W.,
White,R.A., Beremand,P.D., Thomas,T.L., Gan,L. and Klein,W.H.
TITLE Gene expression in the developing mouse retina by EST sequencing
and microarray analysis
JOURNAL Nucleic Acids Res 29 (24), 4983-4993 (2001)
PUBMED 11812828
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
AK053722.1, AY589790.1 and AC166821.2.
On Apr 6, 2011 this sequence version replaced NR_015386.1.
Transcript Variant: This variant (3) lacks an internal segment,
compared to variant 1.
Sequence Note: This RefSeq record was created from transcript and
genomic sequence data to make the sequence consistent with the
reference genome assembly. The genomic coordinates used for the
transcript record were based on transcript alignments.
##Evidence-Data-START##
Transcript exon combination :: AY589790.1, BE949511.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns
SAMN01164138, SAMN01164141
[ECO:0000348]
##Evidence-Data-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-121 AK053722.1 3-123
122-1140 AY589790.1 1-1019
1141-3311 AC166821.2 67003-69173 c
FEATURES Location/Qualifiers
source 1..3311
/organism="Mus musculus"
/mol_type="transcribed RNA"
/strain="C57BL/6"
/db_xref="taxon:10090"
/chromosome="17"
/map="17 55.42 cM"
gene 1..3311
/gene="Six3os1"
/gene_synonym="D17Mgi26; E130112H22Rik; Rncr1; Six3os"
/note="SIX homeobox 3, opposite strand 1"
/db_xref="GeneID:100043902"
/db_xref="MGI:MGI:1925118"
ncRNA 1..3311
/ncRNA_class="lncRNA"
/gene="Six3os1"
/gene_synonym="D17Mgi26; E130112H22Rik; Rncr1; Six3os"
/product="SIX homeobox 3, opposite strand 1, transcript
variant 3"
/db_xref="GeneID:100043902"
/db_xref="MGI:MGI:1925118"
exon 1..340
/gene="Six3os1"
/gene_synonym="D17Mgi26; E130112H22Rik; Rncr1; Six3os"
/inference="alignment:Splign:2.1.0"
exon 341..490
/gene="Six3os1"
/gene_synonym="D17Mgi26; E130112H22Rik; Rncr1; Six3os"
/inference="alignment:Splign:2.1.0"
exon 491..3311
/gene="Six3os1"
/gene_synonym="D17Mgi26; E130112H22Rik; Rncr1; Six3os"
/inference="alignment:Splign:2.1.0"
ORIGIN
1 aaaaccctcg ccactcatga agaactgagg caaaaggatc acagatgctg ctcggggcca
61 gccctatact ccctccagtg cctggtctcc ggtggacccg cggggctctg cagttctctg
121 gcggccgcgc cttgtaagcg ctaagccggg aggagggcgc aggcagggcg cacagctctg
181 agcgcgaccc tacccggctc gggcccgcag caaccccgac tgtccgagag cctctcccca
241 agcaaggctc tgcgccgccc tctgagccca cctcctggcc acaacgctgc ctgcgcttct
301 ccagcccagg ccggaagccc tatgctgcct cccgaagccg gactttctgg aagcccatct
361 tcgtatgctc accagcccac cctcctacgc tggtcagagt gagattgcta acctcaagac
421 cccattcaat gccagctttc aactactgct gaagaccaat gtaggtcctg gaatagaaga
481 actgcagagt atccctaagg tctcctcttc atctggcatg tgtgttcaca gaaggtacag
541 tgtgcgagaa cacacttagg aaattttagg aacgctaacc acagtactgg aggaataaag
601 atgtgtcgaa ggaatggatg gaatgcatga acacatacac cttgttgtcc agatgcagac
661 aaaagctacc atgtccgctt ggagtgacgc ccagacacgc acagagatgt acaggaagcc
721 aaggagagtg ggatccacca gagtacagta caagtacaga gtacagtgca agatgcccag
781 tggccctgga gaaaaacctt cgttgactct tctgtatgga aagtttctga agaaagggcc
