LOCUS NM_125258 963 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana rotamase CYP 7 (ROC7), mRNA.
ACCESSION NM_125258
VERSION NM_125258.5
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 963)
AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
CONSRTM Kazusa DNA Research Institute; Cold Spring Harbor and Washington
University in St Louis Sequencing Consortium; European Union
Arabidopsis Genome Sequencing Consortium
TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 823-826 (2000)
PUBMED 11130714
REFERENCE 2 (bases 1 to 963)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 963)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 963)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003076).
On Sep 12, 2016 this sequence version replaced NM_125258.4.
FEATURES Location/Qualifiers
source 1..963
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="5"
/ecotype="Columbia"
gene 1..963
/gene="ROC7"
/locus_tag="AT5G58710"
/gene_synonym="CYCLOPHILIN; MZN1.23; MZN1_23; rotamase CYP
7"
/note="Encodes cyclophilin ROC7."
/db_xref="Araport:AT5G58710"
/db_xref="GeneID:835985"
/db_xref="TAIR:AT5G58710"
CDS 66..680
/gene="ROC7"
/locus_tag="AT5G58710"
/gene_synonym="CYCLOPHILIN; MZN1.23; MZN1_23; rotamase CYP
7"
/inference="Similar to RNA sequence,
EST:INSD:AI999554.1,INSD:EH878904.1,INSD:BP844196.1,
INSD:ES052035.1,INSD:DR209966.1,INSD:ES156352.1,
INSD:ES202094.1,INSD:AV555072.1,INSD:ES208568.1,
INSD:BP595684.1,INSD:ES070037.1,INSD:BP648303.1,
INSD:EL070436.1,INSD:DR209959.1,INSD:DR209935.1,
INSD:DR209939.1,INSD:DR373934.1,INSD:ES104520.1,
INSD:EH926744.1,INSD:EL973808.1,INSD:EH972919.1,
INSD:EL126279.1,INSD:DR209951.1,INSD:BP611850.1,
INSD:ES059017.1,INSD:EL257940.1,INSD:ES048901.1,
INSD:EL213855.1,INSD:EH870919.1,INSD:EL223735.1,
INSD:BP578692.1,INSD:DR209936.1,INSD:EH832573.1,
INSD:DR209955.1,INSD:AV823149.1,INSD:BP626993.1,
INSD:AI100191.1,INSD:EL998272.1,INSD:BP842721.1,
INSD:DR209945.1,INSD:EL982854.1,INSD:ES155027.1,
INSD:ES159835.1,INSD:ES091380.1,INSD:BP663674.1,
INSD:BP610856.1,INSD:EH850920.1,INSD:BP589308.1,
INSD:BP636022.1,INSD:ES085200.1,INSD:ES086272.1,
INSD:ES056556.1,INSD:ES067850.1,INSD:EH962564.1,
INSD:EH952666.1,INSD:ES067630.1,INSD:BP833642.1,
INSD:EL275616.1,INSD:EL152620.1,INSD:ES125507.1,
INSD:BP593802.1,INSD:EL172012.1,INSD:ES122027.1,
INSD:EL967292.1,INSD:EH832873.1,INSD:BP579237.1,
INSD:EH831228.1,INSD:EH948124.1,INSD:ES093231.1,
INSD:EL993958.1,INSD:EL971084.1,INSD:ES113585.1,
INSD:DR209941.1,INSD:ES033453.1,INSD:ES002980.1,
INSD:EL193758.1,INSD:ES039936.1,INSD:BP610082.1,
INSD:ES125714.1,INSD:BP584071.1,INSD:AV784071.1,
INSD:EL979470.1,INSD:ES141725.1,INSD:ES182912.1,
INSD:DR209934.1,INSD:EL970437.1,INSD:BP853850.1,
INSD:ES141315.1,INSD:ES011925.1,INSD:ES085272.1,
INSD:EH832529.1,INSD:EH886306.1,INSD:DR209937.1,
INSD:EL264202.1,INSD:DR209952.1,INSD:EL165019.1,
INSD:ES029916.1,INSD:EL079317.1,INSD:ES030600.1,
INSD:BP643362.1,INSD:BP618898.1,INSD:EL327758.1,
INSD:ES001833.1,INSD:EL031060.1,INSD:CB262355.1,
INSD:ES199745.1,INSD:ES050225.1,INSD:AV808867.1,
INSD:EH828650.1,INSD:DR380949.1,INSD:DR209964.1,
INSD:EG490414.1,INSD:ES108870.1,INSD:ES168793.1,
INSD:DR209954.1,INSD:ES093349.1,INSD:ES007423.1,
INSD:ES002139.1,INSD:BP800651.1,INSD:CF773940.1,
INSD:DR209931.1,INSD:EL139178.1,INSD:BP858420.1,
INSD:ES080857.1,INSD:ES065390.1,INSD:DR209932.1,
