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Arabidopsis thaliana Chaperone DnaJ-domain superfamily protein (ARC6), mRNA

NCBI Reference Sequence: NM_123613.4

FASTA Graphics 

LOCUS       NM_123613               3069 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana Chaperone DnaJ-domain superfamily protein
            (ARC6), mRNA.
ACCESSION   NM_123613
VERSION     NM_123613.4
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 3069)
  AUTHORS   Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
            Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
            Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
            Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
            Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
            Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
            Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
            Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
            Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
            Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
            Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
            See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
            Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
            Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
            Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
            Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
            Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
            Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
            Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
            Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
            Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
            Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
            Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
  CONSRTM   Kazusa DNA Research Institute; Cold Spring Harbor and Washington
            University in St Louis Sequencing Consortium; European Union
            Arabidopsis Genome Sequencing Consortium
  TITLE     Sequence and analysis of chromosome 5 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 823-826 (2000)
   PUBMED   11130714
REFERENCE   2  (bases 1 to 3069)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 3069)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 3069)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003076).
            
            On Sep 12, 2016 this sequence version replaced NM_123613.3.
FEATURES             Location/Qualifiers
     source          1..3069
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="5"
                     /ecotype="Columbia"
     gene            1..3069
                     /gene="ARC6"
                     /locus_tag="AT5G42480"
                     /gene_synonym="ACCUMULATION AND REPLICATION OF
                     CHLOROPLASTS 6; MDH9.18; MDH9_18"
                     /note="Shows homology to the cyanobacterial cell division
                     protein Ftn2, mutant only has two mesophyll cell
                     chloroplasts. Protein was localized to a ring at the
                     center of the chloroplasts. Probably involved in functions
                     in the assembly and/or stabilization of the
                     plastid-dividing FtsZ ring, inhibiting FtsZ filament
                     formation in the chloroplast."
                     /db_xref="Araport:AT5G42480"
                     /db_xref="GeneID:834255"
                     /db_xref="TAIR:AT5G42480"
     CDS             200..2605
                     /gene="ARC6"
                     /locus_tag="AT5G42480"
                     /gene_synonym="ACCUMULATION AND REPLICATION OF
                     CHLOROPLASTS 6; MDH9.18; MDH9_18"
                     /inference="Similar to RNA sequence,
                     EST:INSD:EH945297.1,INSD:EL247715.1,INSD:AV812946.1,
                     INSD:DR362578.1,INSD:EL301875.1,INSD:EL134725.1,
                     INSD:EL977128.1,INSD:ES182237.1,INSD:EL983374.1,
                     INSD:AI998415.1,INSD:EH845215.1,INSD:BP785511.1,
                     INSD:EH954895.1,INSD:ES091894.1,INSD:DR362579.1,
                     INSD:AV830764.1,INSD:EG513667.1,INSD:DR383347.1,
                     INSD:EG513730.1,INSD:BP620404.1,INSD:BP782886.1,
                     INSD:ES025100.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:BX841670.1,INSD:BX833051.1,INSD:BX833489.1,
                     INSD:AY091075.1,INSD:AY221469.1,INSD:AY150490.1"
                     /note="ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6
                     (ARC6); FUNCTIONS IN: protein binding; INVOLVED IN:
                     protein folding, chloroplast fission, chloroplast
                     organization; LOCATED IN: chloroplast, chloroplast inner
                     membrane, chloroplast envelope; EXPRESSED IN: 22 plant
                     structures; EXPRESSED DURING: 13 growth stages; CONTAINS
                     InterPro DOMAIN/s: Heat shock protein DnaJ, N-terminal
                     (InterPro:IPR001623); BEST Arabidopsis thaliana protein
                     match is: paralog of ARC6 (TAIR:AT3G19180.2); Has 1807
                     Blast hits to 1807 proteins in 277 species: Archae - 0;
                     Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
                     Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink)."
