LOCUS NM_123218 1140 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana F-box/RNI-like superfamily protein
(AT5G38570), partial mRNA.
ACCESSION NM_123218
VERSION NM_123218.2
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1140)
AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
CONSRTM Kazusa DNA Research Institute; Cold Spring Harbor and Washington
University in St Louis Sequencing Consortium; European Union
Arabidopsis Genome Sequencing Consortium
TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 823-826 (2000)
PUBMED 11130714
REFERENCE 2 (bases 1 to 1140)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1140)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1140)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003076).
On Aug 20, 2002 this sequence version replaced NM_123218.1.
COMPLETENESS: incomplete on both ends.
FEATURES Location/Qualifiers
source 1..1140
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="5"
/ecotype="Columbia"
gene <1..>1140
/locus_tag="AT5G38570"
/gene_synonym="MBB18.12; MBB18_12"
/db_xref="Araport:AT5G38570"
/db_xref="GeneID:833846"
/db_xref="TAIR:AT5G38570"
CDS 1..1140
/locus_tag="AT5G38570"
/gene_synonym="MBB18.12; MBB18_12"
/note="F-box/RNI-like superfamily protein; CONTAINS
InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like
(InterPro:IPR006566), F-box domain, Skp2-like
(InterPro:IPR022364); BEST Arabidopsis thaliana protein
match is: F-box/RNI-like/FBD-like domains-containing
protein (TAIR:AT5G38590.2); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink)."
/codon_start=1
/product="F-box/RNI-like superfamily protein"
/protein_id="NP_198673.2"
/db_xref="GeneID:833846"
/db_xref="TAIR:AT5G38570"
/db_xref="Araport:AT5G38570"
/translation="MDNINGLPDDLLVKILSFVPTYVAVSTCVLSKRWEFLWMWLPNL
EFVSPWDSRPGIVDFINKKLPIHRAPVIERLCIHINSNPHIKPEYIKRWIEIAVSHYV
RELQIDYHSKTKITLQLEAESYFIDGKYLQQLISGCPVLEDLSLRFCCNDNLREFTVI
IPSLQSLSLFLFGNSNLNRYKIDTPSLKYLKLEDWNDPEHYSWTNMPKLREAYVDVES
SNHLKTLIGSITSVKHLTICCLEDYLYGDGFIFNHLEHLKLCMCPFDSSNLLGQLLKG
SPNLQVLDIFEMKRNDIVCWNQPSSVLECLLSSLKILNWSAYFGRPQDRDIAVYILKN
ACHLKTATFLTDKRINDVRRLKMIKELRLSPRASSTCQLVFGEDF"
ORIGIN
1 atggacaaca tcaatggatt gcctgatgac ttgctggtga agatactatc gtttgtccca
61 acatatgttg ctgtatccac ttgcgttttg tctaaacgat gggagtttct atggatgtgg
121 ttgcctaatc tcgagttcgt ttctccgtgg gactcaaggc ctggaattgt ggattttatc
181 aacaagaagt tgccaataca tagagctccc gtcatagaaa gattgtgtat ccacataaat
241 tctaatccac acattaaacc tgaatatatc aaaaggtgga ttgaaatcgc agtttctcac
301 tatgtacgtg aactgcaaat cgattatcat tccaagacta aaatcacttt gcaacttgaa
361 gctgagtcgt atttcataga tggaaaatat cttcaacagc ttatatctgg ttgtcctgtt
421 cttgaagatc tatctctacg attttgttgt aatgacaatt taagagagtt cactgtaatc
481 atcccgtctt tgcaaagttt gtcactattt ttatttggta attcgaattt gaataggtat
541 aagatagata ctccttcatt aaagtatttg aaacttgagg actggaatga tccagaacac
601 tactcatgga ctaatatgcc taagctgagg gaagcatatg tcgatgttga atcctctaat
661 catctcaaga ctcttattgg atcaatcaca tcagtcaagc atctcacaat atgttgttta
721 gaggattatt tgtatggtga tggttttatt ttcaaccatc ttgaacatct gaaactatgt
781 atgtgcccat ttgattcgtc gaatcttttg ggccaattgc tcaaaggttc tcctaaccta
841 caagtattag acatctttga aatgaaacgt aatgatattg tttgctggaa tcaaccgagt
901 tctgttcttg agtgcttgtt gtcgagtcta aagatattga actggtcagc atattttggg
961 agaccacaag atagagatat tgcagtttac atcttgaaaa acgcttgtca cttaaagact
1021 gcaacattct tgactgataa aagaataaat gatgttcgaa gacttaagat gatcaaggag
1081 ttaagacttt ctccccgagc ttcaagcaca tgccaactcg tattcggtga ggacttttaa
//