LOCUS NM_130013 2371 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana O-fucosyltransferase family protein
(AT2G44500), mRNA.
ACCESSION NM_130013
VERSION NM_130013.4
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 2371)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 2371)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2371)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 2371)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003071).
On Sep 12, 2016 this sequence version replaced NM_130013.3.
FEATURES Location/Qualifiers
source 1..2371
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
gene 1..2371
/locus_tag="AT2G44500"
/gene_synonym="F4I1.31"
/db_xref="Araport:AT2G44500"
/db_xref="GeneID:819057"
/db_xref="TAIR:AT2G44500"
CDS 286..2007
/locus_tag="AT2G44500"
/gene_synonym="F4I1.31"
/inference="Similar to RNA sequence,
EST:INSD:BP597770.1,INSD:BP560962.1,INSD:BP798053.1,
INSD:EL128245.1,INSD:AV820246.1,INSD:CB255170.1,
INSD:DR354621.1,INSD:BP824002.1,INSD:EH847016.1,
INSD:EL260072.1,INSD:BP799479.1,INSD:BE520571.1,
INSD:BP800697.1,INSD:BP608940.1,INSD:AV537740.1,
INSD:DR363389.1,INSD:AV547353.1,INSD:BE520246.1,
INSD:ES056039.1,INSD:BP601182.1,INSD:CD531677.1,
INSD:BP592594.1,INSD:BX834195.1,INSD:EL184113.1,
INSD:DR383531.1,INSD:BE521417.1,INSD:BE520245.1,
INSD:CD534306.1,INSD:BE521418.1,INSD:AV534254.1,
INSD:BP816644.1,INSD:BP567288.1,INSD:BP636884.1,
INSD:N96361.1,INSD:BP651721.1,INSD:EL189954.1,
INSD:BP856757.1,INSD:ES174535.1,INSD:BP619334.1,
INSD:AV557930.1,INSD:ES207054.1,INSD:BX836997.1,
INSD:BX837994.1,INSD:EL215602.1,INSD:AV819611.1,
INSD:BP606438.1,INSD:EH833376.1,INSD:EL095447.1,
INSD:ES190524.1"
/inference="similar to RNA sequence,
mRNA:INSD:AK220874.1,INSD:AY093801.1,INSD:AY050384.1,
INSD:AF370605.1"
/note="O-fucosyltransferase family protein; CONTAINS
InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase
(InterPro:IPR019378); BEST Arabidopsis thaliana protein
match is: O-fucosyltransferase family protein
(TAIR:AT3G07900.1); Has 821 Blast hits to 820 proteins in
30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 820; Viruses - 0; Other Eukaryotes - 1
(source: NCBI BLink)."
/codon_start=1
/product="O-fucosyltransferase family protein"
/protein_id="NP_181978.1"
/db_xref="Araport:AT2G44500"
/db_xref="GeneID:819057"
/db_xref="TAIR:AT2G44500"
/translation="MALSKNSNSNSFNKKKVSYISVPSQIINSLSSSSLQSLLVSPKK
SSRSTNRFSFSYRNPRIWFFTLFLVSLFGMLKLGFNVDPISLPFSRYPCSTTQQPLSF
DGEQNAASHLGLAQEPILSTGSSNSNAIIQLNGGKNETLLTEGDFWKQPDGLGFKPCL
GFTSQYRKDSNSILKNRWKYLLVVVSGGMNQQRNQIVDAVVIARILGASLVVPVLQVN
VIWGDESEFADIFDLEHFKDVLADDVHIVSSLPSTHVMTRPVEEKRTPLHASPQWIRA
HYLKRINRERVLLLRGLDSRLSKDLPSDLQKLRCKVAFQALRFSPRILELGNKLASRM
RNQGQYLSLHLRMEKDVWVRTGCLPGLTPEYDEIVNSERERHPELLTGRSNMTYHERK
LAGLCPLTALEVTRLLKALEAPKDARIYWAGGEPLGGKEVLEPLTKEFPQFYNKHDLA
LPGELEPFANKASVMAAIDYIVCEKSDVFIPSHGGNMGHALQGQRAYAGHKKYITPNK
