LOCUS NM_121831 1427 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana RING/U-box superfamily protein (AT5G18260),
mRNA.
ACCESSION NM_121831
VERSION NM_121831.3
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1427)
AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
CONSRTM Kazusa DNA Research Institute; Cold Spring Harbor and Washington
University in St Louis Sequencing Consortium; European Union
Arabidopsis Genome Sequencing Consortium
TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 823-826 (2000)
PUBMED 11130714
REFERENCE 2 (bases 1 to 1427)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1427)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1427)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003076).
On May 13, 2003 this sequence version replaced NM_121831.2.
FEATURES Location/Qualifiers
source 1..1427
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="5"
/ecotype="Columbia"
gene 1..1427
/locus_tag="AT5G18260"
/gene_synonym="MRG7.22; MRG7_22"
/db_xref="Araport:AT5G18260"
/db_xref="GeneID:831944"
/db_xref="TAIR:AT5G18260"
CDS 441..1403
/locus_tag="AT5G18260"
/gene_synonym="MRG7.22; MRG7_22"
/inference="Similar to RNA sequence,
EST:INSD:EH866987.1,INSD:ES065791.1,INSD:EH921348.1,
INSD:EH944160.1,INSD:EH959095.1,INSD:EL137236.1,
INSD:ES151012.1,INSD:EH887200.1,INSD:EL225128.1,
INSD:EL052964.1,INSD:AV830799.1,INSD:EL109006.1,
INSD:ES199736.1,INSD:ES109284.1,INSD:AV813065.1"
/inference="similar to RNA sequence,
mRNA:INSD:AY096474.1,INSD:AY072182.1"
/note="RING/U-box superfamily protein; FUNCTIONS IN: zinc
ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger,
RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana
protein match is: RING/U-box superfamily protein
(TAIR:AT1G14180.2); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink)."
/codon_start=1
/product="RING/U-box superfamily protein"
/protein_id="NP_197327.1"
/db_xref="GeneID:831944"
/db_xref="TAIR:AT5G18260"
/db_xref="Araport:AT5G18260"
/translation="MSDESPAFALHSGSSRQRKSLEFRFQQSPRWAPYSSASDGNEQK
TSLVNNSLTRPNSSNPQCLNEENGFDRDSTAISTSFRSLLSLSESSVPWETPTNNQSS
SLTHCSYPRVFCNPVSVCENPEPDHTQEDSSTNPGSSIMMSTRNHQGSPVEEEVSPNS
SSNDMLLDVERSNDTEVANPRSEQGSMTHQRCGICKKLLSQKSPWSSYKILRSRDMPA
TGVFPCHHVYHVECLDKATPTAQTRDPSCPVCSNTIGVMEQPLIAPETLQMALRSLRR
SRTALELETVRVPSNDNQRRHNTRRSHKWDKLSCCLNISFSSSS"
ORIGIN
1 aaagaaaaag taaagagaag tgcgctctct cttactctca tcgattttac aaaatatcag
61 ccatctccaa attacagagt tctttctcaa acccaggtta tcattttcca aagtttgaag
121 gtgtgttcct gtccctgcag agatggcttg gtacttatga atgtgtttat actaatcact
181 aaactcgggg attttggctg tataatcaag aatttcattt attaacattg tttggccttg
241 aaggcggtga ggataaacca gagctcaaaa cgggtgcact ctgttgtatt gtggcctcaa
301 ggccactggt tacaacaaaa tcttcacccc acagcggaag ggatattcct caatcaagtc
361 aagctgaagc cttgcaatgg cggacaaatt tcagcttctc acctgctgct ggctatacta
421 gagatggttt ggaacaggat atgagtgatg agagtcccgc ttttgcattg cactcgggca
481 gcagtagaca aagaaaaagt ttggaattca gatttcagca gtcgccaaga tgggctccat
541 actcatctgc ttctgatggg aacgaacaga aaacctcctt ggttaataat agtctaacaa
601 gaccaaatag ctcaaatcct caatgcttaa acgaggagaa cggttttgat agagacagta
661 ccgccatctc aacgagtttc agatcgttgc tgtctctttc agagtcatct gtcccatggg
721 agactccgac caacaatcag tcttccagcc ttactcactg ctcttaccct cgagtcttct
781 gcaacccggt ttcagtttgt gagaatcctg aacctgatca tacgcaagaa gactcgtcca
841 caaatcctgg ttccagtatc atgatgtcca caagaaacca ccaaggctca ccagtagagg
901 aagaagtatc accaaactcg agcagcaatg acatgttgct agatgttgaa agatccaatg
961 acacagaagt cgcaaacccg agatctgaac aaggttcaat gacacatcaa agatgcggga
1021 tttgcaagaa gcttttatct cagaaatctc catggagctc atacaagata ttgagatcca
1081 gagacatgcc agccactggt gttttcccct gccatcacgt ctaccatgtt gagtgtttag
1141 acaaagcaac cccaacagct caaaccagag acccgtcttg tcctgtttgc tcaaacacca
1201 ttggagtaat ggaacagcca ctgatagcac ctgaaacatt gcaaatggct ctaagatctc
1261 tcagaagaag ccgcacagct ctagaattag agacagtaag agtcccttcc aatgacaatc
1321 aaagaagaca caataccaga agaagccata aatgggacaa actcagctgc tgtttgaata
1381 taagcttctc atcttcttcc tagaaatcca acatgacccg attaaat
//