U.S. flag

An official website of the United States government

Arabidopsis thaliana GPI-anchored adhesin-like protein, putative (DUF3741) (TRM17), mRNA

NCBI Reference Sequence: NM_127583.5

FASTA Graphics 

LOCUS       NM_127583               2488 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana GPI-anchored adhesin-like protein, putative
            (DUF3741) (TRM17), mRNA.
ACCESSION   NM_127583
VERSION     NM_127583.5
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 2488)
  AUTHORS   Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
            Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
            Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
            Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
            Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
            Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
            Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
            Venter,J.C.
  TITLE     Sequence and analysis of chromosome 2 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 761-768 (1999)
   PUBMED   10617197
REFERENCE   2  (bases 1 to 2488)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2488)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 2488)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003071).
            
            On Sep 12, 2016 this sequence version replaced NM_127583.4.
FEATURES             Location/Qualifiers
     source          1..2488
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="2"
                     /ecotype="Columbia"
     gene            1..2488
                     /gene="TRM17"
                     /locus_tag="AT2G20240"
                     /gene_synonym="F11A3.21; F11A3_21; TON1 Recruiting Motif
                     17"
                     /db_xref="Araport:AT2G20240"
                     /db_xref="GeneID:816543"
                     /db_xref="TAIR:AT2G20240"
     CDS             195..2336
                     /gene="TRM17"
                     /locus_tag="AT2G20240"
                     /gene_synonym="F11A3.21; F11A3_21; TON1 Recruiting Motif
                     17"
                     /inference="Similar to RNA sequence,
                     EST:INSD:EG437018.1,INSD:EG437027.1,INSD:AV810810.1,
                     INSD:EG437138.1,INSD:EG437033.1,INSD:EG436968.1,
                     INSD:EG437141.1,INSD:EG437009.1,INSD:BP629904.1,
                     INSD:EG437032.1,INSD:EG437024.1,INSD:BE522435.1,
                     INSD:EG437004.1,INSD:AV565044.1,INSD:ES215890.1,
                     INSD:EG437135.1,INSD:EL125718.1,INSD:EG437010.1,
                     INSD:EG437031.1,INSD:BE522434.1,INSD:EG437012.1,
                     INSD:EG437037.1,INSD:ES198741.1,INSD:BE524419.1,
                     INSD:EG437011.1,INSD:EG436969.1,INSD:EG436971.1,
                     INSD:EG437025.1,INSD:EG437008.1,INSD:EL070963.1,
                     INSD:AV553833.1,INSD:EG436970.1,INSD:EG437035.1,
                     INSD:EG437137.1,INSD:EG436974.1,INSD:EG437007.1,
                     INSD:EG437023.1,INSD:EH870947.1,INSD:EG437019.1,
                     INSD:EG437036.1,INSD:EG437111.1,INSD:EG436972.1,
                     INSD:ES016692.1,INSD:EG437022.1,INSD:EG437020.1,
                     INSD:EG437005.1,INSD:N96062.1,INSD:EG437026.1,
                     INSD:EG437021.1,INSD:EG437134.1,INSD:EG437136.1,
                     INSD:EG436967.1,INSD:ES025412.1,INSD:EG437029.1,
                     INSD:BP828817.1,INSD:EG437139.1,INSD:EG437030.1,
                     INSD:EH873949.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:DQ056536.1,INSD:AK176059.1,INSD:AY219076.1"
                     /note="Protein of unknown function (DUF3741); CONTAINS
                     InterPro DOMAIN/s: Protein of unknown function DUF3741
                     (InterPro:IPR022212); BEST Arabidopsis thaliana protein
                     match is: Protein of unknown function (DUF3741)
                     (TAIR:AT4G28760.2); Has 343 Blast hits to 303 proteins in
                     41 species: Archae - 0; Bacteria - 9; Metazoa - 36; Fungi
                     - 24; Plants - 254; Viruses - 0; Other Eukaryotes - 20
                     (source: NCBI BLink)."
                     /codon_start=1
                     /product="GPI-anchored adhesin-like protein, putative
                     (DUF3741)"
                     /protein_id="NP_179614.1"
                     /db_xref="Araport:AT2G20240"
                     /db_xref="GeneID:816543"
                     /db_xref="TAIR:AT2G20240"
