LOCUS NM_126045 1765 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana GTP-binding protein Era-like protein
(AT5G66470), mRNA.
ACCESSION NM_126045
VERSION NM_126045.6
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1765)
AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
CONSRTM Kazusa DNA Research Institute; Cold Spring Harbor and Washington
University in St Louis Sequencing Consortium; European Union
Arabidopsis Genome Sequencing Consortium
TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 823-826 (2000)
PUBMED 11130714
REFERENCE 2 (bases 1 to 1765)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1765)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1765)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003076).
On Sep 12, 2016 this sequence version replaced NM_126045.5.
FEATURES Location/Qualifiers
source 1..1765
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="5"
/ecotype="Columbia"
gene 1..1765
/locus_tag="AT5G66470"
/gene_synonym="K1F13.13; K1F13_13"
/db_xref="Araport:AT5G66470"
/db_xref="GeneID:836779"
/db_xref="TAIR:AT5G66470"
CDS 58..1341
/locus_tag="AT5G66470"
/gene_synonym="K1F13.13; K1F13_13"
/inference="Similar to RNA sequence,
EST:INSD:BP842409.1,INSD:EH969241.1,INSD:AV817470.1,
INSD:AV782363.1,INSD:DR225800.1,INSD:ES057484.1,
INSD:EH879828.1,INSD:EL300681.1,INSD:AV441478.1,
INSD:EH855087.1,INSD:EL020035.1,INSD:BP867806.1,
INSD:AV804281.1,INSD:EL231614.1,INSD:EL332815.1,
INSD:BP777296.1,INSD:EH872789.1,INSD:EH830423.1,
INSD:EL290451.1,INSD:EL237068.1,INSD:EH924477.1,
INSD:EL266892.1,INSD:H36766.1,INSD:EL044068.1,
INSD:CB255999.1,INSD:EL294823.1,INSD:CA781538.1,
INSD:EH919454.1,INSD:EG464147.1,INSD:EL093463.1,
INSD:AV821811.1,INSD:EH795619.1,INSD:EL251900.1"
/inference="similar to RNA sequence,
mRNA:INSD:BX831401.1,INSD:AY065195.1,INSD:BX830944.1,
INSD:BX830731.1,INSD:AY093245.1"
/note="RNA binding;GTP binding; FUNCTIONS IN: RNA binding,
GTP binding; LOCATED IN: chloroplast; EXPRESSED IN: 20
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: K Homology, type 2
(InterPro:IPR004044), K Homology, prokaryotic type
(InterPro:IPR009019), Small GTP-binding protein
(InterPro:IPR005225), GTP1/OBG (InterPro:IPR006073),
GTP-binding protein Era (InterPro:IPR005662), GTP-binding
protein, HSR1-related (InterPro:IPR002917), K
homology-like, alpha/beta (InterPro:IPR015946); BEST
Arabidopsis thaliana protein match is: GTP-binding family
protein (TAIR:AT1G30960.1); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink)."
/codon_start=1
/product="GTP-binding protein Era-like protein"
/protein_id="NP_201448.2"
/db_xref="GeneID:836779"
/db_xref="TAIR:AT5G66470"
/db_xref="Araport:AT5G66470"
/translation="MAVSPHISPTLSRYKFFSTSVVENPNFSPYRIYSRRRVTKSHLQ
AHNSTTSYGRTELSSSKKLWIRQRSFSEMEVEQAQLEDDEEQVEIDIVDEASLLSLSM
KPDRNMALLDDYEMEELGHTPNTHHRSGYVAVVGMPNVGKSTLSNQMIGQKISIVTDK
PQTTRHRILGICSSPEYQMILYDTPGVIEKKMHRLDTMMMKNVRDAAINADCVVILVD
ACKTPTNIEEVLKEGLGDLEKKPPMLLVMNKKDLIKPGEIAKKLEWYEKFTDVDEVIP
VSAKYGHGIEDVKEWILSKLPFGPPYYPKDIVSEHPERFFVSEIVREKIFMQYRNEVP
YACQVNVLSYKTRPAAKDFIQVEVVVDKNSQKIILIGKEGKALKTLATAARLDIEDFL
QKKVFLEVEVKVKENWRQDEGLLKYYGYGGQIRAM"
ORIGIN
1 acctgtgagg aaaaaccaac cagtgagagc tatcaatttg aaaaaccaag tccaacaatg
61 gcggtctctc cgcatatttc gcctactctt tcccgctaca aattcttctc tacttccgtt
121 gttgaaaacc ctaatttctc tccgtatcgt atctatagtc ggcggagagt taccaaatca
181 catctccagg cgcacaacag taccactagc tatggccgga cggaactctc ctcctcgaag
241 aagctatgga ttaggcaacg aagcttcagc gaaatggagg ttgagcaagc acaattagaa
301 gatgatgaag aacaagtgga gatcgatatc gtcgacgaag ccagtcttct ctccctgagc
361 atgaaaccgg acagaaacat ggcgttgctc gacgattatg agatggagga gcttggacac
421 acgcctaata ctcatcatcg gagcggatat gtggcggtgg tggggatgcc caacgtcggg
481 aaaagcacgc tttcgaatca aatgattggt cagaaaatat cgattgttac agataaacct
541 caaacgacga ggcatcggat tcttggtatt tgttctagcc ctgaatatca gatgatactt
601 tatgatacgc ctggtgtaat tgagaagaag atgcacaggt tagatacaat gatgatgaag
661 aatgtcagag atgctgccat caatgcggac tgcgtagtaa ttcttgttga tgcttgtaaa
721 acgcctacta atatagaaga agttttgaaa gagggtttgg gagaccttga gaaaaagcca
781 cccatgttgc ttgttatgaa taagaaagat ctgatcaaac ctggtgagat tgccaagaaa
841 ctggagtggt atgaaaaatt tacggatgtt gatgaagtta tacctgtaag tgcaaagtat
901 ggacatggaa tagaggatgt caaagagtgg atattatcca aacttccctt cgggccacct
961 tattatccaa aggatattgt gagcgagcat ccagagagat tttttgtttc tgagattgtt
1021 agagagaaaa tatttatgca gtaccgaaat gaagttcctt atgcatgtca ggtgaacgtg
1081 ctgagctaca aaactagacc agctgcaaaa gattttattc aagtggaagt agtagtggat
1141 aaaaattctc agaagatcat ccttatagga aaagaaggaa aggctctgaa aacactagca
1201 acggctgctc ggctcgacat tgaagatttc cttcagaaga aagtcttcct cgaggtggaa
1261 gtgaaagtga aagagaactg gagacaagac gaggggcttc tcaagtacta cggctatgga
1321 ggacagatcc gagctatgta gtatgtgggc ttcaaatggg ccttgaagaa gatgagaaag
1381 tgcaaatgac tcggcggctc aggttagctt tttcccttct ttttttttgt atttagccga
1441 tgccactcag tctagctttt gtttttaatc tcaatcagtt gattcctttg gaaatttgaa
1501 ctctttcttc ttttgttttg tccttaagag tttgttcaac caaccccact gaatatctca
1561 ttccatgatc acaggtagta gacttataat taaacaattg catttaaatt tgctttaaaa
1621 gaaatgaaaa aggtgaagcg taatttatgg cgggggataa gtagagtgaa ttgctgtgtg
1681 tgtttggttg ggtcgagtgg agtcggtgga agttaagatc cacttattgc gcctatgctt
1741 cttctgttga tagaaaaaaa gtgtc
//