                     /codon_start=1
                     /product="Chaperone DnaJ-domain superfamily protein"
                     /protein_id="NP_199063.1"
                     /db_xref="GeneID:834255"
                     /db_xref="TAIR:AT5G42480"
                     /db_xref="Araport:AT5G42480"
                     /translation="MEALSHVGIGLSPFQLCRLPPATTKLRRSHNTSTTICSASKWAD
                     RLLSDFNFTSDSSSSSFATATTTATLVSPPPSIDRPERHVPIPIDFYQVLGAQTHFLT
                     DGIRRAFEARVSKPPQFGFSDDALISRRQILQAACETLSNPRSRREYNEGLLDDEEAT
                     VITDVPWDKVPGALCVLQEGGETEIVLRVGEALLKERLPKSFKQDVVLVMALAFLDVS
                     RDAMALDPPDFITGYEFVEEALKLLQEEGASSLAPDLRAQIDETLEEITPRYVLELLG
                     LPLGDDYAAKRLNGLSGVRNILWSVGGGGASALVGGLTREKFMNEAFLRMTAAEQVDL
                     FVATPSNIPAESFEVYEVALALVAQAFIGKKPHLLQDADKQFQQLQQAKVMAMEIPAM
                     LYDTRNNWEIDFGLERGLCALLIGKVDECRMWLGLDSEDSQYRNPAIVEFVLENSNRD
                     DNDDLPGLCKLLETWLAGVVFPRFRDTKDKKFKLGDYYDDPMVLSYLERVEVVQGSPL
                     AAAAAMARIGAEHVKASAMQALQKVFPSRYTDRNSAEPKDVQETVFSVDPVGNNVGRD
                     GEPGVFIAEAVRPSENFETNDYAIRAGVSESSVDETTVEMSVADMLKEASVKILAAGV
                     AIGLISLFSQKYFLKSSSSFQRKDMVSSMESDVATIGSVRADDSEALPRMDARTAENI
                     VSKWQKIKSLAFGPDHRIEMLPEVLDGRMLKIWTDRAAETAQLGLVYDYTLLKLSVDS
                     VTVSADGTRALVEATLEESACLSDLVHPENNATDVRTYTTRYEVFWSKSGWKITEGSV
                     LAS"
ORIGIN      
        1 ttagacgatt taacatcata aagtccgtgg cgactgtaac atcatagatt gttttttatt
       61 tttttcagta gctggtgatg ttttttgatt taacttatac tactcaaaat caaaattcca
      121 taaaccctag acgaccaaac agtctcttca atatgtaaaa cagaacaaag tttttgtagt
      181 agcctaaaaa gacactccca tggaagctct gagtcacgtc ggcattggtc tctccccatt
      241 ccaattatgc cgattaccac cggcgacgac aaagctccga cgtagccaca acacctctac
      301 aactatctgc tccgccagca aatgggccga ccgtcttctc tccgacttca atttcacctc
      361 cgattcctcc tcctcctcct tcgccaccgc caccaccacc gccactctcg tctctccgcc
      421 accatctatt gatcgtcccg aacgccacgt ccccatcccc attgatttct accaggtatt
      481 aggagctcaa acacatttct taaccgatgg aatcagaaga gcattcgaag ctagggtttc
      541 gaaaccgccg caattcggtt tcagcgacga cgctttaatc agccggagac agattcttca
      601 agctgcttgc gaaactctgt ctaatcctcg gtctagaaga gagtacaatg aaggtcttct
      661 tgatgatgaa gaagctacag tcatcactga tgttccttgg gataaggttc ctggtgctct
      721 ctgtgtattg caagaaggtg gtgagactga gatagttctt cgggttggtg aggctctgct
      781 taaggagagg ttgcctaagt cgtttaagca agatgtggtt ttagttatgg cgcttgcgtt
      841 tctcgatgtc tcgagggatg ctatggcatt ggatccacct gattttataa ctggttatga
      901 gtttgttgag gaagctttga agcttttaca ggaggaagga gcaagtagcc ttgcaccgga
