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Arabidopsis thaliana Nucleotide-diphospho-sugar transferases superfamily protein (PGSIP7), mRNA

NCBI Reference Sequence: NM_201878.3

FASTA Graphics 

LOCUS       NM_201878               2416 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana Nucleotide-diphospho-sugar transferases
            superfamily protein (PGSIP7), mRNA.
ACCESSION   NM_201878
VERSION     NM_201878.3
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 2416)
  AUTHORS   Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
            Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
            Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
            Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
            Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
            Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
            Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
            Venter,J.C.
  TITLE     Sequence and analysis of chromosome 2 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 761-768 (1999)
   PUBMED   10617197
REFERENCE   2  (bases 1 to 2416)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2416)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 2416)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003071).
            
            On Sep 12, 2016 this sequence version replaced NM_201878.2.
FEATURES             Location/Qualifiers
     source          1..2416
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="2"
                     /ecotype="Columbia"
     gene            1..2416
                     /gene="PGSIP7"
                     /locus_tag="AT2G35710"
                     /gene_synonym="plant glycogenin-like starch initiation
                     protein 7; T20F21.27"
                     /db_xref="Araport:AT2G35710"
                     /db_xref="GeneID:818140"
                     /db_xref="TAIR:AT2G35710"
     CDS             1118..2287
                     /gene="PGSIP7"
                     /locus_tag="AT2G35710"
                     /gene_synonym="plant glycogenin-like starch initiation
                     protein 7; T20F21.27"
                     /inference="Similar to RNA sequence,
                     EST:INSD:EG460159.1,INSD:EG460173.1,INSD:EG460179.1,
                     INSD:EG460167.1,INSD:EG460153.1,INSD:EG460154.1,
                     INSD:EG460175.1,INSD:EG418564.1,INSD:EG418542.1,
                     INSD:EG460178.1,INSD:EG460186.1,INSD:EG505152.1,
                     INSD:EG505151.1,INSD:EG505146.1,INSD:EG460170.1,
                     INSD:EG505144.1,INSD:BP603927.1,INSD:EG460169.1,
                     INSD:EG460150.1,INSD:EG505143.1,INSD:AV786045.1,
                     INSD:EG418531.1,INSD:EG460183.1,INSD:AV440620.1,
                     INSD:EG460155.1,INSD:EG460180.1,INSD:BP655101.1,
                     INSD:EG460168.1,INSD:EG460164.1,INSD:BP600601.1,
                     INSD:EG505150.1,INSD:EG418553.1,INSD:EG460184.1"
                     /inference="similar to RNA sequence, mRNA:INSD:BX820880.1"
                     /note="Nucleotide-diphospho-sugar transferases superfamily
                     protein; CONTAINS InterPro DOMAIN/s: Glycosyl transferase,
                     family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana
                     protein match is: Nucleotide-diphospho-sugar transferases
                     superfamily protein (TAIR:AT4G16600.1); Has 35333 Blast
                     hits to 34131 proteins in 2444 species: Archae - 798;
                     Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants -
                     531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
                     BLink)."
                     /codon_start=1
                     /product="Nucleotide-diphospho-sugar transferases
                     superfamily protein"
                     /protein_id="NP_973607.1"
                     /db_xref="Araport:AT2G35710"
