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Arabidopsis thaliana O-fucosyltransferase family protein (AT2G44500), mRNA

NCBI Reference Sequence: NM_130013.4

FASTA Graphics 

LOCUS       NM_130013               2371 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana O-fucosyltransferase family protein
            (AT2G44500), mRNA.
ACCESSION   NM_130013
VERSION     NM_130013.4
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 2371)
  AUTHORS   Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
            Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
            Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
            Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
            Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
            Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
            Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
            Venter,J.C.
  TITLE     Sequence and analysis of chromosome 2 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 761-768 (1999)
   PUBMED   10617197
REFERENCE   2  (bases 1 to 2371)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2371)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 2371)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003071).
            
            On Sep 12, 2016 this sequence version replaced NM_130013.3.
FEATURES             Location/Qualifiers
     source          1..2371
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="2"
                     /ecotype="Columbia"
     gene            1..2371
                     /locus_tag="AT2G44500"
                     /gene_synonym="F4I1.31"
                     /db_xref="Araport:AT2G44500"
                     /db_xref="GeneID:819057"
                     /db_xref="TAIR:AT2G44500"
     CDS             286..2007
                     /locus_tag="AT2G44500"
                     /gene_synonym="F4I1.31"
                     /inference="Similar to RNA sequence,
                     EST:INSD:BP597770.1,INSD:BP560962.1,INSD:BP798053.1,
                     INSD:EL128245.1,INSD:AV820246.1,INSD:CB255170.1,
                     INSD:DR354621.1,INSD:BP824002.1,INSD:EH847016.1,
                     INSD:EL260072.1,INSD:BP799479.1,INSD:BE520571.1,
                     INSD:BP800697.1,INSD:BP608940.1,INSD:AV537740.1,
                     INSD:DR363389.1,INSD:AV547353.1,INSD:BE520246.1,
                     INSD:ES056039.1,INSD:BP601182.1,INSD:CD531677.1,
                     INSD:BP592594.1,INSD:BX834195.1,INSD:EL184113.1,
                     INSD:DR383531.1,INSD:BE521417.1,INSD:BE520245.1,
                     INSD:CD534306.1,INSD:BE521418.1,INSD:AV534254.1,
                     INSD:BP816644.1,INSD:BP567288.1,INSD:BP636884.1,
                     INSD:N96361.1,INSD:BP651721.1,INSD:EL189954.1,
                     INSD:BP856757.1,INSD:ES174535.1,INSD:BP619334.1,
                     INSD:AV557930.1,INSD:ES207054.1,INSD:BX836997.1,
                     INSD:BX837994.1,INSD:EL215602.1,INSD:AV819611.1,
                     INSD:BP606438.1,INSD:EH833376.1,INSD:EL095447.1,
                     INSD:ES190524.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:AK220874.1,INSD:AY093801.1,INSD:AY050384.1,
                     INSD:AF370605.1"
                     /note="O-fucosyltransferase family protein; CONTAINS
                     InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase
                     (InterPro:IPR019378); BEST Arabidopsis thaliana protein
                     match is: O-fucosyltransferase family protein
                     (TAIR:AT3G07900.1); Has 821 Blast hits to 820 proteins in
                     30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
                     0; Plants - 820; Viruses - 0; Other Eukaryotes - 1
                     (source: NCBI BLink)."
                     /codon_start=1
                     /product="O-fucosyltransferase family protein"
                     /protein_id="NP_181978.1"
                     /db_xref="Araport:AT2G44500"
