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Danio rerio adenylosuccinate synthase 1 (adss1), mRNA

NCBI Reference Sequence: NM_214820.1

FASTA Graphics 

LOCUS       NM_214820               4065 bp    mRNA    linear   VRT 02-APR-2024
DEFINITION  Danio rerio adenylosuccinate synthase 1 (adss1), mRNA.
ACCESSION   NM_214820
VERSION     NM_214820.1
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 4065)
  AUTHORS   Kwon,S., Ki,S.M., Park,S.E., Kim,M.J., Hyung,B., Lee,N.K., Shim,S.,
            Choi,B.O., Na,D.L., Lee,J.E. and Chang,J.W.
  TITLE     Anti-apoptotic Effects of Human Wharton's Jelly-derived Mesenchymal
            Stem Cells on Skeletal Muscle Cells Mediated via Secretion of XCL1
  JOURNAL   Mol Ther 24 (9), 1550-1560 (2016)
   PUBMED   27434589
REFERENCE   2  (bases 1 to 4065)
  AUTHORS   Pasquier,J., Cabau,C., Nguyen,T., Jouanno,E., Severac,D.,
            Braasch,I., Journot,L., Pontarotti,P., Klopp,C., Postlethwait,J.H.,
            Guiguen,Y. and Bobe,J.
  TITLE     Gene evolution and gene expression after whole genome duplication
            in fish: the PhyloFish database
  JOURNAL   BMC Genomics 17, 368 (2016)
   PUBMED   27189481
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 4065)
  AUTHORS   Park,H.J., Hong,Y.B., Choi,Y.C., Lee,J., Kim,E.J., Lee,J.S.,
            Mo,W.M., Ki,S.M., Kim,H.I., Kim,H.J., Hyun,Y.S., Hong,H.D., Nam,K.,
            Jung,S.C., Kim,S.B., Kim,S.H., Kim,D.H., Oh,K.W., Kim,S.H.,
            Yoo,J.H., Lee,J.E., Chung,K.W. and Choi,B.O.
  TITLE     ADSSL1 mutation relevant to autosomal recessive adolescent onset
            distal myopathy
  JOURNAL   Ann Neurol 79 (2), 231-243 (2016)
   PUBMED   26506222
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC070009.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC070009.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA3505370, SAMEA3505371
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..4065
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /db_xref="taxon:7955"
                     /chromosome="17"
                     /map="17"
     gene            1..4065
                     /gene="adss1"
                     /gene_synonym="AdSS 1; adssl1; zgc:85738"
                     /note="adenylosuccinate synthase 1"
                     /db_xref="GeneID:407989"
                     /db_xref="ZFIN:ZDB-GENE-040516-18"
     exon            1..204
                     /gene="adss1"
                     /gene_synonym="AdSS 1; adssl1; zgc:85738"
                     /inference="alignment:Splign:2.1.0"
     CDS             16..1386
                     /gene="adss1"
                     /gene_synonym="AdSS 1; adssl1; zgc:85738"
                     /EC_number="6.3.4.4"
                     /note="adenylosuccinate synthase like 1"
                     /codon_start=1
                     /product="adenylosuccinate synthetase isozyme 1"
                     /protein_id="NP_999985.1"
                     /db_xref="GeneID:407989"
                     /db_xref="ZFIN:ZDB-GENE-040516-18"
                     /translation="MSSGWSQNDHRSYSNPPPVSGKRPRNDSGNKVTVVLGAQWGDEG
                     KGKVVDLLATESDIVGRCQGGNNAGHTVVVEEKEYDFHLLPSGIINTKCTSFIGNGVV
                     IHLPGLFEEIDKNEKKGLKGWEKRLVISDRAHIVFDFHQAVDGLQETQRQAQEGKNIG
                     TTKKGIGPTYACKASRTGLRICDLMADFNEFSTRVKNLVQQYQSMYPTLKVDVESELK
                     KLKEYAERIRPLVRDGVYFMYDAIHGPQKKILVEGANAALLDIDFGTYPFVTSSNCTV
                     GGVCTGLGIPPANIGDVYGVSKAYTTRVGIGAFPTEQLNAVGELLQTRGHEVGVTTGR
                     KRRCGWLDLVILKYAHMINGFTAIALTKLDILDVLDEIKVGVAYKINGKRIPHFPANL
                     EVLQKVEVEYETFPGWKSDTSAARKWGDLPAKAQNYIRFVENHIGVPIKWVGVGKSRE
                     CMIQMF"
     misc_feature    16..105
                     /gene="adss1"
                     /gene_synonym="AdSS 1; adssl1; zgc:85738"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6NSN5.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    403..405
