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Arabidopsis thaliana Tetratricopeptide repeat (TPR)-like superfamily protein (AT2G04860), partial mRNA

NCBI Reference Sequence: NM_126518.3

FASTA Graphics 

LOCUS       NM_126518               2140 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana Tetratricopeptide repeat (TPR)-like
            superfamily protein (AT2G04860), partial mRNA.
ACCESSION   NM_126518
VERSION     NM_126518.3
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 2140)
  AUTHORS   Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
            Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
            Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
            Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
            Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
            Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
            Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
            Venter,J.C.
  TITLE     Sequence and analysis of chromosome 2 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 761-768 (1999)
   PUBMED   10617197
REFERENCE   2  (bases 1 to 2140)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2140)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 2140)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003071).
            
            On Sep 12, 2016 this sequence version replaced NM_126518.2.
            COMPLETENESS: incomplete on the 3' end.
FEATURES             Location/Qualifiers
     source          1..2140
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="2"
                     /ecotype="Columbia"
     gene            1..>2140
                     /locus_tag="AT2G04860"
                     /gene_synonym="F28I8.8; F28I8_8"
                     /db_xref="Araport:AT2G04860"
                     /db_xref="GeneID:815032"
                     /db_xref="TAIR:AT2G04860"
     CDS             62..2140
                     /locus_tag="AT2G04860"
                     /gene_synonym="F28I8.8; F28I8_8"
                     /inference="Similar to RNA sequence, EST:INSD:EG457721.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:DQ446469.1,INSD:DQ652961.1"
                     /note="Tetratricopeptide repeat (TPR)-like superfamily
                     protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide
                     repeat (InterPro:IPR002885); BEST Arabidopsis thaliana
                     protein match is: Pentatricopeptide repeat (PPR)
                     superfamily protein (TAIR:AT1G18485.1); Has 40750 Blast
                     hits to 12883 proteins in 192 species: Archae - 0;
                     Bacteria - 0; Metazoa - 53; Fungi - 56; Plants - 40225;
                     Viruses - 0; Other Eukaryotes - 416 (source: NCBI BLink)."
                     /codon_start=1
                     /product="Tetratricopeptide repeat (TPR)-like superfamily
                     protein"
                     /protein_id="NP_178563.2"
                     /db_xref="Araport:AT2G04860"
                     /db_xref="GeneID:815032"
                     /db_xref="TAIR:AT2G04860"
                     /translation="MRITKPITLYRDLSYFHSLLKSCIHGEISSSPITIFRDLLRSSL
                     TPNHFTMSIFLQATTTSFNSFKLQVEQVQTHLTKSGLDRFVYVKTSLLNLYLKKGCVT
                     SAQMLFDEMPERDTVVWNALICGYSRNGYECDAWKLFIVMLQQGFSPSATTLVNLLPF
                     CGQCGFVSQGRSVHGVAAKSGLELDSQVKNALISFYSKCAELGSAEVLFREMKDKSTV
                     SWNTMIGAYSQSGLQEEAITVFKNMFEKNVEISPVTIINLLSAHVSHEPLHCLVVKCG
