LOCUS NM_129897 1502 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana Radical SAM superfamily protein (BIO2), mRNA.
ACCESSION NM_129897
VERSION NM_129897.4
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1502)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 1502)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1502)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1502)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003071).
On Sep 12, 2016 this sequence version replaced NM_129897.3.
FEATURES Location/Qualifiers
source 1..1502
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
gene 1..1502
/gene="BIO2"
/locus_tag="AT2G43360"
/gene_synonym="BIOB; BIOTIN AUXOTROPH 2; BIOTIN AUXOTROPH
B; BIOTIN SYNTHASE; T1O24.10"
/note="Catalyzes the conversion of dethiobiotin to
biotin."
/db_xref="Araport:AT2G43360"
/db_xref="GeneID:818937"
/db_xref="TAIR:AT2G43360"
CDS 124..1260
/gene="BIO2"
/locus_tag="AT2G43360"
/gene_synonym="BIOB; BIOTIN AUXOTROPH 2; BIOTIN AUXOTROPH
B; BIOTIN SYNTHASE; T1O24.10"
/inference="Similar to RNA sequence,
EST:INSD:AU227927.1,INSD:DR246710.1,INSD:H36418.1,
INSD:DR246716.1,INSD:BP868943.1,INSD:ES097758.1,
INSD:DR246724.1,INSD:EL320387.1,INSD:DR246706.1,
INSD:DR246718.1,INSD:BP854339.1,INSD:EL197101.1,
INSD:ES201462.1,INSD:AA651130.1,INSD:CF773488.1,
INSD:EL224284.1,INSD:BP629319.1,INSD:EH965843.1,
INSD:EH834645.1,INSD:EH941838.1,INSD:BP594240.1,
INSD:AV534384.1,INSD:DR377223.1,INSD:EH864275.1,
INSD:DR246712.1,INSD:DR246722.1,INSD:DR246699.1,
INSD:DR246702.1,INSD:DR246700.1,INSD:DR246719.1,
INSD:BP661483.1,INSD:AV564342.1,INSD:ES142941.1,
INSD:DR246704.1,INSD:EH990106.1,INSD:DR246696.1,
INSD:ES026851.1,INSD:ES047206.1,INSD:DR246708.1,
INSD:BE528489.1,INSD:DR246695.1,INSD:DR246697.1,
INSD:DR246703.1,INSD:DR246694.1,INSD:DR246709.1,
INSD:DR246720.1,INSD:AU236922.1,INSD:DR246715.1,
INSD:DR246705.1,INSD:AA720037.1,INSD:AI998729.1,
INSD:BX839548.1,INSD:DR246701.1,INSD:ES111475.1,
INSD:EL020686.1,INSD:BX835668.1,INSD:DR246711.1,
INSD:DR246714.1,INSD:EL996323.1,INSD:AV556499.1,
INSD:EL241256.1,INSD:ES122996.1,INSD:T20529.1,
INSD:EL224776.1,INSD:BP788591.1,INSD:EH841271.1,
INSD:DR246713.1,INSD:AV561887.1,INSD:DR246707.1,
INSD:ES110855.1,INSD:DR246698.1,INSD:BP667547.1,
INSD:AI994102.1"
/inference="similar to RNA sequence,
mRNA:INSD:AY088152.1,INSD:U31806.1,INSD:BX820829.1,
INSD:L34413.1,INSD:BX818983.1,INSD:BX819210.1,
INSD:BT024899.1,INSD:BT003848.1,INSD:BX820434.1"
/note="BIOTIN AUXOTROPH 2 (BIO2); CONTAINS InterPro
DOMAIN/s: Biotin/thiamin synthesis-associated protein
(InterPro:IPR010722), Aldolase-type TIM barrel
(InterPro:IPR013785), Elongator protein 3/MiaB/NifB
(InterPro:IPR006638), Radical SAM (InterPro:IPR007197),
Biotin synthase (InterPro:IPR002684); Has 5366 Blast hits
to 5366 proteins in 2012 species: Archae - 191; Bacteria -
4453; Metazoa - 6; Fungi - 120; Plants - 75; Viruses - 0;
Other Eukaryotes - 521 (source: NCBI BLink)."
