LOCUS NM_201878 2416 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana Nucleotide-diphospho-sugar transferases
superfamily protein (PGSIP7), mRNA.
ACCESSION NM_201878
VERSION NM_201878.3
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 2416)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 2416)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2416)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 2416)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003071).
On Sep 12, 2016 this sequence version replaced NM_201878.2.
FEATURES Location/Qualifiers
source 1..2416
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
gene 1..2416
/gene="PGSIP7"
/locus_tag="AT2G35710"
/gene_synonym="plant glycogenin-like starch initiation
protein 7; T20F21.27"
/db_xref="Araport:AT2G35710"
/db_xref="GeneID:818140"
/db_xref="TAIR:AT2G35710"
CDS 1118..2287
/gene="PGSIP7"
/locus_tag="AT2G35710"
/gene_synonym="plant glycogenin-like starch initiation
protein 7; T20F21.27"
/inference="Similar to RNA sequence,
EST:INSD:EG460159.1,INSD:EG460173.1,INSD:EG460179.1,
INSD:EG460167.1,INSD:EG460153.1,INSD:EG460154.1,
INSD:EG460175.1,INSD:EG418564.1,INSD:EG418542.1,
INSD:EG460178.1,INSD:EG460186.1,INSD:EG505152.1,
INSD:EG505151.1,INSD:EG505146.1,INSD:EG460170.1,
INSD:EG505144.1,INSD:BP603927.1,INSD:EG460169.1,
INSD:EG460150.1,INSD:EG505143.1,INSD:AV786045.1,
INSD:EG418531.1,INSD:EG460183.1,INSD:AV440620.1,
INSD:EG460155.1,INSD:EG460180.1,INSD:BP655101.1,
INSD:EG460168.1,INSD:EG460164.1,INSD:BP600601.1,
INSD:EG505150.1,INSD:EG418553.1,INSD:EG460184.1"
/inference="similar to RNA sequence, mRNA:INSD:BX820880.1"
/note="Nucleotide-diphospho-sugar transferases superfamily
protein; CONTAINS InterPro DOMAIN/s: Glycosyl transferase,
family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana
protein match is: Nucleotide-diphospho-sugar transferases
superfamily protein (TAIR:AT4G16600.1); Has 35333 Blast
hits to 34131 proteins in 2444 species: Archae - 798;
Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants -
531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
BLink)."
/codon_start=1
/product="Nucleotide-diphospho-sugar transferases
superfamily protein"
/protein_id="NP_973607.1"
/db_xref="Araport:AT2G35710"
/db_xref="GeneID:818140"
/db_xref="TAIR:AT2G35710"
/translation="MSLFVSREEEDGAKVVRVENVDNPYRRQTNFNSRFKLTLNKLYA
WALSDYDRVVMLDADNLFLKKADELFQCGRFCAVFINPCIFHTGLFVLQPSVEVFKDM
LHELQVGRKNPDGADQGFLVSYFSDLLDQPLFSPPSNGSVLNGHLRLPLGYQMDASYF
YLKLRWNIPCGPNSVITFPGAVWLKPWYWWSWPVLPLGFSWHEQRRATIGYSAEMPLV
IIQAMFYLGIIVVTRLARPNITKLCYRRSDRNLTTIQAGFKLIALLSVVAAYIFPFFT
IPHTIHPLIGWSLYLMASFALSSISINTLLLPTLPVLTPWLGILGTLLVMAFPWYPDG
VVRALSVFAYAFCCAPFVWVSFRKITSHLQVLIEKEVLFPRLGDSGVTSGFSKLY"
ORIGIN
1 cagacagata caccttccct ttcctctacg tccttccctg gttggactct tgagtcttga