841 aaggaatgat ctgccccaga ggctgccttt aggctcccat acctgctctg tttggagaca
901 cccagaagag gccagtacag caaagactct ttttggtttg gttatttctg ttgcttgttg
961 tctttttttc atcctttgcc tgggaaattg tgctctggaa tagggcttga gtagacagca
1021 caggcctcca gtagataaca agagattctc aatctccaat gaggacattc cgttctaagg
1081 aagcttccag ataggggaaa gccctgtttt gtcccccttt tctcctctga gatctgaaaa
1141 aatagaaaga aaaaaaaaga aaaacaaaac aaatataaaa actatagccc aatcccatgt
1201 acatcaaata aatccacaag gaatatgcta gatcaagcta aattatgtat ttaactcatt
1261 ttcttttgtg agatactgag aagtcttcaa cttcctctat tccaggcagg gatcgaggac
1321 ctggcctggc agaggttcca ccaccagggt ttcccacagt ggttctggga ctaggcgtaa
1381 ggtgtcctga cttgttttct ctgtcacctc ttctggggaa ctggggaact gtcccagaca
1441 atggctgccc cagttccctc tagaagagac agcccccacc cccagaaccc gttgccctcc
1501 aacctcacct cattttctct tgagctcatt ctccgagctc ttaaagtagt aggtgtgagt
1561 cttggaccat ttctttaaaa gaaacaacta aggaaaggga gggaggggag gagggaggag
1621 gggagcggga aggagagcta cctcctagac taacgcgtcc aggaaccact ctctaaggag
1681 caaaagagag cctgtgttgt aaagtagaag tgatcccccg acattgctgc agggcgcctt
1741 gcaacagatg taactgtcca ctgaagagac agagggtggg catggggaag attttttttc
1801 ctcccttttg tgaacagctc ttacactttt ccaagacaca ttgagttcct ggacattttt
1861 gtgaatttgt tcttgattgt gttttgaaca ataaactgtg aaaatcaact tcaagcccac
1921 acaatcagaa tctttcttgg gagggcaggt tctttcagcg ctgtttttct ccaggtcgct
1981 tttatcttac ccccaatggg agtcacctgc tgatgctcct cgggaggaga ctgtaactga
2041 aagacggaag tgaatgcaga cacagcatcc tctgagccaa accgttgctt tggttccttc
2101 tagcttagga tgccgaacac tggctggctt tgaacaccct ctacttcgct aagaagttta
2161 gagcctttct cacaacaaac cacagcgttt tagaactgga aatgtttctt ctgattttcc
2221 agtcttagga caattttcga actctaactt aaaaaaaaat ttgtttatgg gggtttagct
2281 agaacacttg tagcattcgc ttctcaagga aagatcaact gttttctcat aaccccaact
2341 gctccacaca cttcatagga tataatgtat tttctttact tatccttgtg ccttctgccc
2401 aggacataga actaggggca aaactttgga ggtctatgac ctcttgatag cacctgtaat
2461 tgttaggctt ttgttcttgt gccttgtaaa tctctcatgt acgtctatga aaatatgcat
2521 tgcatgggtg tgatcctatc aagttgtcca cactttctca acaaccactg atgagtgaaa
2581 ccatttctat tgcccagggc aaagggctaa tcgccttgtg ggtctagagt tgtcatagga
2641 taatatccgg tgtgtgtgtg atatgacagt tattactttc aagaataaat taaaataacc
2701 agatacccct ttaatacttt cctcaacagc gtcaatgctc tagagatggg acctcgcctt
2761 ccaaggtgtc ttcactatca cagggcccgg gctctctgcc tcagcccaac cctgggcttg
2821 cgctcagaga ggaggtattc cgacggaaaa aaatcccata catttttaac tacagtgatt
2881 actaaattaa tagcaggcac caagacagat gtcaaaacgt cttgaaaatg tttatctgtg
2941 aataattgag aaggtagtgg gacgcattat ctgattgtgt aatgaaatat gtatgaggaa
3001 cagctgtttg cagcagcccc ttccccttgc cgccttagcc agggcccttc tctcgcaagc
3061 tttcttctac tttcttccac ctttttcttc cttctacttt ctagttcgct ctcttcttcc
3121 ttaactgctc gcacggcttt ggctgcagtg aacccagagt cgcctggttc tctgatgaag
3181 gttagccaca aggtttcctc taagccttgc tggattggcg ttccgtagtg ggatgaggct
3241 tcgttgtctg ctgttctggc catcgcgcct tccggccagg ctgcccgctg ggtctccatg
3301 gagtctgcgg g
//