LOCUS NM_127583 2488 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana GPI-anchored adhesin-like protein, putative
(DUF3741) (TRM17), mRNA.
ACCESSION NM_127583
VERSION NM_127583.5
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 2488)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 2488)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2488)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 2488)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003071).
On Sep 12, 2016 this sequence version replaced NM_127583.4.
FEATURES Location/Qualifiers
source 1..2488
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
gene 1..2488
/gene="TRM17"
/locus_tag="AT2G20240"
/gene_synonym="F11A3.21; F11A3_21; TON1 Recruiting Motif
17"
/db_xref="Araport:AT2G20240"
/db_xref="GeneID:816543"
/db_xref="TAIR:AT2G20240"
CDS 195..2336
/gene="TRM17"
/locus_tag="AT2G20240"
/gene_synonym="F11A3.21; F11A3_21; TON1 Recruiting Motif
17"
/inference="Similar to RNA sequence,
EST:INSD:EG437018.1,INSD:EG437027.1,INSD:AV810810.1,
INSD:EG437138.1,INSD:EG437033.1,INSD:EG436968.1,
INSD:EG437141.1,INSD:EG437009.1,INSD:BP629904.1,
INSD:EG437032.1,INSD:EG437024.1,INSD:BE522435.1,
INSD:EG437004.1,INSD:AV565044.1,INSD:ES215890.1,
INSD:EG437135.1,INSD:EL125718.1,INSD:EG437010.1,
INSD:EG437031.1,INSD:BE522434.1,INSD:EG437012.1,
INSD:EG437037.1,INSD:ES198741.1,INSD:BE524419.1,
INSD:EG437011.1,INSD:EG436969.1,INSD:EG436971.1,
INSD:EG437025.1,INSD:EG437008.1,INSD:EL070963.1,
INSD:AV553833.1,INSD:EG436970.1,INSD:EG437035.1,
INSD:EG437137.1,INSD:EG436974.1,INSD:EG437007.1,
INSD:EG437023.1,INSD:EH870947.1,INSD:EG437019.1,
INSD:EG437036.1,INSD:EG437111.1,INSD:EG436972.1,
INSD:ES016692.1,INSD:EG437022.1,INSD:EG437020.1,
INSD:EG437005.1,INSD:N96062.1,INSD:EG437026.1,
INSD:EG437021.1,INSD:EG437134.1,INSD:EG437136.1,
INSD:EG436967.1,INSD:ES025412.1,INSD:EG437029.1,
INSD:BP828817.1,INSD:EG437139.1,INSD:EG437030.1,
INSD:EH873949.1"
/inference="similar to RNA sequence,
mRNA:INSD:DQ056536.1,INSD:AK176059.1,INSD:AY219076.1"
/note="Protein of unknown function (DUF3741); CONTAINS
InterPro DOMAIN/s: Protein of unknown function DUF3741
(InterPro:IPR022212); BEST Arabidopsis thaliana protein
match is: Protein of unknown function (DUF3741)
(TAIR:AT4G28760.2); Has 343 Blast hits to 303 proteins in
41 species: Archae - 0; Bacteria - 9; Metazoa - 36; Fungi
- 24; Plants - 254; Viruses - 0; Other Eukaryotes - 20
(source: NCBI BLink)."
/codon_start=1
/product="GPI-anchored adhesin-like protein, putative
(DUF3741)"
/protein_id="NP_179614.1"
/db_xref="Araport:AT2G20240"
/db_xref="GeneID:816543"
/db_xref="TAIR:AT2G20240"
/translation="MPDLRPGVFSKSKETSTESMKKLIAREMSKDVVEDRQSSNNVVA
KLMGLETSAPRSRSKSSSRCSLTCVGSKEAGKHHREDETWDQKASNLSSKASMSDKQM
DLVRRKFMEAKHLVTDDRLHRSSELQEALQVLSSNKDLFVKFLQESNSLFPQHLSDFQ
PVPPHPDAKRITVLRPSKAVGVQKCLAEDSKKPASLNQETGWIDAVQPTRIVVLKPSP
GKSLDIKAIASSPPYFDEAGDAETREVAKEITRQIRETVEGHCRNETLSSSSSSVLSN
GYMGDDCSLNRSNYEYLVGNITNSEIMSPSSRHSWDCANKFESPFSSSSLSRVSFSPD
SSVYREAKKRLSERWAMMSLNGDTQQPKNFPKVSTALGEVLALSETKVPTGSSEETNK
VKQETRRSISCIGSGLDQVESTSDSLNILERSRSVPEIRLNGGTSKAQAPQELTESRS
LKSSWKVSSLFFFRNKKSNKDKTFAPSQLAIHRDAFQEQRIFTSEGDVENENQDQPSP
