LOCUS NM_214820 4065 bp mRNA linear VRT 02-APR-2024
DEFINITION Danio rerio adenylosuccinate synthase 1 (adss1), mRNA.
ACCESSION NM_214820
VERSION NM_214820.1
KEYWORDS RefSeq.
SOURCE Danio rerio (zebrafish)
ORGANISM Danio rerio
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE 1 (bases 1 to 4065)
AUTHORS Kwon,S., Ki,S.M., Park,S.E., Kim,M.J., Hyung,B., Lee,N.K., Shim,S.,
Choi,B.O., Na,D.L., Lee,J.E. and Chang,J.W.
TITLE Anti-apoptotic Effects of Human Wharton's Jelly-derived Mesenchymal
Stem Cells on Skeletal Muscle Cells Mediated via Secretion of XCL1
JOURNAL Mol Ther 24 (9), 1550-1560 (2016)
PUBMED 27434589
REFERENCE 2 (bases 1 to 4065)
AUTHORS Pasquier,J., Cabau,C., Nguyen,T., Jouanno,E., Severac,D.,
Braasch,I., Journot,L., Pontarotti,P., Klopp,C., Postlethwait,J.H.,
Guiguen,Y. and Bobe,J.
TITLE Gene evolution and gene expression after whole genome duplication
in fish: the PhyloFish database
JOURNAL BMC Genomics 17, 368 (2016)
PUBMED 27189481
REMARK Publication Status: Online-Only
REFERENCE 3 (bases 1 to 4065)
AUTHORS Park,H.J., Hong,Y.B., Choi,Y.C., Lee,J., Kim,E.J., Lee,J.S.,
Mo,W.M., Ki,S.M., Kim,H.I., Kim,H.J., Hyun,Y.S., Hong,H.D., Nam,K.,
Jung,S.C., Kim,S.B., Kim,S.H., Kim,D.H., Oh,K.W., Kim,S.H.,
Yoo,J.H., Lee,J.E., Chung,K.W. and Choi,B.O.
TITLE ADSSL1 mutation relevant to autosomal recessive adolescent onset
distal myopathy
JOURNAL Ann Neurol 79 (2), 231-243 (2016)
PUBMED 26506222
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from BC070009.1.
##Evidence-Data-START##
Transcript exon combination :: BC070009.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns
SAMEA3505370, SAMEA3505371
[ECO:0000348]
##Evidence-Data-END##
FEATURES Location/Qualifiers
source 1..4065
/organism="Danio rerio"
/mol_type="mRNA"
/db_xref="taxon:7955"
/chromosome="17"
/map="17"
gene 1..4065
/gene="adss1"
/gene_synonym="AdSS 1; adssl1; zgc:85738"
/note="adenylosuccinate synthase 1"
/db_xref="GeneID:407989"
/db_xref="ZFIN:ZDB-GENE-040516-18"
exon 1..204
/gene="adss1"
/gene_synonym="AdSS 1; adssl1; zgc:85738"
/inference="alignment:Splign:2.1.0"
CDS 16..1386
/gene="adss1"
/gene_synonym="AdSS 1; adssl1; zgc:85738"
/EC_number="6.3.4.4"
/note="adenylosuccinate synthase like 1"
/codon_start=1
/product="adenylosuccinate synthetase isozyme 1"
/protein_id="NP_999985.1"
/db_xref="GeneID:407989"
/db_xref="ZFIN:ZDB-GENE-040516-18"
/translation="MSSGWSQNDHRSYSNPPPVSGKRPRNDSGNKVTVVLGAQWGDEG
KGKVVDLLATESDIVGRCQGGNNAGHTVVVEEKEYDFHLLPSGIINTKCTSFIGNGVV
IHLPGLFEEIDKNEKKGLKGWEKRLVISDRAHIVFDFHQAVDGLQETQRQAQEGKNIG
TTKKGIGPTYACKASRTGLRICDLMADFNEFSTRVKNLVQQYQSMYPTLKVDVESELK
KLKEYAERIRPLVRDGVYFMYDAIHGPQKKILVEGANAALLDIDFGTYPFVTSSNCTV
GGVCTGLGIPPANIGDVYGVSKAYTTRVGIGAFPTEQLNAVGELLQTRGHEVGVTTGR
KRRCGWLDLVILKYAHMINGFTAIALTKLDILDVLDEIKVGVAYKINGKRIPHFPANL
EVLQKVEVEYETFPGWKSDTSAARKWGDLPAKAQNYIRFVENHIGVPIKWVGVGKSRE
CMIQMF"
misc_feature 16..105
/gene="adss1"
/gene_synonym="AdSS 1; adssl1; zgc:85738"
/note="propagated from UniProtKB/Swiss-Prot (Q6NSN5.1);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 403..405
/gene="adss1"
/gene_synonym="AdSS 1; adssl1; zgc:85738"
/note="Phosphoserine.