                     /db_xref="GeneID:819057"
                     /db_xref="TAIR:AT2G44500"
                     /translation="MALSKNSNSNSFNKKKVSYISVPSQIINSLSSSSLQSLLVSPKK
                     SSRSTNRFSFSYRNPRIWFFTLFLVSLFGMLKLGFNVDPISLPFSRYPCSTTQQPLSF
                     DGEQNAASHLGLAQEPILSTGSSNSNAIIQLNGGKNETLLTEGDFWKQPDGLGFKPCL
                     GFTSQYRKDSNSILKNRWKYLLVVVSGGMNQQRNQIVDAVVIARILGASLVVPVLQVN
                     VIWGDESEFADIFDLEHFKDVLADDVHIVSSLPSTHVMTRPVEEKRTPLHASPQWIRA
                     HYLKRINRERVLLLRGLDSRLSKDLPSDLQKLRCKVAFQALRFSPRILELGNKLASRM
                     RNQGQYLSLHLRMEKDVWVRTGCLPGLTPEYDEIVNSERERHPELLTGRSNMTYHERK
                     LAGLCPLTALEVTRLLKALEAPKDARIYWAGGEPLGGKEVLEPLTKEFPQFYNKHDLA
                     LPGELEPFANKASVMAAIDYIVCEKSDVFIPSHGGNMGHALQGQRAYAGHKKYITPNK
                     RQMLPYFMNSSLPESDFNRIVKDLHRESLGQPELRMSKAGKDVTKHPVPECMCSDRQQ
                     QEQQSDA"
ORIGIN      
        1 aattaacaaa acagttaaac aaattcaaaa taaaaactgc catgtggtct ctttcttctc
       61 tgtttctctc tcccttcctt taagaacgcg tttgcagact ttgatcagac ttcgcgttcc
      121 cgccgcccat ctccctctct ctctcttttt ctctctcaca cgtttctttt ttgtctctct
      181 ccctgattca tcgccgtagc tgtgtgaccg aacattgctg cgagttcctc aaaacccaaa
      241 tctttcttcc tcaaagactc tgttttttct ttcttccttt cttcaatggc gttatcgaaa
      301 aacagtaaca gtaacagctt taacaagaag aaagtttcgt atatctcagt cccttctcag
      361 atcataaact ctttatcatc ttcctcatta caatctcttc ttgtttctcc caagaaatca
      421 tcaagaagca ccaacagatt cagcttctct tataggaacc ctagaatctg gttctttact
      481 ctcttcctcg tctcactctt tggaatgttg aaactcggtt tcaacgttga cccaatctct
      541 ctccctttct cacgttaccc ttgttcaacg acccaacaac cactaagctt cgacggagaa
      601 caaaacgctg catcccatct tggtttggct caagagccga ttttgtctac tgggtcatcg
      661 aattcgaatg cgattataca attaaacggt ggaaagaacg agactttgtt aacggaaggt
      721 gatttctgga agcaacctga tgggttaggg tttaagccct gtttgggatt tacaagtcaa
      781 tatagaaaag atagcaattc gattttgaag aacagatgga agtatttgct tgttgttgtc
      841 tctggtggga tgaatcagca aaggaatcag attgttgatg ctgttgtgat cgctaggatc
      901 cttggagctt ctttagttgt tcctgttttg caggttaatg tcatttgggg agacgaaagt
      961 gaatttgcgg atatattcga tttggagcat ttcaaggatg ttttagcaga tgatgttcat
     1021 atagtttcgt ctttaccttc tacacatgtt atgacgagac ctgttgaaga gaagaggact
     1081 ccacttcatg cttctcctca atggattcgt gctcattatc ttaagcgaat taacagagaa
     1141 agagttttac ttctccgtgg actcgattca agactctcca aagacctccc ttcagatctt
     1201 cagaaactcc gatgcaaggt tgctttccaa gcgcttagat tttctccgag gattcttgaa
     1261 ctcggtaata aactagcttc aagaatgcgt aaccaaggac agtatctctc acttcatcta
     1321 agaatggaga aagatgtttg ggttagaact ggttgtctcc ctggtttaac tcccgagtac
     1381 gatgaaatag tcaacagcga aagagaacga caccctgagc ttcttaccgg tagatcaaac
     1441 atgacttatc acgagagaaa acttgccggt ttatgccctt taactgctct agaagtcaca
     1501 aggctgctta aagcattaga agctccaaag gatgcgagaa tctattgggc aggaggagag
     1561 cctctaggag gaaaagaggt tttggagcca ctaactaaag aattccctca gttctacaac
     1621 aagcacgatc ttgctttacc tggcgagctt gaaccatttg ccaacaaagc ttcggttatg
     1681 gctgctatag actacattgt ctgcgaaaag agcgatgttt tcataccgtc tcatggagga
     1741 aatatgggac acgcgttaca agggcaaaga gcttacgctg gtcacaagaa atacatcact
     1801 cctaataaga gacagatgct tccttatttc atgaactcgt cgcttcctga atcggatttt
     1861 aacagaattg tgaaagatct tcatcgagaa tcgctaggac agccggagtt gagaatgagc
     1921 aaagctggta aagatgttac aaaacatcct gttccagagt gtatgtgctc ggatagacaa
     1981 caacaagaac aacagtccga tgcttaagcc ttgaaggaca ttttggacat tatttggtgc
     2041 gcggaaaatg aagaagacgc cgattttttc ccgatcaccc ggaagattga ttgaggaaga
     2101 cgattcatgg tggttcgtgc gatattcttt tagttcgggt tttaatctga tcattttttc
     2161 aaaatctttt ggagtaaata tatattcgtt tcaactgagg ttattttttt cttacatgtt
     2221 tttacgatat acgtgagaag tagaatagtg aggttataag atatgattct ttgattcgat
     2281 ttatttgggc tgtaattata tattacagag tttgtatacg gttctagttg tacttgtact
     2341 ataaataaag caacagttaa tcatctcctc c
//
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