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Arabidopsis thaliana F-box/RNI-like superfamily protein (AT5G38570), partial mRNA

NCBI Reference Sequence: NM_123218.2

FASTA Graphics 

LOCUS       NM_123218               1140 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana F-box/RNI-like superfamily protein
            (AT5G38570), partial mRNA.
ACCESSION   NM_123218
VERSION     NM_123218.2
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1140)
  AUTHORS   Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
            Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
            Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
            Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
            Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
            Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
            Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
            Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
            Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
            Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
            Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
            See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
            Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
            Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
            Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
            Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
            Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
            Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
            Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
            Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
            Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
            Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
            Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
  CONSRTM   Kazusa DNA Research Institute; Cold Spring Harbor and Washington
            University in St Louis Sequencing Consortium; European Union
            Arabidopsis Genome Sequencing Consortium
  TITLE     Sequence and analysis of chromosome 5 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 823-826 (2000)
   PUBMED   11130714
REFERENCE   2  (bases 1 to 1140)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1140)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1140)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003076).
            
            On Aug 20, 2002 this sequence version replaced NM_123218.1.
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..1140
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="5"
                     /ecotype="Columbia"
     gene            <1..>1140
                     /locus_tag="AT5G38570"
                     /gene_synonym="MBB18.12; MBB18_12"
                     /db_xref="Araport:AT5G38570"
                     /db_xref="GeneID:833846"
                     /db_xref="TAIR:AT5G38570"
     CDS             1..1140
                     /locus_tag="AT5G38570"
                     /gene_synonym="MBB18.12; MBB18_12"
                     /note="F-box/RNI-like superfamily protein; CONTAINS
                     InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like
                     (InterPro:IPR006566), F-box domain, Skp2-like
                     (InterPro:IPR022364); BEST Arabidopsis thaliana protein
                     match is: F-box/RNI-like/FBD-like domains-containing
                     protein (TAIR:AT5G38590.2); Has 30201 Blast hits to 17322
                     proteins in 780 species: Archae - 12; Bacteria - 1396;
                     Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
                     Other Eukaryotes - 2996 (source: NCBI BLink)."
                     /codon_start=1
                     /product="F-box/RNI-like superfamily protein"
                     /protein_id="NP_198673.2"
                     /db_xref="GeneID:833846"
                     /db_xref="TAIR:AT5G38570"
                     /db_xref="Araport:AT5G38570"
                     /translation="MDNINGLPDDLLVKILSFVPTYVAVSTCVLSKRWEFLWMWLPNL
                     EFVSPWDSRPGIVDFINKKLPIHRAPVIERLCIHINSNPHIKPEYIKRWIEIAVSHYV
                     RELQIDYHSKTKITLQLEAESYFIDGKYLQQLISGCPVLEDLSLRFCCNDNLREFTVI
                     IPSLQSLSLFLFGNSNLNRYKIDTPSLKYLKLEDWNDPEHYSWTNMPKLREAYVDVES
                     SNHLKTLIGSITSVKHLTICCLEDYLYGDGFIFNHLEHLKLCMCPFDSSNLLGQLLKG
                     SPNLQVLDIFEMKRNDIVCWNQPSSVLECLLSSLKILNWSAYFGRPQDRDIAVYILKN
                     ACHLKTATFLTDKRINDVRRLKMIKELRLSPRASSTCQLVFGEDF"
ORIGIN      
        1 atggacaaca tcaatggatt gcctgatgac ttgctggtga agatactatc gtttgtccca
       61 acatatgttg ctgtatccac ttgcgttttg tctaaacgat gggagtttct atggatgtgg
      121 ttgcctaatc tcgagttcgt ttctccgtgg gactcaaggc ctggaattgt ggattttatc
      181 aacaagaagt tgccaataca tagagctccc gtcatagaaa gattgtgtat ccacataaat
      241 tctaatccac acattaaacc tgaatatatc aaaaggtgga ttgaaatcgc agtttctcac
      301 tatgtacgtg aactgcaaat cgattatcat tccaagacta aaatcacttt gcaacttgaa
      361 gctgagtcgt atttcataga tggaaaatat cttcaacagc ttatatctgg ttgtcctgtt
      421 cttgaagatc tatctctacg attttgttgt aatgacaatt taagagagtt cactgtaatc
      481 atcccgtctt tgcaaagttt gtcactattt ttatttggta attcgaattt gaataggtat
      541 aagatagata ctccttcatt aaagtatttg aaacttgagg actggaatga tccagaacac
      601 tactcatgga ctaatatgcc taagctgagg gaagcatatg tcgatgttga atcctctaat
      661 catctcaaga ctcttattgg atcaatcaca tcagtcaagc atctcacaat atgttgttta
      721 gaggattatt tgtatggtga tggttttatt ttcaaccatc ttgaacatct gaaactatgt
      781 atgtgcccat ttgattcgtc gaatcttttg ggccaattgc tcaaaggttc tcctaaccta
      841 caagtattag acatctttga aatgaaacgt aatgatattg tttgctggaa tcaaccgagt
      901 tctgttcttg agtgcttgtt gtcgagtcta aagatattga actggtcagc atattttggg
      961 agaccacaag atagagatat tgcagtttac atcttgaaaa acgcttgtca cttaaagact
     1021 gcaacattct tgactgataa aagaataaat gatgttcgaa gacttaagat gatcaaggag
     1081 ttaagacttt ctccccgagc ttcaagcaca tgccaactcg tattcggtga ggacttttaa
//
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Reference sequence information

  • RefSeq protein product
    See the reference protein sequence for F-box/RNI-like superfamily protein (NP_198673.2).

More about the AT5G38570 gene

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