61 ttcacttttt tctcttagaa attgaagtta gcttagaaaa ttgttcgaat gagacaacga
121 ccaccttatt catagaaaat atcgagacaa aagcatatta gtttttttta ttctatcgtt
181 ttctttctct tgattggctt cacgaattaa aatggaattt tttgagttca ttttttgacc
241 ttactatttt ggtgtaagta aaagttggag agaaacaaat gtttgagtat ttatggttga
301 cagacactta gaccaacgca tttaactcca ttatatcctc tcctattggt cctatatagt
361 atatgacaac gcgcctatct gtatagaaat atatttgtgt tttaaaaaat caattctcaa
421 aaactcgtta ggtgtcatct agttttgaaa aacttctttt gtttttttca tattaagttt
481 ttgattagtt tagtattttt ataagttaaa caacaatttt taaaaacata tttaataggc
541 atgtaggtga attaatcatt tgagtttcta tggacagatt agactaaaac taagtggtcc
601 ggatggtatt aaccaccaaa acaatccagt tttcaaaaat ttagaaataa accatagatt
661 aagtcaacaa ttcattatgc acccaaaaaa gttgaaacag gcgtagagat aaagaatatg
721 gcaactaaaa gcgatcgata gcaataatct tattacattg aattgaaatc atattaactt
781 aaggagagtt gtttgacttt agcgttttga ttgaaacctt ttggaaacaa gaaagagctg
841 tttttttgtg tcaaattact aatttatgac cggccaatct gctgcataga tcatgcaata
901 acgtctacat ctcaacctca tagcctatag taataatttt tgtgtccttt agagcacatc
961 cgataagaaa gataaaccta taataattga aagcaacatt attaggactt tacacaagaa
1021 cttcattttc tgatatgatt cataagaata tatttattct aaaaaacatg catgcataac
1081 tagtttgttt gtacgatgtt tgtgtgtgtg aatactaatg agcctctttg tgagcaggga
1141 agaggaagat ggagctaaag tggtgagagt tgaaaatgtg gataatccat acaggagaca
1201 gaccaacttc aacagtagat tcaagcttac tctaaacaag ctctacgctt gggctttgtc
1261 tgattacgac cgtgtggtca tgctagatgc cgataacctc tttcttaaga aagccgacga
1321 gttgttccag tgtgggcgct tctgtgcggt cttcattaac ccttgtatct tccacactgg
1381 tctcttcgtg ttgcagccat cagtggaagt gttcaaggac atgctccatg agctacaagt
1441 tggaagaaag aatcctgatg gagctgatca aggttttctt gtcagttact tctctgatct
1501 tcttgaccaa cctctcttta gtcctccgag taacggatct gtacttaatg gtcacttgag
1561 acttccctta ggctaccaaa tggacgcttc ttatttctat cttaagctaa gatggaacat
1621 accctgtgga ccaaacagtg tgattacatt cccgggagct gtttggttaa agccatggta
1681 ctggtggtca tggcctgttc ttccactagg tttctcatgg cacgagcagc gtcgcgccac
1741 tatagggtac tcagccgaaa tgcctttggt tataatccaa gcaatgtttt accttggaat
1801 catagtggtt acacgactag ctcgtcctaa cataaccaag ctatgttatc gccgctctga
1861 ccgcaactta acaacgatcc aagctggttt taagttgatc gcgcttctct ctgtagttgc
1921 agcctacatc ttcccattct tcaccatccc tcacactatc cacccactca tcggctggtc
1981 gctctacttg atggcttctt ttgctctctc ttccatttca atcaacactc tcctcctccc
2041 aacgctccct gttctcactc catggctagg aattctcggc actctccttg tcatggcctt
2101 cccttggtac cctgatggag tggtcagagc cttgtcagtt ttcgcatacg cattttgttg
2161 cgcacccttt gtgtgggttt cattccgcaa aatcacatcg cacctccagg ttttgattga
2221 gaaagaggtg ttgttcccgc gattgggaga ctcaggggtc acttcaggct tcagcaaatt
2281 gtattaggga gtctttattt gacatattgt ttctctgtat ataaaggatt attattgttt
2341 cattcacatt acatttatat caactcactc taaccttctt tcttttacct agtcaaagta
2401 tcaatttcgg tagcct
//