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Arabidopsis thaliana rotamase CYP 7 (ROC7), mRNA

NCBI Reference Sequence: NM_125258.5

FASTA Graphics 

LOCUS       NM_125258                963 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana rotamase CYP 7 (ROC7), mRNA.
ACCESSION   NM_125258
VERSION     NM_125258.5
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 963)
  AUTHORS   Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
            Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
            Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
            Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
            Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
            Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
            Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
            Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
            Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
            Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
            Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
            See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
            Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
            Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
            Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
            Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
            Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
            Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
            Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
            Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
            Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
            Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
            Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
  CONSRTM   Kazusa DNA Research Institute; Cold Spring Harbor and Washington
            University in St Louis Sequencing Consortium; European Union
            Arabidopsis Genome Sequencing Consortium
  TITLE     Sequence and analysis of chromosome 5 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 823-826 (2000)
   PUBMED   11130714
REFERENCE   2  (bases 1 to 963)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 963)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 963)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003076).
            
            On Sep 12, 2016 this sequence version replaced NM_125258.4.
FEATURES             Location/Qualifiers
     source          1..963
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="5"
                     /ecotype="Columbia"
     gene            1..963
                     /gene="ROC7"
                     /locus_tag="AT5G58710"
                     /gene_synonym="CYCLOPHILIN; MZN1.23; MZN1_23; rotamase CYP
                     7"
                     /note="Encodes cyclophilin ROC7."
                     /db_xref="Araport:AT5G58710"
                     /db_xref="GeneID:835985"
                     /db_xref="TAIR:AT5G58710"
     CDS             66..680
                     /gene="ROC7"
                     /locus_tag="AT5G58710"
                     /gene_synonym="CYCLOPHILIN; MZN1.23; MZN1_23; rotamase CYP
                     7"
                     /inference="Similar to RNA sequence,
                     EST:INSD:AI999554.1,INSD:EH878904.1,INSD:BP844196.1,
                     INSD:ES052035.1,INSD:DR209966.1,INSD:ES156352.1,
                     INSD:ES202094.1,INSD:AV555072.1,INSD:ES208568.1,
                     INSD:BP595684.1,INSD:ES070037.1,INSD:BP648303.1,
                     INSD:EL070436.1,INSD:DR209959.1,INSD:DR209935.1,
                     INSD:DR209939.1,INSD:DR373934.1,INSD:ES104520.1,
                     INSD:EH926744.1,INSD:EL973808.1,INSD:EH972919.1,
                     INSD:EL126279.1,INSD:DR209951.1,INSD:BP611850.1,
                     INSD:ES059017.1,INSD:EL257940.1,INSD:ES048901.1,
                     INSD:EL213855.1,INSD:EH870919.1,INSD:EL223735.1,
                     INSD:BP578692.1,INSD:DR209936.1,INSD:EH832573.1,
                     INSD:DR209955.1,INSD:AV823149.1,INSD:BP626993.1,
                     INSD:AI100191.1,INSD:EL998272.1,INSD:BP842721.1,
                     INSD:DR209945.1,INSD:EL982854.1,INSD:ES155027.1,
                     INSD:ES159835.1,INSD:ES091380.1,INSD:BP663674.1,
                     INSD:BP610856.1,INSD:EH850920.1,INSD:BP589308.1,
                     INSD:BP636022.1,INSD:ES085200.1,INSD:ES086272.1,
                     INSD:ES056556.1,INSD:ES067850.1,INSD:EH962564.1,
                     INSD:EH952666.1,INSD:ES067630.1,INSD:BP833642.1,
                     INSD:EL275616.1,INSD:EL152620.1,INSD:ES125507.1,
                     INSD:BP593802.1,INSD:EL172012.1,INSD:ES122027.1,
                     INSD:EL967292.1,INSD:EH832873.1,INSD:BP579237.1,
                     INSD:EH831228.1,INSD:EH948124.1,INSD:ES093231.1,
                     INSD:EL993958.1,INSD:EL971084.1,INSD:ES113585.1,
                     INSD:DR209941.1,INSD:ES033453.1,INSD:ES002980.1,
                     INSD:EL193758.1,INSD:ES039936.1,INSD:BP610082.1,
                     INSD:ES125714.1,INSD:BP584071.1,INSD:AV784071.1,
                     INSD:EL979470.1,INSD:ES141725.1,INSD:ES182912.1,
                     INSD:DR209934.1,INSD:EL970437.1,INSD:BP853850.1,
                     INSD:ES141315.1,INSD:ES011925.1,INSD:ES085272.1,
                     INSD:EH832529.1,INSD:EH886306.1,INSD:DR209937.1,