                     /db_xref="GeneID:818140"
                     /db_xref="TAIR:AT2G35710"
                     /translation="MSLFVSREEEDGAKVVRVENVDNPYRRQTNFNSRFKLTLNKLYA
                     WALSDYDRVVMLDADNLFLKKADELFQCGRFCAVFINPCIFHTGLFVLQPSVEVFKDM
                     LHELQVGRKNPDGADQGFLVSYFSDLLDQPLFSPPSNGSVLNGHLRLPLGYQMDASYF
                     YLKLRWNIPCGPNSVITFPGAVWLKPWYWWSWPVLPLGFSWHEQRRATIGYSAEMPLV
                     IIQAMFYLGIIVVTRLARPNITKLCYRRSDRNLTTIQAGFKLIALLSVVAAYIFPFFT
                     IPHTIHPLIGWSLYLMASFALSSISINTLLLPTLPVLTPWLGILGTLLVMAFPWYPDG
                     VVRALSVFAYAFCCAPFVWVSFRKITSHLQVLIEKEVLFPRLGDSGVTSGFSKLY"
ORIGIN      
        1 cagacagata caccttccct ttcctctacg tccttccctg gttggactct tgagtcttga
       61 ttcacttttt tctcttagaa attgaagtta gcttagaaaa ttgttcgaat gagacaacga
      121 ccaccttatt catagaaaat atcgagacaa aagcatatta gtttttttta ttctatcgtt
      181 ttctttctct tgattggctt cacgaattaa aatggaattt tttgagttca ttttttgacc
      241 ttactatttt ggtgtaagta aaagttggag agaaacaaat gtttgagtat ttatggttga
      301 cagacactta gaccaacgca tttaactcca ttatatcctc tcctattggt cctatatagt
      361 atatgacaac gcgcctatct gtatagaaat atatttgtgt tttaaaaaat caattctcaa
      421 aaactcgtta ggtgtcatct agttttgaaa aacttctttt gtttttttca tattaagttt
      481 ttgattagtt tagtattttt ataagttaaa caacaatttt taaaaacata tttaataggc
      541 atgtaggtga attaatcatt tgagtttcta tggacagatt agactaaaac taagtggtcc
      601 ggatggtatt aaccaccaaa acaatccagt tttcaaaaat ttagaaataa accatagatt
      661 aagtcaacaa ttcattatgc acccaaaaaa gttgaaacag gcgtagagat aaagaatatg
      721 gcaactaaaa gcgatcgata gcaataatct tattacattg aattgaaatc atattaactt
      781 aaggagagtt gtttgacttt agcgttttga ttgaaacctt ttggaaacaa gaaagagctg
      841 tttttttgtg tcaaattact aatttatgac cggccaatct gctgcataga tcatgcaata
      901 acgtctacat ctcaacctca tagcctatag taataatttt tgtgtccttt agagcacatc
      961 cgataagaaa gataaaccta taataattga aagcaacatt attaggactt tacacaagaa
     1021 cttcattttc tgatatgatt cataagaata tatttattct aaaaaacatg catgcataac
     1081 tagtttgttt gtacgatgtt tgtgtgtgtg aatactaatg agcctctttg tgagcaggga
     1141 agaggaagat ggagctaaag tggtgagagt tgaaaatgtg gataatccat acaggagaca
     1201 gaccaacttc aacagtagat tcaagcttac tctaaacaag ctctacgctt gggctttgtc
     1261 tgattacgac cgtgtggtca tgctagatgc cgataacctc tttcttaaga aagccgacga
     1321 gttgttccag tgtgggcgct tctgtgcggt cttcattaac ccttgtatct tccacactgg
     1381 tctcttcgtg ttgcagccat cagtggaagt gttcaaggac atgctccatg agctacaagt
     1441 tggaagaaag aatcctgatg gagctgatca aggttttctt gtcagttact tctctgatct
     1501 tcttgaccaa cctctcttta gtcctccgag taacggatct gtacttaatg gtcacttgag
     1561 acttccctta ggctaccaaa tggacgcttc ttatttctat cttaagctaa gatggaacat
     1621 accctgtgga ccaaacagtg tgattacatt cccgggagct gtttggttaa agccatggta
     1681 ctggtggtca tggcctgttc ttccactagg tttctcatgg cacgagcagc gtcgcgccac
     1741 tatagggtac tcagccgaaa tgcctttggt tataatccaa gcaatgtttt accttggaat
     1801 catagtggtt acacgactag ctcgtcctaa cataaccaag ctatgttatc gccgctctga
     1861 ccgcaactta acaacgatcc aagctggttt taagttgatc gcgcttctct ctgtagttgc
     1921 agcctacatc ttcccattct tcaccatccc tcacactatc cacccactca tcggctggtc
     1981 gctctacttg atggcttctt ttgctctctc ttccatttca atcaacactc tcctcctccc
     2041 aacgctccct gttctcactc catggctagg aattctcggc actctccttg tcatggcctt
     2101 cccttggtac cctgatggag tggtcagagc cttgtcagtt ttcgcatacg cattttgttg
     2161 cgcacccttt gtgtgggttt cattccgcaa aatcacatcg cacctccagg ttttgattga
     2221 gaaagaggtg ttgttcccgc gattgggaga ctcaggggtc acttcaggct tcagcaaatt
     2281 gtattaggga gtctttattt gacatattgt ttctctgtat ataaaggatt attattgttt
     2341 cattcacatt acatttatat caactcactc taaccttctt tcttttacct agtcaaagta
     2401 tcaatttcgg tagcct
//
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Reference sequence information

More about the PGSIP7 gene

  • PGSIP7 gene
    Also Known As: AT2G35710, T20F21.27, p...

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