                     /gene="adss1"
                     /gene_synonym="AdSS 1; adssl1; zgc:85738"
                     /note="Phosphoserine.
                     /evidence=ECO:0000269|PubMed:18307296; propagated from
                     UniProtKB/Swiss-Prot (Q6NSN5.1); phosphorylation site"
     exon            205..307
                     /gene="adss1"
                     /gene_synonym="AdSS 1; adssl1; zgc:85738"
                     /inference="alignment:Splign:2.1.0"
     exon            308..370
                     /gene="adss1"
                     /gene_synonym="AdSS 1; adssl1; zgc:85738"
                     /inference="alignment:Splign:2.1.0"
     exon            371..421
                     /gene="adss1"
                     /gene_synonym="AdSS 1; adssl1; zgc:85738"
                     /inference="alignment:Splign:2.1.0"
     exon            422..488
                     /gene="adss1"
                     /gene_synonym="AdSS 1; adssl1; zgc:85738"
                     /inference="alignment:Splign:2.1.0"
     exon            489..596
                     /gene="adss1"
                     /gene_synonym="AdSS 1; adssl1; zgc:85738"
                     /inference="alignment:Splign:2.1.0"
     exon            597..678
                     /gene="adss1"
                     /gene_synonym="AdSS 1; adssl1; zgc:85738"
                     /inference="alignment:Splign:2.1.0"
     exon            679..805
                     /gene="adss1"
                     /gene_synonym="AdSS 1; adssl1; zgc:85738"
                     /inference="alignment:Splign:2.1.0"
     exon            806..960
                     /gene="adss1"
                     /gene_synonym="AdSS 1; adssl1; zgc:85738"
                     /inference="alignment:Splign:2.1.0"
     exon            961..1085
                     /gene="adss1"
                     /gene_synonym="AdSS 1; adssl1; zgc:85738"
                     /inference="alignment:Splign:2.1.0"
     exon            1086..1183
                     /gene="adss1"
                     /gene_synonym="AdSS 1; adssl1; zgc:85738"
                     /inference="alignment:Splign:2.1.0"
     exon            1184..1333
                     /gene="adss1"
                     /gene_synonym="AdSS 1; adssl1; zgc:85738"
                     /inference="alignment:Splign:2.1.0"
     exon            1334..4030
                     /gene="adss1"
                     /gene_synonym="AdSS 1; adssl1; zgc:85738"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctcagactcc tcagcatgtc ctccggctgg tcacagaacg accacaggag ctactcgaac
       61 ccgccgccgg tctccggtaa gcggccgagg aacgactcag ggaacaaagt gacggtggtt
      121 ctgggagcgc aatggggtga tgaaggaaag ggcaaagttg tggatttact cgccacagag
      181 tccgacatcg tgggcaggtg tcagggtgga aataacgccg gccacactgt ggtggtggag
      241 gagaaagagt acgatttcca tcttctgcca agtggaataa tcaacaccaa atgcacatca
      301 ttcatcggta atggcgtagt cattcacctt ccaggattat ttgaggagat tgacaagaat
      361 gagaaaaaag ggctgaaagg atgggagaaa agactggtga tctcagatcg ggctcacatc
      421 gtgtttgact ttcatcaggc cgtggacgga cttcaggaga ctcaaagaca agctcaggaa
      481 ggcaaaaaca taggaacaac taagaaaggc atcggaccca catacgcctg taaagcgtct
      541 cgcactggcc ttcgcatttg tgacctgatg gctgatttca atgagttttc cacaagggtg
      601 aagaacctgg tccagcagta ccagtccatg taccctactc tgaaagtgga cgtggagagc
      661 gagcttaaga agctaaagga atacgctgag aggataagac cactggtcag agacggtgtc
      721 tatttcatgt atgatgcaat tcatgggccg cagaagaaaa ttctggtgga gggagccaac
      781 gccgccctgc ttgacattga ctttggaacg tatccttttg tgacgtcgtc taactgcact
      841 gttggcggtg tgtgtacggg tctcggcatc cctcctgcaa acatcggcga tgtgtatgga
      901 gtgtcaaagg cctacactac tagagttggg atcggggcct ttcctacaga acaactcaat
      961 gctgttggtg aactgctgca gaccagaggt catgaggtgg gcgtgaccac aggcagaaag
     1021 agacgctgtg gttggctgga tttggttatt cttaaatatg cgcacatgat taatggattc
     1081 acagccatcg ctttgactaa actggacatt cttgatgttc tggatgaaat taaagtgggc