/evidence=ECO:0000269|PubMed:18307296; propagated from
UniProtKB/Swiss-Prot (Q6NSN5.1); phosphorylation site"
exon 205..307
/gene="adss1"
/gene_synonym="AdSS 1; adssl1; zgc:85738"
/inference="alignment:Splign:2.1.0"
exon 308..370
/gene="adss1"
/gene_synonym="AdSS 1; adssl1; zgc:85738"
/inference="alignment:Splign:2.1.0"
exon 371..421
/gene="adss1"
/gene_synonym="AdSS 1; adssl1; zgc:85738"
/inference="alignment:Splign:2.1.0"
exon 422..488
/gene="adss1"
/gene_synonym="AdSS 1; adssl1; zgc:85738"
/inference="alignment:Splign:2.1.0"
exon 489..596
/gene="adss1"
/gene_synonym="AdSS 1; adssl1; zgc:85738"
/inference="alignment:Splign:2.1.0"
exon 597..678
/gene="adss1"
/gene_synonym="AdSS 1; adssl1; zgc:85738"
/inference="alignment:Splign:2.1.0"
exon 679..805
/gene="adss1"
/gene_synonym="AdSS 1; adssl1; zgc:85738"
/inference="alignment:Splign:2.1.0"
exon 806..960
/gene="adss1"
/gene_synonym="AdSS 1; adssl1; zgc:85738"
/inference="alignment:Splign:2.1.0"
exon 961..1085
/gene="adss1"
/gene_synonym="AdSS 1; adssl1; zgc:85738"
/inference="alignment:Splign:2.1.0"
exon 1086..1183
/gene="adss1"
/gene_synonym="AdSS 1; adssl1; zgc:85738"
/inference="alignment:Splign:2.1.0"
exon 1184..1333
/gene="adss1"
/gene_synonym="AdSS 1; adssl1; zgc:85738"
/inference="alignment:Splign:2.1.0"
exon 1334..4030
/gene="adss1"
/gene_synonym="AdSS 1; adssl1; zgc:85738"
/inference="alignment:Splign:2.1.0"
ORIGIN
1 ctcagactcc tcagcatgtc ctccggctgg tcacagaacg accacaggag ctactcgaac
61 ccgccgccgg tctccggtaa gcggccgagg aacgactcag ggaacaaagt gacggtggtt
121 ctgggagcgc aatggggtga tgaaggaaag ggcaaagttg tggatttact cgccacagag
181 tccgacatcg tgggcaggtg tcagggtgga aataacgccg gccacactgt ggtggtggag
241 gagaaagagt acgatttcca tcttctgcca agtggaataa tcaacaccaa atgcacatca
301 ttcatcggta atggcgtagt cattcacctt ccaggattat ttgaggagat tgacaagaat
361 gagaaaaaag ggctgaaagg atgggagaaa agactggtga tctcagatcg ggctcacatc
421 gtgtttgact ttcatcaggc cgtggacgga cttcaggaga ctcaaagaca agctcaggaa
481 ggcaaaaaca taggaacaac taagaaaggc atcggaccca catacgcctg taaagcgtct
541 cgcactggcc ttcgcatttg tgacctgatg gctgatttca atgagttttc cacaagggtg
601 aagaacctgg tccagcagta ccagtccatg taccctactc tgaaagtgga cgtggagagc
661 gagcttaaga agctaaagga atacgctgag aggataagac cactggtcag agacggtgtc
721 tatttcatgt atgatgcaat tcatgggccg cagaagaaaa ttctggtgga gggagccaac
781 gccgccctgc ttgacattga ctttggaacg tatccttttg tgacgtcgtc taactgcact
841 gttggcggtg tgtgtacggg tctcggcatc cctcctgcaa acatcggcga tgtgtatgga
901 gtgtcaaagg cctacactac tagagttggg atcggggcct ttcctacaga acaactcaat
961 gctgttggtg aactgctgca gaccagaggt catgaggtgg gcgtgaccac aggcagaaag
1021 agacgctgtg gttggctgga tttggttatt cttaaatatg cgcacatgat taatggattc
1081 acagccatcg ctttgactaa actggacatt cttgatgttc tggatgaaat taaagtgggc
1141 gtggcttata agatcaacgg caaaagaatc ccacatttcc cagccaatct ggaggtgctg
1201 cagaaggtgg aggtggagta tgagacgttc cccggctgga aatcagacac ttcagcagcc
1261 agaaagtggg gcgatcttcc tgccaaagca cagaactaca tccgcttcgt ggagaatcac
1321 atcggggttc ccattaaatg ggtcggcgtc ggcaaatcca gagaatgtat gatccagatg
1381 ttttaggatt attacccaca atcctccagt gacgcctgtc tgaagatcag cagcagtgtt
