LOCUS NM_123613 3069 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana Chaperone DnaJ-domain superfamily protein
(ARC6), mRNA.
ACCESSION NM_123613
VERSION NM_123613.4
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 3069)
AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
CONSRTM Kazusa DNA Research Institute; Cold Spring Harbor and Washington
University in St Louis Sequencing Consortium; European Union
Arabidopsis Genome Sequencing Consortium
TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 823-826 (2000)
PUBMED 11130714
REFERENCE 2 (bases 1 to 3069)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3069)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 3069)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003076).
On Sep 12, 2016 this sequence version replaced NM_123613.3.
FEATURES Location/Qualifiers
source 1..3069
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="5"
/ecotype="Columbia"
gene 1..3069
/gene="ARC6"
/locus_tag="AT5G42480"
/gene_synonym="ACCUMULATION AND REPLICATION OF
CHLOROPLASTS 6; MDH9.18; MDH9_18"
/note="Shows homology to the cyanobacterial cell division
protein Ftn2, mutant only has two mesophyll cell
chloroplasts. Protein was localized to a ring at the
center of the chloroplasts. Probably involved in functions
in the assembly and/or stabilization of the
plastid-dividing FtsZ ring, inhibiting FtsZ filament
formation in the chloroplast."
/db_xref="Araport:AT5G42480"
/db_xref="GeneID:834255"
/db_xref="TAIR:AT5G42480"
CDS 200..2605
/gene="ARC6"
/locus_tag="AT5G42480"
/gene_synonym="ACCUMULATION AND REPLICATION OF
CHLOROPLASTS 6; MDH9.18; MDH9_18"
/inference="Similar to RNA sequence,
EST:INSD:EH945297.1,INSD:EL247715.1,INSD:AV812946.1,
INSD:DR362578.1,INSD:EL301875.1,INSD:EL134725.1,
INSD:EL977128.1,INSD:ES182237.1,INSD:EL983374.1,
INSD:AI998415.1,INSD:EH845215.1,INSD:BP785511.1,
INSD:EH954895.1,INSD:ES091894.1,INSD:DR362579.1,
INSD:AV830764.1,INSD:EG513667.1,INSD:DR383347.1,
INSD:EG513730.1,INSD:BP620404.1,INSD:BP782886.1,
INSD:ES025100.1"
/inference="similar to RNA sequence,
mRNA:INSD:BX841670.1,INSD:BX833051.1,INSD:BX833489.1,
INSD:AY091075.1,INSD:AY221469.1,INSD:AY150490.1"
/note="ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6
(ARC6); FUNCTIONS IN: protein binding; INVOLVED IN:
protein folding, chloroplast fission, chloroplast
organization; LOCATED IN: chloroplast, chloroplast inner
membrane, chloroplast envelope; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Heat shock protein DnaJ, N-terminal
(InterPro:IPR001623); BEST Arabidopsis thaliana protein
match is: paralog of ARC6 (TAIR:AT3G19180.2); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink)."
/codon_start=1
/product="Chaperone DnaJ-domain superfamily protein"
/protein_id="NP_199063.1"
/db_xref="GeneID:834255"
/db_xref="TAIR:AT5G42480"
/db_xref="Araport:AT5G42480"
/translation="MEALSHVGIGLSPFQLCRLPPATTKLRRSHNTSTTICSASKWAD
RLLSDFNFTSDSSSSSFATATTTATLVSPPPSIDRPERHVPIPIDFYQVLGAQTHFLT
DGIRRAFEARVSKPPQFGFSDDALISRRQILQAACETLSNPRSRREYNEGLLDDEEAT
VITDVPWDKVPGALCVLQEGGETEIVLRVGEALLKERLPKSFKQDVVLVMALAFLDVS
RDAMALDPPDFITGYEFVEEALKLLQEEGASSLAPDLRAQIDETLEEITPRYVLELLG
LPLGDDYAAKRLNGLSGVRNILWSVGGGGASALVGGLTREKFMNEAFLRMTAAEQVDL
FVATPSNIPAESFEVYEVALALVAQAFIGKKPHLLQDADKQFQQLQQAKVMAMEIPAM
LYDTRNNWEIDFGLERGLCALLIGKVDECRMWLGLDSEDSQYRNPAIVEFVLENSNRD
DNDDLPGLCKLLETWLAGVVFPRFRDTKDKKFKLGDYYDDPMVLSYLERVEVVQGSPL
AAAAAMARIGAEHVKASAMQALQKVFPSRYTDRNSAEPKDVQETVFSVDPVGNNVGRD
GEPGVFIAEAVRPSENFETNDYAIRAGVSESSVDETTVEMSVADMLKEASVKILAAGV
AIGLISLFSQKYFLKSSSSFQRKDMVSSMESDVATIGSVRADDSEALPRMDARTAENI
VSKWQKIKSLAFGPDHRIEMLPEVLDGRMLKIWTDRAAETAQLGLVYDYTLLKLSVDS
VTVSADGTRALVEATLEESACLSDLVHPENNATDVRTYTTRYEVFWSKSGWKITEGSV
