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Arabidopsis thaliana basic leucine-zipper 1 (bZIP1), mRNA

NCBI Reference Sequence: NM_124322.3

FASTA Graphics 

LOCUS       NM_124322                907 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana basic leucine-zipper 1 (bZIP1), mRNA.
ACCESSION   NM_124322
VERSION     NM_124322.3
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 907)
  AUTHORS   Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
            Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
            Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
            Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
            Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
            Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
            Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
            Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
            Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
            Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
            Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
            See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
            Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
            Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
            Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
            Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
            Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
            Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
            Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
            Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
            Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
            Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
            Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
  CONSRTM   Kazusa DNA Research Institute; Cold Spring Harbor and Washington
            University in St Louis Sequencing Consortium; European Union
            Arabidopsis Genome Sequencing Consortium
  TITLE     Sequence and analysis of chromosome 5 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 823-826 (2000)
   PUBMED   11130714
REFERENCE   2  (bases 1 to 907)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 907)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 907)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003076).
            
            On Feb 17, 2004 this sequence version replaced NM_124322.2.
FEATURES             Location/Qualifiers
     source          1..907
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="5"
                     /ecotype="Columbia"
     gene            1..907
                     /gene="bZIP1"
                     /locus_tag="AT5G49450"
                     /gene_synonym="AtbZIP1; basic leucine-zipper 1; K7J8.13;
                     K7J8_13"
                     /note="Encodes a transcription activator is a positive
                     regulator of plant tolerance to salt, osmotic and drought
                     stresses."
                     /db_xref="Araport:AT5G49450"
                     /db_xref="GeneID:835005"
                     /db_xref="TAIR:AT5G49450"
     CDS             317..754
                     /gene="bZIP1"
                     /locus_tag="AT5G49450"
                     /gene_synonym="AtbZIP1; basic leucine-zipper 1; K7J8.13;
                     K7J8_13"
                     /inference="Similar to RNA sequence,
                     EST:INSD:DN604483.1,INSD:EL049327.1,INSD:EL115749.1,
                     INSD:AV832288.1,INSD:EL186530.1,INSD:EL020935.1,
                     INSD:EH989178.1,INSD:EL318231.1,INSD:EL084108.1,
                     INSD:EL240779.1,INSD:EL174494.1,INSD:EL328888.1,
                     INSD:EL305146.1,INSD:DR205667.1,INSD:EH987916.1,
                     INSD:BP610253.1,INSD:DR751246.1,INSD:EH847601.1,
                     INSD:EL066259.1,INSD:DR751385.1,INSD:BP614083.1,
                     INSD:EL224487.1,INSD:DR751384.1,INSD:EL207952.1,
                     INSD:EL154580.1,INSD:EG487027.1,INSD:EL184271.1,
                     INSD:EL291272.1,INSD:EL087024.1,INSD:EL149983.1,
                     INSD:EL066070.1,INSD:EL144668.1,INSD:BP831528.1,