RQMLPYFMNSSLPESDFNRIVKDLHRESLGQPELRMSKAGKDVTKHPVPECMCSDRQQ
QEQQSDA"
ORIGIN
1 aattaacaaa acagttaaac aaattcaaaa taaaaactgc catgtggtct ctttcttctc
61 tgtttctctc tcccttcctt taagaacgcg tttgcagact ttgatcagac ttcgcgttcc
121 cgccgcccat ctccctctct ctctcttttt ctctctcaca cgtttctttt ttgtctctct
181 ccctgattca tcgccgtagc tgtgtgaccg aacattgctg cgagttcctc aaaacccaaa
241 tctttcttcc tcaaagactc tgttttttct ttcttccttt cttcaatggc gttatcgaaa
301 aacagtaaca gtaacagctt taacaagaag aaagtttcgt atatctcagt cccttctcag
361 atcataaact ctttatcatc ttcctcatta caatctcttc ttgtttctcc caagaaatca
421 tcaagaagca ccaacagatt cagcttctct tataggaacc ctagaatctg gttctttact
481 ctcttcctcg tctcactctt tggaatgttg aaactcggtt tcaacgttga cccaatctct
541 ctccctttct cacgttaccc ttgttcaacg acccaacaac cactaagctt cgacggagaa
601 caaaacgctg catcccatct tggtttggct caagagccga ttttgtctac tgggtcatcg
661 aattcgaatg cgattataca attaaacggt ggaaagaacg agactttgtt aacggaaggt
721 gatttctgga agcaacctga tgggttaggg tttaagccct gtttgggatt tacaagtcaa
781 tatagaaaag atagcaattc gattttgaag aacagatgga agtatttgct tgttgttgtc
841 tctggtggga tgaatcagca aaggaatcag attgttgatg ctgttgtgat cgctaggatc
901 cttggagctt ctttagttgt tcctgttttg caggttaatg tcatttgggg agacgaaagt
961 gaatttgcgg atatattcga tttggagcat ttcaaggatg ttttagcaga tgatgttcat
1021 atagtttcgt ctttaccttc tacacatgtt atgacgagac ctgttgaaga gaagaggact
1081 ccacttcatg cttctcctca atggattcgt gctcattatc ttaagcgaat taacagagaa
1141 agagttttac ttctccgtgg actcgattca agactctcca aagacctccc ttcagatctt
1201 cagaaactcc gatgcaaggt tgctttccaa gcgcttagat tttctccgag gattcttgaa
1261 ctcggtaata aactagcttc aagaatgcgt aaccaaggac agtatctctc acttcatcta
1321 agaatggaga aagatgtttg ggttagaact ggttgtctcc ctggtttaac tcccgagtac
1381 gatgaaatag tcaacagcga aagagaacga caccctgagc ttcttaccgg tagatcaaac
1441 atgacttatc acgagagaaa acttgccggt ttatgccctt taactgctct agaagtcaca
1501 aggctgctta aagcattaga agctccaaag gatgcgagaa tctattgggc aggaggagag
1561 cctctaggag gaaaagaggt tttggagcca ctaactaaag aattccctca gttctacaac
1621 aagcacgatc ttgctttacc tggcgagctt gaaccatttg ccaacaaagc ttcggttatg
1681 gctgctatag actacattgt ctgcgaaaag agcgatgttt tcataccgtc tcatggagga
1741 aatatgggac acgcgttaca agggcaaaga gcttacgctg gtcacaagaa atacatcact
1801 cctaataaga gacagatgct tccttatttc atgaactcgt cgcttcctga atcggatttt
1861 aacagaattg tgaaagatct tcatcgagaa tcgctaggac agccggagtt gagaatgagc
1921 aaagctggta aagatgttac aaaacatcct gttccagagt gtatgtgctc ggatagacaa
1981 caacaagaac aacagtccga tgcttaagcc ttgaaggaca ttttggacat tatttggtgc
2041 gcggaaaatg aagaagacgc cgattttttc ccgatcaccc ggaagattga ttgaggaaga
2101 cgattcatgg tggttcgtgc gatattcttt tagttcgggt tttaatctga tcattttttc
2161 aaaatctttt ggagtaaata tatattcgtt tcaactgagg ttattttttt cttacatgtt
2221 tttacgatat acgtgagaag tagaatagtg aggttataag atatgattct ttgattcgat
2281 ttatttgggc tgtaattata tattacagag tttgtatacg gttctagttg tacttgtact
2341 ataaataaag caacagttaa tcatctcctc c
//