/codon_start=1
/product="Radical SAM superfamily protein"
/protein_id="NP_181864.1"
/db_xref="Araport:AT2G43360"
/db_xref="GeneID:818937"
/db_xref="TAIR:AT2G43360"
/translation="MMLVRSVFRSQLRPSVSGGLQSASCYSSLSAASAEAERTIREGP
RNDWSRDEIKSVYDSPLLDLLFHGAQVHRHVHNFREVQQCTLLSIKTGGCSEDCSYCP
QSSRYSTGVKAQRLMSKDAVIDAAKKAKEAGSTRFCMGAAWRDTIGRKTNFSQILEYI
KEIRGMGMEVCCTLGMIEKQQALELKKAGLTAYNHNLDTSREYYPNVITTRSYDDRLE
TLSHVRDAGINVCSGGIIGLGEAEEDRIGLLHTLATLPSHPESVPINALLAVKGTPLE
DQKPVEIWEMIRMIGTARIVMPKAMVRLSAGRVRFSMSEQALCFLAGANSIFTGEKLL
TTPNNDFDADQLMFKTLGLIPKPPSFSEDDSESENCEKVASASH"
ORIGIN
1 acggtggctg ctttgggtta ggtgaatcac tcactgaaga gtgaaaagct ctagcacaaa
61 ccaaacacca aatctcattt cttcttcttc ttctttttcc acattttctg attagcagat
121 caaatgatgc ttgttcgatc tgtatttcga tctcagttgc gaccctctgt ctcgggtggt
181 ctgcaatctg cttcttgcta ttcttcatta tctgctgctt cagctgaagc tgagaggact
241 atcagagaag gtcccagaaa cgattggagt agagatgaaa tcaagtctgt ttatgattct
301 cctcttcttg acctcctctt ccatggagct caggttcata gacatgttca taacttcagg
361 gaggtacaac aatgtaccct cctctccata aagactggtg gctgtagtga agactgttca
421 tattgtcctc agtcttcgag atatagcact ggagttaagg cacaaagact catgtctaag
481 gacgctgtca ttgatgctgc taagaaggca aaagaagctg ggagcacacg tttttgcatg
541 ggtgctgctt ggcgagatac aattggacgg aaaaccaact tcagccagat tcttgaatac
601 atcaaagaaa taagaggcat ggggatggaa gtttgctgca ccttaggcat gattgagaaa
661 caacaagcac tagagctaaa gaaggctggc ctcactgctt ataaccacaa tcttgatact
721 tcaagagagt actacccaaa cgtcatcact actagaagtt atgacgatcg ccttgaaact
781 cttagccatg ttcgtgatgc tggaatcaac gtttgttcag gaggaatcat agggcttggt
841 gaggcagagg aagacagaat aggtttatta cacacgctgg caacacttcc ttctcaccct
901 gagagtgttc ccattaatgc tctacttgca gtgaaaggca ctcctcttga agaccagaag
961 ccagttgaga tatgggagat gatcaggatg attggaaccg cacgtattgt aatgccaaaa
1021 gcgatggtga gactgtctgc tggtagagtc cggttctcaa tgtccgaaca agctctctgt
1081 ttccttgctg gtgcaaactc tatcttcacc ggagagaagc ttttaaccac accaaacaat
1141 gattttgacg ctgaccagct catgttcaag acattaggcc tcattcctaa accgccaagt
1201 ttctctgaag atgattctga atcagaaaac tgcgagaaag ttgcttccgc ttctcactaa
1261 tatcattatc cacttttttt ttttgtttgg agtcgggaca ctatagagca gtccctttta
1321 ctatgtagca tggtttgacg attttgtgat atcatttttc gttaatcgtt attcgaagat
1381 gtctagattt ctcatctgaa agtaaactta ttattctaga gtgtcatgaa aattgaagag
1441 aaaagttgca attaaatctc tcaaggctga gatgggcttt aaattaggcg taaacttatc
1501 aa
//