INSD:EG510877.1,INSD:AA712185.1,INSD:EH801087.1,
INSD:BP634214.1,INSD:ES011239.1,INSD:BP852568.1,
INSD:BP667663.1,INSD:ES099111.1,INSD:BP853163.1,
INSD:EG459605.1,INSD:DR209933.1,INSD:DR209943.1,
INSD:ES215922.1,INSD:EL193108.1,INSD:EL273968.1,
INSD:EG459607.1,INSD:BP633407.1,INSD:DR209940.1,
INSD:ES021544.1,INSD:BP593875.1,INSD:BP795568.1,
INSD:EG459606.1,INSD:AV807544.1,INSD:EL989927.1,
INSD:EL246436.1,INSD:AV559336.1,INSD:BP861230.1,
INSD:ES085592.1,INSD:EL050212.1,INSD:AV543936.1,
INSD:EL968923.1,INSD:EL973469.1,INSD:DR209956.1,
INSD:EG459604.1,INSD:EL059127.1,INSD:BP634750.1,
INSD:EL262602.1,INSD:DR209938.1,INSD:ES197494.1,
INSD:EG490415.1,INSD:DR209962.1,INSD:ES077176.1,
INSD:DR209958.1,INSD:EH966882.1,INSD:ES111321.1,
INSD:ES122692.1,INSD:ES069578.1,INSD:EL022483.1,
INSD:ES200891.1,INSD:ES129762.1,INSD:DR209963.1,
INSD:ES115780.1,INSD:EH973556.1,INSD:BP781389.1,
INSD:BP822229.1,INSD:ES197241.1,INSD:EL320535.1,
INSD:ES055275.1,INSD:EH992256.1,INSD:EL197424.1,
INSD:DR209946.1,INSD:EL208416.1,INSD:EL269881.1,
INSD:EH861021.1,INSD:EL277494.1,INSD:BP640688.1,
INSD:EH863308.1,INSD:ES094975.1,INSD:DR209942.1,
INSD:EL232103.1,INSD:ES088117.1,INSD:EL072370.1,
INSD:CB260550.1,INSD:DR209950.1"
/inference="similar to RNA sequence,
mRNA:INSD:AY048227.1,INSD:AY086471.1,INSD:BX830463.1,
INSD:AY094017.1,INSD:AF192490.1,INSD:BX832221.1"
/note="rotamase CYP 7 (ROC7); FUNCTIONS IN:
peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN:
protein folding, root development; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl
cis-trans isomerase, cyclophilin-type
(InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase,
cyclophilin-type, conserved site (InterPro:IPR020892);
BEST Arabidopsis thaliana protein match is: cyclophilin 5
(TAIR:AT2G29960.1); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink)."
/codon_start=1
/product="rotamase CYP 7"
/protein_id="NP_200679.1"
/db_xref="GeneID:835985"
/db_xref="TAIR:AT5G58710"
/db_xref="Araport:AT5G58710"
/translation="MASSVTLLLWSLLLLGTLSAIQAKKSKENLKEITHKVYFDVEID
GKAAGRIVMGLFGKTVPKTVENFRALCTGEKGIGKNGKALHYKGSSFHRIIPSFMLQG
GDFTHGNGMGGESIYGEKFADENFKLKHTGPGFLSMANAGQDTNGSQFFITTVTTSWL
DGRHVVFGKVVTGMDVVYKVEAEGNQSGTPKSKVVIVDSGELPL"
ORIGIN
1 aaatagcggt ggacaaggga aaaaaaaagg gactgtggag aaacacttta gcacggtgcg
61 acaagatggc gagctcagtg acgctgcttc tatggagtct tcttcttctc ggtacactaa
121 gcgctattca ggccaaaaag tctaaggaaa acttaaagga gatcacacac aaggtttatt
181 ttgatgttga aattgatggg aaagcagctg gtcgtattgt catgggtcta tttggcaaga
241 cagtccccaa aactgtagag aatttccgag ctttatgcac tggggagaaa ggaataggta
301 agaatgggaa ggcgctccat tacaagggga gttcatttca taggatcata ccaagcttta
361 tgctccaagg aggcgatttt acacatggaa atggaatggg aggagaatct atctatggtg
421 agaagtttgc tgatgagaac ttcaaactca agcatactgg tccagggttc ttatcaatgg
481 caaatgccgg tcaagatacc aacggatcac agtttttcat cacaactgta acaaccagct
541 ggttggatgg gcgacatgtg gtattcggga aggtagtgac aggaatggat gtggtgtaca
601 aagtcgaagc tgaaggaaat cagagtggaa ctcctaagag taaagtggtg attgtagaca
661 gtggtgagct tcccctgtaa ctcaacaact ctagttttct ccatctgatc atccattgat
721 gtgagctcta gtgtgcttga tgacttttgt gttaaaacga gtgtcttggt tactttatga
781 aagattctac cggctttatt tctttcgtct gctttctagc tcgagctatg tctgacttta
841 tacacaaatg tctttcagta gcaaaaattc tgcacttatg ccgttttgca ttgtcaacat
901 ttgtagaatt tatagaagtt acacgataat atatatatca gtaaactcct aaagaagagt
961 tag
//