                     INSD:BP853544.1,INSD:AV790498.1,INSD:ES097324.1,
                     INSD:BP600288.1,INSD:EL022254.1,INSD:EH809716.1,
                     INSD:EH829002.1,INSD:EL265599.1,INSD:BP598445.1,
                     INSD:EH865355.1,INSD:DR378132.1,INSD:EL140065.1,
                     INSD:EL102201.1,INSD:EH855916.1,INSD:BP621346.1,
                     INSD:EH847333.1,INSD:EH986534.1,INSD:EL012095.1,
                     INSD:BP582857.1,INSD:EH923257.1,INSD:EL030880.1,
                     INSD:DR362698.1,INSD:EL054794.1,INSD:EL084393.1,
                     INSD:EL014221.1,INSD:CD531379.1,INSD:ES134087.1,
                     INSD:DR205669.1,INSD:BP603440.1,INSD:EH820810.1,
                     INSD:EL140307.1,INSD:DR751533.1,INSD:DR205668.1,
                     INSD:DR751534.1,INSD:EH956125.1,INSD:EL163111.1,
                     INSD:BP576894.1,INSD:EL105803.1,INSD:EL216497.1,
                     INSD:EL063595.1,INSD:EL149018.1,INSD:DR205666.1,
                     INSD:BP591884.1,INSD:BP615884.1,INSD:EH889790.1,
                     INSD:EL048085.1,INSD:AV813172.1,INSD:EH808167.1,
                     INSD:BP654555.1,INSD:BP619261.1,INSD:EH809582.1,
                     INSD:DR750586.1,INSD:AV820421.1,INSD:EH923393.1,
                     INSD:EH995051.1,INSD:EH992321.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:BX833418.1,INSD:BT000400.1,INSD:AY136307.1,
                     INSD:AF400618.1,INSD:AY088207.1"
                     /note="basic leucine-zipper 1 (bZIP1); FUNCTIONS IN: DNA
                     binding, protein heterodimerization activity,
                     sequence-specific DNA binding transcription factor
                     activity; INVOLVED IN: anther dehiscence, regulation of
                     transcription, DNA-dependent; LOCATED IN: nucleus,
                     chloroplast; EXPRESSED IN: male gametophyte, anther,
                     pollen tube; EXPRESSED DURING: L mature pollen stage, M
                     germinated pollen stage; CONTAINS InterPro DOMAIN/s:
                     Basic-leucine zipper (bZIP) transcription factor
                     (InterPro:IPR004827), Basic leucine zipper
                     (InterPro:IPR011700); BEST Arabidopsis thaliana protein
                     match is: G-box binding factor 6 (TAIR:AT4G34590.1); Has
                     1807 Blast hits to 1807 proteins in 277 species: Archae -
                     0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
                     Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink)."
                     /codon_start=1
                     /product="basic leucine-zipper 1"
                     /protein_id="NP_199756.1"
                     /db_xref="GeneID:835005"
                     /db_xref="TAIR:AT5G49450"
                     /db_xref="Araport:AT5G49450"
                     /translation="MANAEKTSSGSDIDEKKRKRKLSNRESARRSRLKKQKLMEDTIH
                     EISSLERRIKENSERCRAVKQRLDSVETENAGLRSEKIWLSSYVSDLENMIATTSLTL
                     TQSGGGDCVDDQNANAGIAVGDCRRTPWKLSCGSLQPMASFKT"
ORIGIN      
        1 ttctcccact ttccttattt tcgatcttat ccttatcttc ttccttgttc tatttctctt
       61 ctaactaatc tcttctcttc tcttaaaatc aaacgtaatc ataaataaag atcttcttgt
      121 ttaatttctc ttgatcctcg caaaatcaca gattcttgaa attctttttt cttgtcttga
      181 aattcttgag ttcttgagtt atgaaaagac aatggacaga gttatgaaat gataaatctc
      241 aaccaattcc ttgtttatca ttctatatca gttgtgattc ttcattggtt ttacgttatc
      301 tcttgaacaa aaaaacatgg caaacgcaga gaagacaagt tcaggttccg acatagatga
      361 gaagaaaaga aaacgcaagt tatcaaaccg cgaatctgca aggaggtcgc gtttgaagaa
      421 acagaagtta atggaagaca cgattcatga gatctccagt cttgaacgac gaatcaaaga
      481 gaacagtgag agatgtcgag ctgtaaaaca gaggcttgac tcggtcgaaa cggagaacgc
      541 gggtcttaga tcggagaaga tttggctctc gagttacgtt agcgatttag agaatatgat
      601 tgctacgacg agtttaacgc tgacgcagag tggtggtggc gattgtgtcg acgatcagaa
      661 cgcaaacgcg ggaatagcgg ttggagattg tagacgtaca ccgtggaaat tgagttgtgg
      721 ttctctacaa ccaatggcgt cctttaagac atgagatttg tgtattagtg tgtgttttac
      781 tttggtcatt ttatagtttt tgtaatcttt ttatatcgaa ttgtttcttc tcattacttt
      841 ctgaattctg atacaattgc atatcttatt gttttcaaca ttttcattta acgttatatg
      901 attttcg
//
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