VSVLQPAFEEECSGSVKPKTTQGEEMSLKSNLIDKSPPIGTIARILAWEDESYTDTSK
PAMGIEEDEDWYGFIKTLLTASGFSGSDSLMTRWHSLESPLDPSLRDKFANKELIKRR
KQRSNRKLVFDCVNAIITETTSTLAHTGLTKGFNMLEHVWTELQEWAVNDEVAGKMWS
YGLQVEMNNLGIEIEVILLQELVEEAVFDLI"
ORIGIN
1 atcagaagac gacgtcatcc ccttaaaaag ctcttcctgt tagattcaca taaatcttct
61 ccggccaaag ctatttctcc gacgacgtca gagcttgaca atgtttctaa atctagctac
121 ctactaacag aaatcagtga gagtggatct gatgctgtag ctgaattgag aagaagcttt
181 tcattgaggt tgttatgcct gatttgaggc caggtgtttt tagcaaatcg aaagagacaa
241 gtactgaatc tatgaaaaag ctcattgctc gagaaatgtc gaaagatgtt gttgaagata
301 gacagagttc taacaatgta gttgctaaac taatgggtct agagacttct gcaccaagga
361 gcagatccaa aagctcttca cgttgttcgt tgacttgtgt tggtagtaag gaagctggta
421 agcatcatag agaagatgaa acctgggatc aaaaggcgag caacctttca agtaaagcaa
481 gtatgagtga taaacagatg gatcttgttc gtcgaaagtt catggaagct aaacacttgg
541 taacagatga taggcttcat aggtccagtg agttacaaga agcactccaa gttttaagtt
601 ctaacaaaga tttgttcgtt aagtttctcc aggaatcaaa ttctttgttt ccacagcatc
661 tttctgactt tcaaccagtt cctcctcatc cagatgctaa gcgcattacg gtattgagac
721 cttcaaaggc tgttggtgtt cagaaatgtt tggctgaaga tagtaagaaa ccagcttctt
781 tgaatcagga aactggatgg atcgatgctg tgcagccaac tcggatagtt gttttgaagc
841 ctagtcctgg aaagtctcta gatataaagg ctattgcttc atcacctcct tattttgatg
901 aggctggaga tgctgagacc agagaagtgg caaaggaaat tacacgtcaa atacgtgaaa
961 ctgtggaggg tcattgcagg aacgagaccc tttcttcttc ttcttcttcc gtcttgtcca
1021 atggctatat gggtgatgat tgttcgttaa acaggtcaaa ttacgaatat ctagtgggaa
1081 atattaccaa ctctgagatc atgtcaccat cctctaggca ttcatgggac tgtgcaaaca
1141 agtttgagag tcctttttct tcgtcttcgt tgagccgagt ctcgttttct ccagactcat
1201 ctgtctacag agaggcaaag aaacggcttt ctgagagatg ggcaatgatg tcactaaacg
1261 gagacacaca gcaaccaaaa aacttcccca aggtttcaac ggccttaggc gaagtacttg
1321 cactttcaga gacgaaagta cctaccggat ccagtgaaga gaccaacaaa gtgaaacaag
1381 aaacgagacg atcaatctca tgcataggca gtggtctaga tcaagtagaa agcacaagtg
1441 attctctgaa tatccttgaa aggtcaagat cagtccctga gattaggctc aatggtggaa
1501 cttcaaaagc gcaagctccc caagagctta cggagtcaag aagcttaaag tcatcatgga
1561 aagtttcaag cttgttcttc ttccggaata aaaaatcaaa caaggacaag acatttgcac
1621 cgtctcaatt ggctatacac cgtgatgcat tccaagaaca acgtattttt acaagcgagg
1681 gtgatgtgga aaatgaaaac caggaccagc cgagtccagt ttcggtttta cagccggctt
1741 tcgaagagga atgttcgggg tcagtaaagc caaagaccac tcaaggagaa gaaatgtctc
1801 tgaaatctaa tctgattgac aaatcacctc ctatcggaac aatcgctcgg attctcgcat
1861 gggaggatga gtcatacaca gacactagta aacccgcaat gggaatcgag gaagatgaag
1921 actggtatgg cttcatcaaa acgctcttaa cagcgtctgg tttcagcggt agtgactcgc
1981 ttatgacccg ttggcactca ctggagagcc cattagaccc atcattgaga gacaaatttg
2041 ccaacaagga actcatcaaa cgcagaaaac agagatcaaa ccgcaaactc gtttttgact
2101 gtgttaatgc catcataaca gagacaacat caacacttgc gcacaccggc ttgaccaagg
2161 gatttaacat gttggagcat gtttggacag agttacagga atgggcggtt aatgacgagg
2221 ttgctgggaa aatgtggagt tatggtctac aagtcgaaat gaacaatttg gggattgaaa
2281 ttgaagtgat attgctgcaa gagcttgttg aagaagcagt cttcgatctt atctgatgaa
2341 acaacgtata tacgttaata taagcttttg taataatgaa acatatatag atgatataat
2401 ctaagaaaga gtttaaccta catatacatt ttacattaat ctgtttatga tgtccaattc
2461 aatttttagt tttgttttct tcattata
//