LOCUS NM_123585 1005 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana RING/U-box superfamily protein (AT5G42200),
mRNA.
ACCESSION NM_123585
VERSION NM_123585.4
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1005)
AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
CONSRTM Kazusa DNA Research Institute; Cold Spring Harbor and Washington
University in St Louis Sequencing Consortium; European Union
Arabidopsis Genome Sequencing Consortium
TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 823-826 (2000)
PUBMED 11130714
REFERENCE 2 (bases 1 to 1005)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1005)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1005)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003076).
On Sep 12, 2016 this sequence version replaced NM_123585.3.
FEATURES Location/Qualifiers
source 1..1005
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="5"
/ecotype="Columbia"
gene 1..1005
/locus_tag="AT5G42200"
/gene_synonym="MJC20.31; MJC20_31"
/db_xref="Araport:AT5G42200"
/db_xref="GeneID:834225"
/db_xref="TAIR:AT5G42200"
CDS 238..729
/locus_tag="AT5G42200"
/gene_synonym="MJC20.31; MJC20_31"
/inference="Similar to RNA sequence,
EST:INSD:DR323139.1,INSD:EH906320.1,INSD:DR370688.1,
INSD:EH908154.1,INSD:DR323178.1,INSD:AI993818.1,
INSD:EL292113.1,INSD:EH847484.1,INSD:EG438796.1,
INSD:EH907914.1,INSD:EH975086.1,INSD:EH966107.1,
INSD:DR323138.1,INSD:N97143.1,INSD:EL318732.1,
INSD:AA650778.1,INSD:AU227638.1,INSD:EL047322.1,
INSD:AA394863.1,INSD:EH948876.1,INSD:EL120180.1,
INSD:EH989291.1,INSD:EL293820.1,INSD:EH823097.1,
INSD:EL175387.1,INSD:EG518819.1,INSD:EG438793.1,
INSD:EL223308.1,INSD:EH862248.1,INSD:EG438790.1,
INSD:AU236679.1,INSD:EL300277.1,INSD:EL150926.1,
INSD:EH859642.1,INSD:DR323179.1,INSD:BE523922.1"
/inference="similar to RNA sequence,
mRNA:INSD:BT003837.1,INSD:BT005191.1,INSD:AY088186.1,
INSD:BX832997.1"
/note="RING/U-box superfamily protein; CONTAINS InterPro
DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841),
Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST
Arabidopsis thaliana protein match is: RING/U-box
superfamily protein (TAIR:AT1G49220.1); Has 1807 Blast
hits to 1807 proteins in 277 species: Archae - 0; Bacteria
- 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses -
0; Other Eukaryotes - 339 (source: NCBI BLink)."
/codon_start=1
/product="RING/U-box superfamily protein"
/protein_id="NP_199035.1"
/db_xref="GeneID:834225"
/db_xref="TAIR:AT5G42200"
/db_xref="Araport:AT5G42200"
/translation="MHYTRISPALVPSLSPTAAAESSGGGTMIATVFMALLLPCVGMC
IVFLIYLFLLWCSTRRRIERLRFAEPVKPVTGKGLSVLELEKIPKLTGRELAVIARST
ECAVCLEDIESGQSTRLVPGCNHGFHQLCADTWLSNHTVCPVCRAELAPNLPQCNENQ
SPC"
ORIGIN
1 cgaaaagaaa caaaatcata acaataatag tttaacctaa accctgatat ttggctctac
61 cgtgtcctag cctctcctct ttgtataaat agccgttact ctttttcaca tgattttcac
121 taccaacaac acttagagaa caagcagagg aatataactt tttttttctt tttccttttt
181 gcttttttac aaccaaaaaa ataaagcaag ccgtagagag caagagacgg tgtaaagatg
241 cactacacac gcatctcgcc ggctttagta ccatctctat caccaaccgc cgcggctgaa
301 tctagcggtg gtgggacgat gatagctact gttttcatgg cccttctcct cccctgcgtc
361 ggcatgtgca tcgtcttcct aatctatcta ttcctcttgt ggtgctccac acggcgtcgt
421 atcgaacgcc ttcgatttgc tgaaccggtt aaaccggtca caggtaaagg cctttcggtg
481 ttggagctcg agaaaatccc taaactcacc ggaagagagc tagccgtaat agctagatca
541 acggaatgtg ctgtttgcct tgaagatata gagagtggtc aatcgactcg tctagttccc
601 ggttgcaacc atgggtttca ccaattatgt gctgatacgt ggctatctaa ccacacggtt
661 tgtccagttt gccgcgccga gctggctccg aacctacctc aatgtaatga aaatcaaagt
721 ccatgttaga aacagaattt tcaaaaacat tctttccttc ttttttactc gttttgtgta
781 cttctcttgt ttttcccttt tcttagtttt gtgtaagcgt tatagagaga gaagtttcca
841 ggttgtaact agccttgttg tttttttttg tacatgaaat tagttttaga gtaaattacg
901 aaatttacag ttatgtcatt gtatttacaa caatttttct tcaaccatta caataagtat
961 atcaatgata gagttaaact ttgggtccaa caaaaaataa ataaa
//