LAS"
ORIGIN
1 ttagacgatt taacatcata aagtccgtgg cgactgtaac atcatagatt gttttttatt
61 tttttcagta gctggtgatg ttttttgatt taacttatac tactcaaaat caaaattcca
121 taaaccctag acgaccaaac agtctcttca atatgtaaaa cagaacaaag tttttgtagt
181 agcctaaaaa gacactccca tggaagctct gagtcacgtc ggcattggtc tctccccatt
241 ccaattatgc cgattaccac cggcgacgac aaagctccga cgtagccaca acacctctac
301 aactatctgc tccgccagca aatgggccga ccgtcttctc tccgacttca atttcacctc
361 cgattcctcc tcctcctcct tcgccaccgc caccaccacc gccactctcg tctctccgcc
421 accatctatt gatcgtcccg aacgccacgt ccccatcccc attgatttct accaggtatt
481 aggagctcaa acacatttct taaccgatgg aatcagaaga gcattcgaag ctagggtttc
541 gaaaccgccg caattcggtt tcagcgacga cgctttaatc agccggagac agattcttca
601 agctgcttgc gaaactctgt ctaatcctcg gtctagaaga gagtacaatg aaggtcttct
661 tgatgatgaa gaagctacag tcatcactga tgttccttgg gataaggttc ctggtgctct
721 ctgtgtattg caagaaggtg gtgagactga gatagttctt cgggttggtg aggctctgct
781 taaggagagg ttgcctaagt cgtttaagca agatgtggtt ttagttatgg cgcttgcgtt
841 tctcgatgtc tcgagggatg ctatggcatt ggatccacct gattttataa ctggttatga
901 gtttgttgag gaagctttga agcttttaca ggaggaagga gcaagtagcc ttgcaccgga
961 tttacgtgca caaattgatg agactttgga agagatcact ccgcgttatg tcttggagct
1021 acttggctta ccgcttggtg atgattacgc tgcgaaaaga ctaaatggtt taagcggtgt
1081 gcggaatatt ttgtggtctg ttggaggagg tggagcatca gctcttgttg ggggtttgac
1141 ccgtgagaag tttatgaatg aggcgttttt acgaatgaca gctgctgagc aggttgatct
1201 ttttgtagct accccaagca atattccagc agagtcattt gaagtttacg aagttgcact
1261 tgctcttgtg gctcaagctt ttattggtaa gaagccacac cttttacagg atgctgataa
1321 gcaattccag caacttcagc aggctaaggt aatggctatg gagattcctg cgatgttgta
1381 tgatacacgg aataattggg agatagactt cggtctagaa aggggactct gtgcactgct
1441 tataggcaaa gttgatgaat gccgtatgtg gttgggctta gacagtgagg attcacaata
1501 taggaatcca gctattgtgg agtttgtttt ggagaattca aatcgtgatg acaatgatga
1561 tctccctgga ctatgcaaat tgttggaaac ctggttggca ggggttgtct ttcctaggtt
1621 cagagacacc aaagataaaa aatttaaact cggggactac tatgatgatc ctatggtttt
1681 gagttacttg gaaagagtgg aggtagttca gggttctcct ttagctgctg ctgcagctat
1741 ggcaaggatt ggagccgagc atgtgaaagc tagtgctatg caggcactgc agaaagtttt
1801 tccttcccgc tatacagata gaaactcggc tgaacccaag gatgtgcaag agacagtgtt
1861 tagtgtagat cctgttggta acaatgtagg ccgtgatggt gagcctggtg tctttattgc
1921 agaagctgta agaccctctg aaaactttga aactaatgat tatgcaattc gagctggggt
1981 ctcagagagt agcgttgatg aaactactgt tgaaatgtcc gttgctgata tgttaaagga
2041 ggcaagtgtg aagatcctag ctgctggtgt ggcaattgga ctgatttcac tgttcagcca
2101 gaagtatttt cttaaaagca gctcatcttt tcaacgcaag gatatggttt cttctatgga
2161 atctgatgtc gctaccatag ggtcagtcag agctgacgat tcagaagcac ttcccagaat
2221 ggatgctagg actgcagaga atatagtatc caagtggcag aagattaagt ctctggcttt
2281 tgggcctgat caccgcatag aaatgttacc agaggttttg gatgggcgaa tgctgaagat
2341 ttggactgac agagcagctg aaactgcgca gcttgggttg gtttatgatt atacactgtt
2401 gaaactatct gttgacagtg tgacagtctc agcagatgga acccgtgctc tggtggaagc
2461 aactctggag gagtctgctt gtctatctga tttggttcat ccagaaaaca atgctactga
2521 tgtcagaacc tacacaacaa gatacgaagt tttctggtcc aagtcagggt ggaaaatcac
2581 tgaaggctct gttcttgcat cataatatac tcatatgtag catgtctgag cttgcgagat
2641 tctctttgtt ttgtaaattc tctctctaag ttagtgttta taaatgaaca caaaaaaatt
2701 aacgttcttg gcacaccctt ttccttgatc taaactataa cataagggct acaattttgg
2761 attctttcgc aatcaggtac aagcagaact tgacttatct tacattcaag cctttcacaa
2821 cttaactatc agtgtttgga gacttctgtc ttgtttatgt tttataattg tgctctggtt
2881 atcatctggt caagcgtata gcagagaatg atttggtaaa tctccagcca gatgatttta
2941 cgttttcggt tctaggtaac aagctgaggc caaacatttc cttcggcatt cgacttggct
3001 caacaaatcc aagcagctta gccacaagag aagcactttc ttttatgtgg tccatatctt
3061 gggtgttgg
//