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Arabidopsis thaliana GTP-binding protein Era-like protein (AT5G66470), mRNA

NCBI Reference Sequence: NM_126045.6

FASTA Graphics 

LOCUS       NM_126045               1765 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana GTP-binding protein Era-like protein
            (AT5G66470), mRNA.
ACCESSION   NM_126045
VERSION     NM_126045.6
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1765)
  AUTHORS   Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
            Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
            Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
            Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
            Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
            Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
            Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
            Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
            Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
            Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
            Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
            See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
            Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
            Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
            Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
            Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
            Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
            Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
            Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
            Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
            Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
            Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
            Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
  CONSRTM   Kazusa DNA Research Institute; Cold Spring Harbor and Washington
            University in St Louis Sequencing Consortium; European Union
            Arabidopsis Genome Sequencing Consortium
  TITLE     Sequence and analysis of chromosome 5 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 823-826 (2000)
   PUBMED   11130714
REFERENCE   2  (bases 1 to 1765)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1765)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1765)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003076).
            
            On Sep 12, 2016 this sequence version replaced NM_126045.5.
FEATURES             Location/Qualifiers
     source          1..1765
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="5"
                     /ecotype="Columbia"
     gene            1..1765
                     /locus_tag="AT5G66470"
                     /gene_synonym="K1F13.13; K1F13_13"
                     /db_xref="Araport:AT5G66470"
                     /db_xref="GeneID:836779"
                     /db_xref="TAIR:AT5G66470"
     CDS             58..1341
                     /locus_tag="AT5G66470"
                     /gene_synonym="K1F13.13; K1F13_13"
                     /inference="Similar to RNA sequence,
                     EST:INSD:BP842409.1,INSD:EH969241.1,INSD:AV817470.1,
                     INSD:AV782363.1,INSD:DR225800.1,INSD:ES057484.1,
                     INSD:EH879828.1,INSD:EL300681.1,INSD:AV441478.1,
                     INSD:EH855087.1,INSD:EL020035.1,INSD:BP867806.1,
                     INSD:AV804281.1,INSD:EL231614.1,INSD:EL332815.1,
                     INSD:BP777296.1,INSD:EH872789.1,INSD:EH830423.1,
                     INSD:EL290451.1,INSD:EL237068.1,INSD:EH924477.1,
                     INSD:EL266892.1,INSD:H36766.1,INSD:EL044068.1,
                     INSD:CB255999.1,INSD:EL294823.1,INSD:CA781538.1,
                     INSD:EH919454.1,INSD:EG464147.1,INSD:EL093463.1,
                     INSD:AV821811.1,INSD:EH795619.1,INSD:EL251900.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:BX831401.1,INSD:AY065195.1,INSD:BX830944.1,
                     INSD:BX830731.1,INSD:AY093245.1"
                     /note="RNA binding;GTP binding; FUNCTIONS IN: RNA binding,