     1141 gtggcttata agatcaacgg caaaagaatc ccacatttcc cagccaatct ggaggtgctg
     1201 cagaaggtgg aggtggagta tgagacgttc cccggctgga aatcagacac ttcagcagcc
     1261 agaaagtggg gcgatcttcc tgccaaagca cagaactaca tccgcttcgt ggagaatcac
     1321 atcggggttc ccattaaatg ggtcggcgtc ggcaaatcca gagaatgtat gatccagatg
     1381 ttttaggatt attacccaca atcctccagt gacgcctgtc tgaagatcag cagcagtgtt
     1441 tttgctgacc cccattcact tgcccatcag actccttaaa gggacagttc actgaaaatc
     1501 ataattctgg catttactct cccttcacgt gtcccaaacc taattgagtt tccttctttt
     1561 gttaaacaca ggtgaagata ttatgaaaaa ttctggaaaa aaacagccat ttgcagccat
     1621 agtttttttt tttcatgaag ctttgaaaca ttcacaaatc atttgttttc gaatcagtga
     1681 tttcggagca cgtatcaatc agataaagtc atgtcatttc agtaaacgag gctttattac
     1741 atcattagtt tgtaaacatt gagataattc aatgtttctc cactgggagg cgatctgtgt
     1801 aatattataa catccgcatg aatcacaaaa gtcattcagt ttgtccccta gtggcgaatc
     1861 actgaactgc ttcatagttt ttacctgatc tcaagtcagt ttaagatgtt ttaacgaggc
     1921 atctgaaatg gaataatggt taataagagt taatattctc ttgttgacct gtttagtaga
     1981 gcctattatg taacaaacaa taagtcttga aaactaacgc ataaatgttt aaatattcta
     2041 tgcagacact aaatatgtca tgggatggct cagtggttag ctctgtgacc tcaaggcagg
     2101 agggtttctg gtttgagttc tggctgggtt tgttggcgtt tctgtgtggg gtttgcatgt
     2161 tctccccgtg ttggtgttgg tttcctccgg gaaatttttc agtactgggt tccgactgga
     2221 ggggcatcag ctgtgtagaa catatgctgg attagttggc agttcattcc actgtggcga
     2281 tccctgataa atcagagact taagctaagg gaaattaatt aaatatgtaa tgatattaaa
     2341 tatgctaagt gtatttgtac tgtaggttat agtttcaatt taaaattcac aatgggttag
     2401 tgcgttgtag tagcattatg gtgattacgg tgatgcaatt tcaattagat tttcttagtt
     2461 tgcaatggtt tttatttaaa aatctgttct aataaatgtt tttgttgcat ttataagtgt
     2521 ttcaccagca ggtgtcacta gcacatggtg ttttgaatgc ttcgaaactt attcatttat
     2581 ttatttttct ttggcctggt ccaggggtgg gcggtcttgg tcctggaggg ccggtgtcct
     2641 gcacagtttg gctccaaccc tattcaaaca gacctccctg tagagttcaa gtgatcttga
     2701 agacactgat tagtttgttc aggtgtgttt gactagtgtt ggagcagggc tctgcagggg
     2761 cgccggccct cggggatcaa gtttgcccat ccctggccta gtccctttat tcatcagggg
     2821 tagccactgt ggaatgaact acaattcttc ctgcatgttt tgcacagctg atgcccttcc
     2881 ggccacaacc cagtactgaa aaacacccat acacacacac actcacaaac tacggtcagt
     2941 ttagttcatc aatttcccta tagcacatgt gtttggactg tgggggacac cagagcaccc
     3001 ggaggaggcc cacggtagca cggggggagg atgcgggctc cgcacgggga cgccggctgg
     3061 cccggccggg actcgaaccg gcaaccttct tgctttgagg tgaccactga gccaccgtgt
     3121 cacccctaaa aataattatt tattaaaaaa aatgcaatat gtttgctaaa atgagttcta
     3181 atggatgttt ttgttgcatt tataagcgtt tgaccagcag gtggcactag cacatggtgt
     3241 tttgaatgct tcgaaactca ttcattcatt cattttcctt cggcttagtc cctttattca
     3301 tcaggggttg ccacagcaga ataaaccaac tattccggca tgttttacac aacggatact
     3361 cttacagccg caacctagaa ctgggaatca cccatacaca ctcattcaca cactacaatc
     3421 agtttagttc agcagttccc caatgtgttt ggactgtggg ggaaaccaga gcacccggag
     3481 tggagaacaa cacggggaga acatgcaaac tccaatacca actggcccag ctgggactcg
     3541 aaccagcgac cttcttgctg gtgacagtgc taaccattgc gccaccgtgc cgcccctaaa
     3601 acatagttat atagagaaaa aagttagcac taatttagat aaaaaggagt tctaatgaat
     3661 gtttttgtca ccacattatt tggatgctca gaaaccttca tttctccatc actagttcct
     3721 actatgagag tcagtggctg cttttctcca acattctcca ttagattttg ttttgtgttc
     3781 aacagaagaa agaatcacac gagtaaatga tgaggaaatg gtgaactgtc cctttaagaa
     3841 gcgctgtttg atttgatatg agatgtttat gtccaggcat tacgagagaa actcaatgtg
     3901 tttacaccag tctttaaaaa acaaatacat gagttgagtt tccaggattc aacttcaccc
     3961 aaagtggcat ttctgtatgt tttattgcat ttgttgtttc atgtgagaca cataaactga
     4021 actccctgaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa
//
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Reference sequence information

  • RefSeq protein product
    See the reference protein sequence for adenylosuccinate synthetase isozyme 1 (NP_999985.1).

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