                     INSD:EL264202.1,INSD:DR209952.1,INSD:EL165019.1,
                     INSD:ES029916.1,INSD:EL079317.1,INSD:ES030600.1,
                     INSD:BP643362.1,INSD:BP618898.1,INSD:EL327758.1,
                     INSD:ES001833.1,INSD:EL031060.1,INSD:CB262355.1,
                     INSD:ES199745.1,INSD:ES050225.1,INSD:AV808867.1,
                     INSD:EH828650.1,INSD:DR380949.1,INSD:DR209964.1,
                     INSD:EG490414.1,INSD:ES108870.1,INSD:ES168793.1,
                     INSD:DR209954.1,INSD:ES093349.1,INSD:ES007423.1,
                     INSD:ES002139.1,INSD:BP800651.1,INSD:CF773940.1,
                     INSD:DR209931.1,INSD:EL139178.1,INSD:BP858420.1,
                     INSD:ES080857.1,INSD:ES065390.1,INSD:DR209932.1,
                     INSD:EG510877.1,INSD:AA712185.1,INSD:EH801087.1,
                     INSD:BP634214.1,INSD:ES011239.1,INSD:BP852568.1,
                     INSD:BP667663.1,INSD:ES099111.1,INSD:BP853163.1,
                     INSD:EG459605.1,INSD:DR209933.1,INSD:DR209943.1,
                     INSD:ES215922.1,INSD:EL193108.1,INSD:EL273968.1,
                     INSD:EG459607.1,INSD:BP633407.1,INSD:DR209940.1,
                     INSD:ES021544.1,INSD:BP593875.1,INSD:BP795568.1,
                     INSD:EG459606.1,INSD:AV807544.1,INSD:EL989927.1,
                     INSD:EL246436.1,INSD:AV559336.1,INSD:BP861230.1,
                     INSD:ES085592.1,INSD:EL050212.1,INSD:AV543936.1,
                     INSD:EL968923.1,INSD:EL973469.1,INSD:DR209956.1,
                     INSD:EG459604.1,INSD:EL059127.1,INSD:BP634750.1,
                     INSD:EL262602.1,INSD:DR209938.1,INSD:ES197494.1,
                     INSD:EG490415.1,INSD:DR209962.1,INSD:ES077176.1,
                     INSD:DR209958.1,INSD:EH966882.1,INSD:ES111321.1,
                     INSD:ES122692.1,INSD:ES069578.1,INSD:EL022483.1,
                     INSD:ES200891.1,INSD:ES129762.1,INSD:DR209963.1,
                     INSD:ES115780.1,INSD:EH973556.1,INSD:BP781389.1,
                     INSD:BP822229.1,INSD:ES197241.1,INSD:EL320535.1,
                     INSD:ES055275.1,INSD:EH992256.1,INSD:EL197424.1,
                     INSD:DR209946.1,INSD:EL208416.1,INSD:EL269881.1,
                     INSD:EH861021.1,INSD:EL277494.1,INSD:BP640688.1,
                     INSD:EH863308.1,INSD:ES094975.1,INSD:DR209942.1,
                     INSD:EL232103.1,INSD:ES088117.1,INSD:EL072370.1,
                     INSD:CB260550.1,INSD:DR209950.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:AY048227.1,INSD:AY086471.1,INSD:BX830463.1,
                     INSD:AY094017.1,INSD:AF192490.1,INSD:BX832221.1"
                     /note="rotamase CYP 7 (ROC7); FUNCTIONS IN:
                     peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN:
                     protein folding, root development; LOCATED IN:
                     chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
                     DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
                     Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl
                     cis-trans isomerase, cyclophilin-type
                     (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase,
                     cyclophilin-type, conserved site (InterPro:IPR020892);
                     BEST Arabidopsis thaliana protein match is: cyclophilin 5
                     (TAIR:AT2G29960.1); Has 1807 Blast hits to 1807 proteins
                     in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
                     Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
                     339 (source: NCBI BLink)."
                     /codon_start=1
                     /product="rotamase CYP 7"
                     /protein_id="NP_200679.1"
                     /db_xref="GeneID:835985"
                     /db_xref="TAIR:AT5G58710"
                     /db_xref="Araport:AT5G58710"
                     /translation="MASSVTLLLWSLLLLGTLSAIQAKKSKENLKEITHKVYFDVEID
                     GKAAGRIVMGLFGKTVPKTVENFRALCTGEKGIGKNGKALHYKGSSFHRIIPSFMLQG
                     GDFTHGNGMGGESIYGEKFADENFKLKHTGPGFLSMANAGQDTNGSQFFITTVTTSWL
                     DGRHVVFGKVVTGMDVVYKVEAEGNQSGTPKSKVVIVDSGELPL"
ORIGIN      
        1 aaatagcggt ggacaaggga aaaaaaaagg gactgtggag aaacacttta gcacggtgcg
       61 acaagatggc gagctcagtg acgctgcttc tatggagtct tcttcttctc ggtacactaa
      121 gcgctattca ggccaaaaag tctaaggaaa acttaaagga gatcacacac aaggtttatt
      181 ttgatgttga aattgatggg aaagcagctg gtcgtattgt catgggtcta tttggcaaga
      241 cagtccccaa aactgtagag aatttccgag ctttatgcac tggggagaaa ggaataggta
      301 agaatgggaa ggcgctccat tacaagggga gttcatttca taggatcata ccaagcttta
      361 tgctccaagg aggcgatttt acacatggaa atggaatggg aggagaatct atctatggtg
      421 agaagtttgc tgatgagaac ttcaaactca agcatactgg tccagggttc ttatcaatgg
      481 caaatgccgg tcaagatacc aacggatcac agtttttcat cacaactgta acaaccagct
      541 ggttggatgg gcgacatgtg gtattcggga aggtagtgac aggaatggat gtggtgtaca
      601 aagtcgaagc tgaaggaaat cagagtggaa ctcctaagag taaagtggtg attgtagaca
      661 gtggtgagct tcccctgtaa ctcaacaact ctagttttct ccatctgatc atccattgat
      721 gtgagctcta gtgtgcttga tgacttttgt gttaaaacga gtgtcttggt tactttatga
      781 aagattctac cggctttatt tctttcgtct gctttctagc tcgagctatg tctgacttta
      841 tacacaaatg tctttcagta gcaaaaattc tgcacttatg ccgttttgca ttgtcaacat
      901 ttgtagaatt tatagaagtt acacgataat atatatatca gtaaactcct aaagaagagt
      961 tag
//
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