                     MVNDISVVTSLVCAYSRCGCLVSAERLYASAKQDSIVGLTSIVSCYAEKGDMDIAVVY
                     FSKTRQLCMKIDAVALVGILHGCKKSSHIDIGMSLHGYAIKSGLCTKTLVVNGLITMY
                     SKFDDVETVLFLFEQLQETPLISWNSVISGCVQSGRASTAFEVFHQMMLTGGLLPDAI
                     TIASLLAGCSQLCCLNLGKELHGYTLRNNFENENFVCTALIDMYAKCGNEVQAESVFK
                     SIKAPCTATWNSMISGYSLSGLQHRALSCYLEMREKGLKPDEITFLGVLSACNHGGFV
                     DEGKICFRAMIKEFGISPTLQHYALMVGLLGRACLFTEALYLIWKMDIKPDSAVWGAL
                     LSACIIHRELEVGEYVARKMFMLDYKNGGLYVLMSNLYATEAMWDDVVRVRNMMKDNG
                     YDGYLGVSQI"
ORIGIN      
        1 cacaagttct aataattccg acacaaggaa ataaagctag aggagacaga acagagatag
       61 tatgcgcatt accaaaccca taactctata tagagacctt tcttacttcc attctctact
      121 aaaatcttgt atccatggtg aaatctcttc ttctccaatc actatcttcc gtgacttact
      181 ccgttcctct cttacaccaa atcatttcac tatgtctatc tttctccaag ccactactac
      241 ctctttcaat tccttcaagt tacaagtcga acaagtccaa acccatctca caaaatcagg
      301 tcttgatcgg ttcgtatacg tgaaaacatc tcttcttaat ctctacttga agaagggttg
      361 cgtaacgagt gcacaaatgt tgttcgatga aatgcctgag agagatacag ttgtttggaa
      421 tgcattgatt tgtgggtatt cacgaaatgg ttatgagtgt gatgcgtgga agctttttat
      481 cgtaatgctt cagcaagggt tttctccatc tgctactaca cttgtgaatt tgttaccttt
      541 ttgtggacaa tgtggttttg tatctcaagg gagatctgtt catggtgttg ctgcaaagtc
      601 tggccttgag ttggattctc aggtgaagaa tgcgttgatt tcgttttact caaagtgtgc
      661 agagttgggt tcagcagaag tcttgtttag agaaatgaaa gataaaagca cagtttcttg
      721 gaatacaatg attggtgcct atagccagag tggtttacag gaagaagcca tcactgtttt
      781 caagaatatg tttgagaaga atgtggaaat tagtccagtc actatcatca atcttctttc
      841 tgctcatgtt agtcacgagc cactacattg tcttgttgtt aaatgtggaa tggtgaatga
      901 tatatctgtg gttacttctt tggtctgtgc atattcaagg tgtgggtgtt tggtttcagc
      961 agagcgtctt tatgcgtctg ctaaacaaga tagtattgtc ggcttaactt cgattgtttc
     1021 atgctatgcg gagaaaggag atatggatat agcagttgtg tatttttcta aaacgcgtca
     1081 gttgtgtatg aaaattgatg ctgtagcttt agttggaatt ctccatggat gtaaaaagtc
     1141 ttcccatatt gacataggaa tgtcgttaca tggttatgcg atcaaaagcg gattgtgcac
     1201 aaaaacactg gttgtgaatg gactgataac tatgtactct aagtttgatg atgtagagac
     1261 tgtcctgttt ttgtttgagc aactgcagga gactccttta attagctgga actcagtgat
     1321 atccgggtgt gtacagtctg gaagggcaag tacagctttt gaggtgttcc atcagatgat
     1381 gttaactggt ggacttttgc cggatgccat tacgatagcc agtttgcttg ctggctgttc
     1441 ccagctttgt tgcttgaatt tggggaagga gcttcatggc tatactctta ggaacaattt
     1501 tgaaaatgag aactttgttt gcactgctct gatagatatg tatgccaaat gtggaaacga
     1561 agtacaagcg gaaagtgtgt tcaagagtat aaaagctccg tgtacagcaa catggaactc
     1621 aatgatatca ggatacagct tatcggggtt acaacatcga gctctttctt gttacttgga
     1681 aatgcgagag aaggggttga aacctgacga gatcaccttt ttgggggttc tgtctgcatg
     1741 taaccatgga ggctttgtcg atgaaggaaa aatatgtttc agagcaatga tcaaagagtt
     1801 tggaatatct ccaactttac agcattatgc acttatggtt ggcttgttgg gaagagcatg
     1861 tttatttact gaggcattgt atttaatttg gaagatggat ataaagccgg attctgcagt
     1921 atggggtgct ctacttagcg cgtgcattat tcacagagag ttggaggttg gggaatatgt
     1981 agctaggaaa atgtttatgc tggattacaa gaatggaggg ctgtatgtat tgatgtcaaa
     2041 cctatatgca acagaagcaa tgtgggacga cgtagttaga gtcaggaata tgatgaaaga
     2101 taatggatac gatggttatt tgggagttag ccaaatataa
//
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Reference sequence information

  • RefSeq protein product
    See the reference protein sequence for Tetratricopeptide repeat (TPR)-like superfamily protein (NP_178563.2).

More about the AT2G04860 gene

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