      961 tttacgtgca caaattgatg agactttgga agagatcact ccgcgttatg tcttggagct
     1021 acttggctta ccgcttggtg atgattacgc tgcgaaaaga ctaaatggtt taagcggtgt
     1081 gcggaatatt ttgtggtctg ttggaggagg tggagcatca gctcttgttg ggggtttgac
     1141 ccgtgagaag tttatgaatg aggcgttttt acgaatgaca gctgctgagc aggttgatct
     1201 ttttgtagct accccaagca atattccagc agagtcattt gaagtttacg aagttgcact
     1261 tgctcttgtg gctcaagctt ttattggtaa gaagccacac cttttacagg atgctgataa
     1321 gcaattccag caacttcagc aggctaaggt aatggctatg gagattcctg cgatgttgta
     1381 tgatacacgg aataattggg agatagactt cggtctagaa aggggactct gtgcactgct
     1441 tataggcaaa gttgatgaat gccgtatgtg gttgggctta gacagtgagg attcacaata
     1501 taggaatcca gctattgtgg agtttgtttt ggagaattca aatcgtgatg acaatgatga
     1561 tctccctgga ctatgcaaat tgttggaaac ctggttggca ggggttgtct ttcctaggtt
     1621 cagagacacc aaagataaaa aatttaaact cggggactac tatgatgatc ctatggtttt
     1681 gagttacttg gaaagagtgg aggtagttca gggttctcct ttagctgctg ctgcagctat
     1741 ggcaaggatt ggagccgagc atgtgaaagc tagtgctatg caggcactgc agaaagtttt
     1801 tccttcccgc tatacagata gaaactcggc tgaacccaag gatgtgcaag agacagtgtt
     1861 tagtgtagat cctgttggta acaatgtagg ccgtgatggt gagcctggtg tctttattgc
     1921 agaagctgta agaccctctg aaaactttga aactaatgat tatgcaattc gagctggggt
     1981 ctcagagagt agcgttgatg aaactactgt tgaaatgtcc gttgctgata tgttaaagga
     2041 ggcaagtgtg aagatcctag ctgctggtgt ggcaattgga ctgatttcac tgttcagcca
     2101 gaagtatttt cttaaaagca gctcatcttt tcaacgcaag gatatggttt cttctatgga
     2161 atctgatgtc gctaccatag ggtcagtcag agctgacgat tcagaagcac ttcccagaat
     2221 ggatgctagg actgcagaga atatagtatc caagtggcag aagattaagt ctctggcttt
     2281 tgggcctgat caccgcatag aaatgttacc agaggttttg gatgggcgaa tgctgaagat
     2341 ttggactgac agagcagctg aaactgcgca gcttgggttg gtttatgatt atacactgtt
     2401 gaaactatct gttgacagtg tgacagtctc agcagatgga acccgtgctc tggtggaagc
     2461 aactctggag gagtctgctt gtctatctga tttggttcat ccagaaaaca atgctactga
     2521 tgtcagaacc tacacaacaa gatacgaagt tttctggtcc aagtcagggt ggaaaatcac
     2581 tgaaggctct gttcttgcat cataatatac tcatatgtag catgtctgag cttgcgagat
     2641 tctctttgtt ttgtaaattc tctctctaag ttagtgttta taaatgaaca caaaaaaatt
     2701 aacgttcttg gcacaccctt ttccttgatc taaactataa cataagggct acaattttgg
     2761 attctttcgc aatcaggtac aagcagaact tgacttatct tacattcaag cctttcacaa
     2821 cttaactatc agtgtttgga gacttctgtc ttgtttatgt tttataattg tgctctggtt
     2881 atcatctggt caagcgtata gcagagaatg atttggtaaa tctccagcca gatgatttta
     2941 cgttttcggt tctaggtaac aagctgaggc caaacatttc cttcggcatt cgacttggct
     3001 caacaaatcc aagcagctta gccacaagag aagcactttc ttttatgtgg tccatatctt
     3061 gggtgttgg
//
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