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Arabidopsis thaliana RING/U-box superfamily protein (AT5G18260), mRNA

NCBI Reference Sequence: NM_121831.3

FASTA Graphics 

LOCUS       NM_121831               1427 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana RING/U-box superfamily protein (AT5G18260),
            mRNA.
ACCESSION   NM_121831
VERSION     NM_121831.3
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1427)
  AUTHORS   Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
            Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
            Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
            Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
            Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
            Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
            Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
            Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
            Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
            Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
            Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
            See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
            Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
            Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
            Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
            Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
            Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
            Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
            Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
            Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
            Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
            Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
            Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
  CONSRTM   Kazusa DNA Research Institute; Cold Spring Harbor and Washington
            University in St Louis Sequencing Consortium; European Union
            Arabidopsis Genome Sequencing Consortium
  TITLE     Sequence and analysis of chromosome 5 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 823-826 (2000)
   PUBMED   11130714
REFERENCE   2  (bases 1 to 1427)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1427)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1427)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003076).
            
            On May 13, 2003 this sequence version replaced NM_121831.2.
FEATURES             Location/Qualifiers
     source          1..1427
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="5"
                     /ecotype="Columbia"
     gene            1..1427
                     /locus_tag="AT5G18260"
                     /gene_synonym="MRG7.22; MRG7_22"
                     /db_xref="Araport:AT5G18260"
                     /db_xref="GeneID:831944"
                     /db_xref="TAIR:AT5G18260"
     CDS             441..1403
                     /locus_tag="AT5G18260"
                     /gene_synonym="MRG7.22; MRG7_22"
                     /inference="Similar to RNA sequence,
                     EST:INSD:EH866987.1,INSD:ES065791.1,INSD:EH921348.1,
                     INSD:EH944160.1,INSD:EH959095.1,INSD:EL137236.1,
                     INSD:ES151012.1,INSD:EH887200.1,INSD:EL225128.1,
                     INSD:EL052964.1,INSD:AV830799.1,INSD:EL109006.1,
                     INSD:ES199736.1,INSD:ES109284.1,INSD:AV813065.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:AY096474.1,INSD:AY072182.1"
                     /note="RING/U-box superfamily protein; FUNCTIONS IN: zinc
                     ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger,
                     RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana
                     protein match is: RING/U-box superfamily protein
                     (TAIR:AT1G14180.2); Has 1807 Blast hits to 1807 proteins
                     in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
                     Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
                     339 (source: NCBI BLink)."
                     /codon_start=1
                     /product="RING/U-box superfamily protein"
                     /protein_id="NP_197327.1"
                     /db_xref="GeneID:831944"
                     /db_xref="TAIR:AT5G18260"
                     /db_xref="Araport:AT5G18260"
                     /translation="MSDESPAFALHSGSSRQRKSLEFRFQQSPRWAPYSSASDGNEQK
                     TSLVNNSLTRPNSSNPQCLNEENGFDRDSTAISTSFRSLLSLSESSVPWETPTNNQSS
                     SLTHCSYPRVFCNPVSVCENPEPDHTQEDSSTNPGSSIMMSTRNHQGSPVEEEVSPNS
                     SSNDMLLDVERSNDTEVANPRSEQGSMTHQRCGICKKLLSQKSPWSSYKILRSRDMPA
                     TGVFPCHHVYHVECLDKATPTAQTRDPSCPVCSNTIGVMEQPLIAPETLQMALRSLRR
                     SRTALELETVRVPSNDNQRRHNTRRSHKWDKLSCCLNISFSSSS"
ORIGIN      
        1 aaagaaaaag taaagagaag tgcgctctct cttactctca tcgattttac aaaatatcag
       61 ccatctccaa attacagagt tctttctcaa acccaggtta tcattttcca aagtttgaag
      121 gtgtgttcct gtccctgcag agatggcttg gtacttatga atgtgtttat actaatcact
      181 aaactcgggg attttggctg tataatcaag aatttcattt attaacattg tttggccttg
      241 aaggcggtga ggataaacca gagctcaaaa cgggtgcact ctgttgtatt gtggcctcaa
      301 ggccactggt tacaacaaaa tcttcacccc acagcggaag ggatattcct caatcaagtc
      361 aagctgaagc cttgcaatgg cggacaaatt tcagcttctc acctgctgct ggctatacta
      421 gagatggttt ggaacaggat atgagtgatg agagtcccgc ttttgcattg cactcgggca
      481 gcagtagaca aagaaaaagt ttggaattca gatttcagca gtcgccaaga tgggctccat
      541 actcatctgc ttctgatggg aacgaacaga aaacctcctt ggttaataat agtctaacaa
      601 gaccaaatag ctcaaatcct caatgcttaa acgaggagaa cggttttgat agagacagta
      661 ccgccatctc aacgagtttc agatcgttgc tgtctctttc agagtcatct gtcccatggg
      721 agactccgac caacaatcag tcttccagcc ttactcactg ctcttaccct cgagtcttct
      781 gcaacccggt ttcagtttgt gagaatcctg aacctgatca tacgcaagaa gactcgtcca
      841 caaatcctgg ttccagtatc atgatgtcca caagaaacca ccaaggctca ccagtagagg
      901 aagaagtatc accaaactcg agcagcaatg acatgttgct agatgttgaa agatccaatg
      961 acacagaagt cgcaaacccg agatctgaac aaggttcaat gacacatcaa agatgcggga
     1021 tttgcaagaa gcttttatct cagaaatctc catggagctc atacaagata ttgagatcca
     1081 gagacatgcc agccactggt gttttcccct gccatcacgt ctaccatgtt gagtgtttag
     1141 acaaagcaac cccaacagct caaaccagag acccgtcttg tcctgtttgc tcaaacacca
     1201 ttggagtaat ggaacagcca ctgatagcac ctgaaacatt gcaaatggct ctaagatctc
     1261 tcagaagaag ccgcacagct ctagaattag agacagtaag agtcccttcc aatgacaatc
     1321 aaagaagaca caataccaga agaagccata aatgggacaa actcagctgc tgtttgaata
     1381 taagcttctc atcttcttcc tagaaatcca acatgacccg attaaat
//
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