LOCUS NM_126518 2140 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana Tetratricopeptide repeat (TPR)-like
superfamily protein (AT2G04860), partial mRNA.
ACCESSION NM_126518
VERSION NM_126518.3
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 2140)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 2140)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2140)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 2140)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003071).
On Sep 12, 2016 this sequence version replaced NM_126518.2.
COMPLETENESS: incomplete on the 3' end.
FEATURES Location/Qualifiers
source 1..2140
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
gene 1..>2140
/locus_tag="AT2G04860"
/gene_synonym="F28I8.8; F28I8_8"
/db_xref="Araport:AT2G04860"
/db_xref="GeneID:815032"
/db_xref="TAIR:AT2G04860"
CDS 62..2140
/locus_tag="AT2G04860"
/gene_synonym="F28I8.8; F28I8_8"
/inference="Similar to RNA sequence, EST:INSD:EG457721.1"
/inference="similar to RNA sequence,
mRNA:INSD:DQ446469.1,INSD:DQ652961.1"
/note="Tetratricopeptide repeat (TPR)-like superfamily
protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide
repeat (InterPro:IPR002885); BEST Arabidopsis thaliana
protein match is: Pentatricopeptide repeat (PPR)
superfamily protein (TAIR:AT1G18485.1); Has 40750 Blast
hits to 12883 proteins in 192 species: Archae - 0;
Bacteria - 0; Metazoa - 53; Fungi - 56; Plants - 40225;
Viruses - 0; Other Eukaryotes - 416 (source: NCBI BLink)."
/codon_start=1
/product="Tetratricopeptide repeat (TPR)-like superfamily
protein"
/protein_id="NP_178563.2"
/db_xref="Araport:AT2G04860"
/db_xref="GeneID:815032"
/db_xref="TAIR:AT2G04860"
/translation="MRITKPITLYRDLSYFHSLLKSCIHGEISSSPITIFRDLLRSSL
TPNHFTMSIFLQATTTSFNSFKLQVEQVQTHLTKSGLDRFVYVKTSLLNLYLKKGCVT
SAQMLFDEMPERDTVVWNALICGYSRNGYECDAWKLFIVMLQQGFSPSATTLVNLLPF
CGQCGFVSQGRSVHGVAAKSGLELDSQVKNALISFYSKCAELGSAEVLFREMKDKSTV
SWNTMIGAYSQSGLQEEAITVFKNMFEKNVEISPVTIINLLSAHVSHEPLHCLVVKCG
MVNDISVVTSLVCAYSRCGCLVSAERLYASAKQDSIVGLTSIVSCYAEKGDMDIAVVY
FSKTRQLCMKIDAVALVGILHGCKKSSHIDIGMSLHGYAIKSGLCTKTLVVNGLITMY
SKFDDVETVLFLFEQLQETPLISWNSVISGCVQSGRASTAFEVFHQMMLTGGLLPDAI
TIASLLAGCSQLCCLNLGKELHGYTLRNNFENENFVCTALIDMYAKCGNEVQAESVFK
SIKAPCTATWNSMISGYSLSGLQHRALSCYLEMREKGLKPDEITFLGVLSACNHGGFV
DEGKICFRAMIKEFGISPTLQHYALMVGLLGRACLFTEALYLIWKMDIKPDSAVWGAL
LSACIIHRELEVGEYVARKMFMLDYKNGGLYVLMSNLYATEAMWDDVVRVRNMMKDNG
YDGYLGVSQI"
ORIGIN
1 cacaagttct aataattccg acacaaggaa ataaagctag aggagacaga acagagatag
61 tatgcgcatt accaaaccca taactctata tagagacctt tcttacttcc attctctact
121 aaaatcttgt atccatggtg aaatctcttc ttctccaatc actatcttcc gtgacttact
181 ccgttcctct cttacaccaa atcatttcac tatgtctatc tttctccaag ccactactac
241 ctctttcaat tccttcaagt tacaagtcga acaagtccaa acccatctca caaaatcagg
301 tcttgatcgg ttcgtatacg tgaaaacatc tcttcttaat ctctacttga agaagggttg
361 cgtaacgagt gcacaaatgt tgttcgatga aatgcctgag agagatacag ttgtttggaa
421 tgcattgatt tgtgggtatt cacgaaatgg ttatgagtgt gatgcgtgga agctttttat
481 cgtaatgctt cagcaagggt tttctccatc tgctactaca cttgtgaatt tgttaccttt
541 ttgtggacaa tgtggttttg tatctcaagg gagatctgtt catggtgttg ctgcaaagtc
601 tggccttgag ttggattctc aggtgaagaa tgcgttgatt tcgttttact caaagtgtgc
661 agagttgggt tcagcagaag tcttgtttag agaaatgaaa gataaaagca cagtttcttg
721 gaatacaatg attggtgcct atagccagag tggtttacag gaagaagcca tcactgtttt
781 caagaatatg tttgagaaga atgtggaaat tagtccagtc actatcatca atcttctttc
841 tgctcatgtt agtcacgagc cactacattg tcttgttgtt aaatgtggaa tggtgaatga
901 tatatctgtg gttacttctt tggtctgtgc atattcaagg tgtgggtgtt tggtttcagc
961 agagcgtctt tatgcgtctg ctaaacaaga tagtattgtc ggcttaactt cgattgtttc
1021 atgctatgcg gagaaaggag atatggatat agcagttgtg tatttttcta aaacgcgtca
1081 gttgtgtatg aaaattgatg ctgtagcttt agttggaatt ctccatggat gtaaaaagtc
1141 ttcccatatt gacataggaa tgtcgttaca tggttatgcg atcaaaagcg gattgtgcac
1201 aaaaacactg gttgtgaatg gactgataac tatgtactct aagtttgatg atgtagagac
1261 tgtcctgttt ttgtttgagc aactgcagga gactccttta attagctgga actcagtgat
1321 atccgggtgt gtacagtctg gaagggcaag tacagctttt gaggtgttcc atcagatgat
1381 gttaactggt ggacttttgc cggatgccat tacgatagcc agtttgcttg ctggctgttc
1441 ccagctttgt tgcttgaatt tggggaagga gcttcatggc tatactctta ggaacaattt
1501 tgaaaatgag aactttgttt gcactgctct gatagatatg tatgccaaat gtggaaacga
1561 agtacaagcg gaaagtgtgt tcaagagtat aaaagctccg tgtacagcaa catggaactc
1621 aatgatatca ggatacagct tatcggggtt acaacatcga gctctttctt gttacttgga
1681 aatgcgagag aaggggttga aacctgacga gatcaccttt ttgggggttc tgtctgcatg
1741 taaccatgga ggctttgtcg atgaaggaaa aatatgtttc agagcaatga tcaaagagtt
1801 tggaatatct ccaactttac agcattatgc acttatggtt ggcttgttgg gaagagcatg
1861 tttatttact gaggcattgt atttaatttg gaagatggat ataaagccgg attctgcagt
1921 atggggtgct ctacttagcg cgtgcattat tcacagagag ttggaggttg gggaatatgt
1981 agctaggaaa atgtttatgc tggattacaa gaatggaggg ctgtatgtat tgatgtcaaa
2041 cctatatgca acagaagcaa tgtgggacga cgtagttaga gtcaggaata tgatgaaaga
2101 taatggatac gatggttatt tgggagttag ccaaatataa
//