                     /translation="MPDLRPGVFSKSKETSTESMKKLIAREMSKDVVEDRQSSNNVVA
                     KLMGLETSAPRSRSKSSSRCSLTCVGSKEAGKHHREDETWDQKASNLSSKASMSDKQM
                     DLVRRKFMEAKHLVTDDRLHRSSELQEALQVLSSNKDLFVKFLQESNSLFPQHLSDFQ
                     PVPPHPDAKRITVLRPSKAVGVQKCLAEDSKKPASLNQETGWIDAVQPTRIVVLKPSP
                     GKSLDIKAIASSPPYFDEAGDAETREVAKEITRQIRETVEGHCRNETLSSSSSSVLSN
                     GYMGDDCSLNRSNYEYLVGNITNSEIMSPSSRHSWDCANKFESPFSSSSLSRVSFSPD
                     SSVYREAKKRLSERWAMMSLNGDTQQPKNFPKVSTALGEVLALSETKVPTGSSEETNK
                     VKQETRRSISCIGSGLDQVESTSDSLNILERSRSVPEIRLNGGTSKAQAPQELTESRS
                     LKSSWKVSSLFFFRNKKSNKDKTFAPSQLAIHRDAFQEQRIFTSEGDVENENQDQPSP
                     VSVLQPAFEEECSGSVKPKTTQGEEMSLKSNLIDKSPPIGTIARILAWEDESYTDTSK
                     PAMGIEEDEDWYGFIKTLLTASGFSGSDSLMTRWHSLESPLDPSLRDKFANKELIKRR
                     KQRSNRKLVFDCVNAIITETTSTLAHTGLTKGFNMLEHVWTELQEWAVNDEVAGKMWS
                     YGLQVEMNNLGIEIEVILLQELVEEAVFDLI"
ORIGIN      
        1 atcagaagac gacgtcatcc ccttaaaaag ctcttcctgt tagattcaca taaatcttct
       61 ccggccaaag ctatttctcc gacgacgtca gagcttgaca atgtttctaa atctagctac
      121 ctactaacag aaatcagtga gagtggatct gatgctgtag ctgaattgag aagaagcttt
      181 tcattgaggt tgttatgcct gatttgaggc caggtgtttt tagcaaatcg aaagagacaa
      241 gtactgaatc tatgaaaaag ctcattgctc gagaaatgtc gaaagatgtt gttgaagata
      301 gacagagttc taacaatgta gttgctaaac taatgggtct agagacttct gcaccaagga
      361 gcagatccaa aagctcttca cgttgttcgt tgacttgtgt tggtagtaag gaagctggta
      421 agcatcatag agaagatgaa acctgggatc aaaaggcgag caacctttca agtaaagcaa
      481 gtatgagtga taaacagatg gatcttgttc gtcgaaagtt catggaagct aaacacttgg
      541 taacagatga taggcttcat aggtccagtg agttacaaga agcactccaa gttttaagtt
      601 ctaacaaaga tttgttcgtt aagtttctcc aggaatcaaa ttctttgttt ccacagcatc
      661 tttctgactt tcaaccagtt cctcctcatc cagatgctaa gcgcattacg gtattgagac
      721 cttcaaaggc tgttggtgtt cagaaatgtt tggctgaaga tagtaagaaa ccagcttctt
      781 tgaatcagga aactggatgg atcgatgctg tgcagccaac tcggatagtt gttttgaagc
      841 ctagtcctgg aaagtctcta gatataaagg ctattgcttc atcacctcct tattttgatg
      901 aggctggaga tgctgagacc agagaagtgg caaaggaaat tacacgtcaa atacgtgaaa
      961 ctgtggaggg tcattgcagg aacgagaccc tttcttcttc ttcttcttcc gtcttgtcca
     1021 atggctatat gggtgatgat tgttcgttaa acaggtcaaa ttacgaatat ctagtgggaa
     1081 atattaccaa ctctgagatc atgtcaccat cctctaggca ttcatgggac tgtgcaaaca
     1141 agtttgagag tcctttttct tcgtcttcgt tgagccgagt ctcgttttct ccagactcat
     1201 ctgtctacag agaggcaaag aaacggcttt ctgagagatg ggcaatgatg tcactaaacg
     1261 gagacacaca gcaaccaaaa aacttcccca aggtttcaac ggccttaggc gaagtacttg
     1321 cactttcaga gacgaaagta cctaccggat ccagtgaaga gaccaacaaa gtgaaacaag
     1381 aaacgagacg atcaatctca tgcataggca gtggtctaga tcaagtagaa agcacaagtg
     1441 attctctgaa tatccttgaa aggtcaagat cagtccctga gattaggctc aatggtggaa
     1501 cttcaaaagc gcaagctccc caagagctta cggagtcaag aagcttaaag tcatcatgga
     1561 aagtttcaag cttgttcttc ttccggaata aaaaatcaaa caaggacaag acatttgcac
     1621 cgtctcaatt ggctatacac cgtgatgcat tccaagaaca acgtattttt acaagcgagg
     1681 gtgatgtgga aaatgaaaac caggaccagc cgagtccagt ttcggtttta cagccggctt
     1741 tcgaagagga atgttcgggg tcagtaaagc caaagaccac tcaaggagaa gaaatgtctc
     1801 tgaaatctaa tctgattgac aaatcacctc ctatcggaac aatcgctcgg attctcgcat
     1861 gggaggatga gtcatacaca gacactagta aacccgcaat gggaatcgag gaagatgaag
     1921 actggtatgg cttcatcaaa acgctcttaa cagcgtctgg tttcagcggt agtgactcgc
     1981 ttatgacccg ttggcactca ctggagagcc cattagaccc atcattgaga gacaaatttg
     2041 ccaacaagga actcatcaaa cgcagaaaac agagatcaaa ccgcaaactc gtttttgact
     2101 gtgttaatgc catcataaca gagacaacat caacacttgc gcacaccggc ttgaccaagg
     2161 gatttaacat gttggagcat gtttggacag agttacagga atgggcggtt aatgacgagg
     2221 ttgctgggaa aatgtggagt tatggtctac aagtcgaaat gaacaatttg gggattgaaa
     2281 ttgaagtgat attgctgcaa gagcttgttg aagaagcagt cttcgatctt atctgatgaa
     2341 acaacgtata tacgttaata taagcttttg taataatgaa acatatatag atgatataat
     2401 ctaagaaaga gtttaaccta catatacatt ttacattaat ctgtttatga tgtccaattc
     2461 aatttttagt tttgttttct tcattata
//
Feature
Display: FASTA GenBank Help
Details

Supplemental Content

Change region shown

Customize view

Reference sequence information

  • RefSeq protein product
    See the reference protein sequence for GPI-anchored adhesin-like protein, putative (DUF3741) (NP_179614.1).

More about the TRM17 gene

  • TRM17 gene
    Also Known As: AT2G20240, F11A3.21, F1...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
External link. Please review our privacy policy.