1441 tttgctgacc cccattcact tgcccatcag actccttaaa gggacagttc actgaaaatc
1501 ataattctgg catttactct cccttcacgt gtcccaaacc taattgagtt tccttctttt
1561 gttaaacaca ggtgaagata ttatgaaaaa ttctggaaaa aaacagccat ttgcagccat
1621 agtttttttt tttcatgaag ctttgaaaca ttcacaaatc atttgttttc gaatcagtga
1681 tttcggagca cgtatcaatc agataaagtc atgtcatttc agtaaacgag gctttattac
1741 atcattagtt tgtaaacatt gagataattc aatgtttctc cactgggagg cgatctgtgt
1801 aatattataa catccgcatg aatcacaaaa gtcattcagt ttgtccccta gtggcgaatc
1861 actgaactgc ttcatagttt ttacctgatc tcaagtcagt ttaagatgtt ttaacgaggc
1921 atctgaaatg gaataatggt taataagagt taatattctc ttgttgacct gtttagtaga
1981 gcctattatg taacaaacaa taagtcttga aaactaacgc ataaatgttt aaatattcta
2041 tgcagacact aaatatgtca tgggatggct cagtggttag ctctgtgacc tcaaggcagg
2101 agggtttctg gtttgagttc tggctgggtt tgttggcgtt tctgtgtggg gtttgcatgt
2161 tctccccgtg ttggtgttgg tttcctccgg gaaatttttc agtactgggt tccgactgga
2221 ggggcatcag ctgtgtagaa catatgctgg attagttggc agttcattcc actgtggcga
2281 tccctgataa atcagagact taagctaagg gaaattaatt aaatatgtaa tgatattaaa
2341 tatgctaagt gtatttgtac tgtaggttat agtttcaatt taaaattcac aatgggttag
2401 tgcgttgtag tagcattatg gtgattacgg tgatgcaatt tcaattagat tttcttagtt
2461 tgcaatggtt tttatttaaa aatctgttct aataaatgtt tttgttgcat ttataagtgt
2521 ttcaccagca ggtgtcacta gcacatggtg ttttgaatgc ttcgaaactt attcatttat
2581 ttatttttct ttggcctggt ccaggggtgg gcggtcttgg tcctggaggg ccggtgtcct
2641 gcacagtttg gctccaaccc tattcaaaca gacctccctg tagagttcaa gtgatcttga
2701 agacactgat tagtttgttc aggtgtgttt gactagtgtt ggagcagggc tctgcagggg
2761 cgccggccct cggggatcaa gtttgcccat ccctggccta gtccctttat tcatcagggg
2821 tagccactgt ggaatgaact acaattcttc ctgcatgttt tgcacagctg atgcccttcc
2881 ggccacaacc cagtactgaa aaacacccat acacacacac actcacaaac tacggtcagt
2941 ttagttcatc aatttcccta tagcacatgt gtttggactg tgggggacac cagagcaccc
3001 ggaggaggcc cacggtagca cggggggagg atgcgggctc cgcacgggga cgccggctgg
3061 cccggccggg actcgaaccg gcaaccttct tgctttgagg tgaccactga gccaccgtgt
3121 cacccctaaa aataattatt tattaaaaaa aatgcaatat gtttgctaaa atgagttcta
3181 atggatgttt ttgttgcatt tataagcgtt tgaccagcag gtggcactag cacatggtgt
3241 tttgaatgct tcgaaactca ttcattcatt cattttcctt cggcttagtc cctttattca
3301 tcaggggttg ccacagcaga ataaaccaac tattccggca tgttttacac aacggatact
3361 cttacagccg caacctagaa ctgggaatca cccatacaca ctcattcaca cactacaatc
3421 agtttagttc agcagttccc caatgtgttt ggactgtggg ggaaaccaga gcacccggag
3481 tggagaacaa cacggggaga acatgcaaac tccaatacca actggcccag ctgggactcg
3541 aaccagcgac cttcttgctg gtgacagtgc taaccattgc gccaccgtgc cgcccctaaa
3601 acatagttat atagagaaaa aagttagcac taatttagat aaaaaggagt tctaatgaat
3661 gtttttgtca ccacattatt tggatgctca gaaaccttca tttctccatc actagttcct
3721 actatgagag tcagtggctg cttttctcca acattctcca ttagattttg ttttgtgttc
3781 aacagaagaa agaatcacac gagtaaatga tgaggaaatg gtgaactgtc cctttaagaa
3841 gcgctgtttg atttgatatg agatgtttat gtccaggcat tacgagagaa actcaatgtg
3901 tttacaccag tctttaaaaa acaaatacat gagttgagtt tccaggattc aacttcaccc
3961 aaagtggcat ttctgtatgt tttattgcat ttgttgtttc atgtgagaca cataaactga
4021 actccctgaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa
//