                     GTP binding; LOCATED IN: chloroplast; EXPRESSED IN: 20
                     plant structures; EXPRESSED DURING: 13 growth stages;
                     CONTAINS InterPro DOMAIN/s: K Homology, type 2
                     (InterPro:IPR004044), K Homology, prokaryotic type
                     (InterPro:IPR009019), Small GTP-binding protein
                     (InterPro:IPR005225), GTP1/OBG (InterPro:IPR006073),
                     GTP-binding protein Era (InterPro:IPR005662), GTP-binding
                     protein, HSR1-related (InterPro:IPR002917), K
                     homology-like, alpha/beta (InterPro:IPR015946); BEST
                     Arabidopsis thaliana protein match is: GTP-binding family
                     protein (TAIR:AT1G30960.1); Has 30201 Blast hits to 17322
                     proteins in 780 species: Archae - 12; Bacteria - 1396;
                     Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
                     Other Eukaryotes - 2996 (source: NCBI BLink)."
                     /codon_start=1
                     /product="GTP-binding protein Era-like protein"
                     /protein_id="NP_201448.2"
                     /db_xref="GeneID:836779"
                     /db_xref="TAIR:AT5G66470"
                     /db_xref="Araport:AT5G66470"
                     /translation="MAVSPHISPTLSRYKFFSTSVVENPNFSPYRIYSRRRVTKSHLQ
                     AHNSTTSYGRTELSSSKKLWIRQRSFSEMEVEQAQLEDDEEQVEIDIVDEASLLSLSM
                     KPDRNMALLDDYEMEELGHTPNTHHRSGYVAVVGMPNVGKSTLSNQMIGQKISIVTDK
                     PQTTRHRILGICSSPEYQMILYDTPGVIEKKMHRLDTMMMKNVRDAAINADCVVILVD
                     ACKTPTNIEEVLKEGLGDLEKKPPMLLVMNKKDLIKPGEIAKKLEWYEKFTDVDEVIP
                     VSAKYGHGIEDVKEWILSKLPFGPPYYPKDIVSEHPERFFVSEIVREKIFMQYRNEVP
                     YACQVNVLSYKTRPAAKDFIQVEVVVDKNSQKIILIGKEGKALKTLATAARLDIEDFL
                     QKKVFLEVEVKVKENWRQDEGLLKYYGYGGQIRAM"
ORIGIN      
        1 acctgtgagg aaaaaccaac cagtgagagc tatcaatttg aaaaaccaag tccaacaatg
       61 gcggtctctc cgcatatttc gcctactctt tcccgctaca aattcttctc tacttccgtt
      121 gttgaaaacc ctaatttctc tccgtatcgt atctatagtc ggcggagagt taccaaatca
      181 catctccagg cgcacaacag taccactagc tatggccgga cggaactctc ctcctcgaag
      241 aagctatgga ttaggcaacg aagcttcagc gaaatggagg ttgagcaagc acaattagaa
      301 gatgatgaag aacaagtgga gatcgatatc gtcgacgaag ccagtcttct ctccctgagc
      361 atgaaaccgg acagaaacat ggcgttgctc gacgattatg agatggagga gcttggacac
      421 acgcctaata ctcatcatcg gagcggatat gtggcggtgg tggggatgcc caacgtcggg
      481 aaaagcacgc tttcgaatca aatgattggt cagaaaatat cgattgttac agataaacct
      541 caaacgacga ggcatcggat tcttggtatt tgttctagcc ctgaatatca gatgatactt
      601 tatgatacgc ctggtgtaat tgagaagaag atgcacaggt tagatacaat gatgatgaag
      661 aatgtcagag atgctgccat caatgcggac tgcgtagtaa ttcttgttga tgcttgtaaa
      721 acgcctacta atatagaaga agttttgaaa gagggtttgg gagaccttga gaaaaagcca
      781 cccatgttgc ttgttatgaa taagaaagat ctgatcaaac ctggtgagat tgccaagaaa
      841 ctggagtggt atgaaaaatt tacggatgtt gatgaagtta tacctgtaag tgcaaagtat
      901 ggacatggaa tagaggatgt caaagagtgg atattatcca aacttccctt cgggccacct
      961 tattatccaa aggatattgt gagcgagcat ccagagagat tttttgtttc tgagattgtt
     1021 agagagaaaa tatttatgca gtaccgaaat gaagttcctt atgcatgtca ggtgaacgtg
     1081 ctgagctaca aaactagacc agctgcaaaa gattttattc aagtggaagt agtagtggat
     1141 aaaaattctc agaagatcat ccttatagga aaagaaggaa aggctctgaa aacactagca
     1201 acggctgctc ggctcgacat tgaagatttc cttcagaaga aagtcttcct cgaggtggaa
     1261 gtgaaagtga aagagaactg gagacaagac gaggggcttc tcaagtacta cggctatgga
     1321 ggacagatcc gagctatgta gtatgtgggc ttcaaatggg ccttgaagaa gatgagaaag
     1381 tgcaaatgac tcggcggctc aggttagctt tttcccttct ttttttttgt atttagccga
     1441 tgccactcag tctagctttt gtttttaatc tcaatcagtt gattcctttg gaaatttgaa
     1501 ctctttcttc ttttgttttg tccttaagag tttgttcaac caaccccact gaatatctca
     1561 ttccatgatc acaggtagta gacttataat taaacaattg catttaaatt tgctttaaaa
     1621 gaaatgaaaa aggtgaagcg taatttatgg cgggggataa gtagagtgaa ttgctgtgtg
     1681 tgtttggttg ggtcgagtgg agtcggtgga agttaagatc cacttattgc gcctatgctt
     1741 cttctgttga tagaaaaaaa gtgtc
//
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