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Arabidopsis thaliana uncharacterized protein (AT5G07950), mRNA

NCBI Reference Sequence: NM_120877.3

FASTA Graphics 

LOCUS       NM_120877               1247 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana uncharacterized protein (AT5G07950), mRNA.
ACCESSION   NM_120877
VERSION     NM_120877.3
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1247)
  AUTHORS   Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
            Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
            Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
            Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
            Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
            Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
            Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
            Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
            Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
            Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
            Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
            See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
            Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
            Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
            Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
            Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
            Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
            Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
            Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
            Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
            Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
            Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
            Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
  CONSRTM   Kazusa DNA Research Institute; Cold Spring Harbor and Washington
            University in St Louis Sequencing Consortium; European Union
            Arabidopsis Genome Sequencing Consortium
  TITLE     Sequence and analysis of chromosome 5 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 823-826 (2000)
   PUBMED   11130714
REFERENCE   2  (bases 1 to 1247)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1247)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1247)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003076).
            
            On Apr 18, 2007 this sequence version replaced NM_120877.2.
FEATURES             Location/Qualifiers
     source          1..1247
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="5"
                     /ecotype="Columbia"
     gene            1..1247
                     /locus_tag="AT5G07950"
                     /gene_synonym="F13G24.150"
                     /db_xref="Araport:AT5G07950"
                     /db_xref="GeneID:830689"
                     /db_xref="TAIR:AT5G07950"
     CDS             90..1001
                     /locus_tag="AT5G07950"
                     /gene_synonym="F13G24.150"
                     /inference="Similar to RNA sequence,
                     EST:INSD:EL998250.1,INSD:ES028169.1,INSD:AV548229.1,
                     INSD:ES066507.1,INSD:AV547616.1,INSD:ES136354.1,
                     INSD:EH869714.1,INSD:DR370652.1,INSD:AU228045.1,
                     INSD:AV441464.1,INSD:ES045615.1,INSD:EL030512.1,
                     INSD:ES071515.1,INSD:AV546536.1,INSD:DR238547.1,
                     INSD:ES168325.1,INSD:ES164479.1,INSD:AV546451.1,
                     INSD:DR238548.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:BX830384.1,INSD:BX830370.1,INSD:AY087997.1"
                     /note="unknown protein; FUNCTIONS IN: molecular_function
                     unknown; INVOLVED IN: biological_process unknown; LOCATED
                     IN: chloroplast; EXPRESSED IN: 20 plant structures;
                     EXPRESSED DURING: 9 growth stages; Has 30201 Blast hits to
                     17322 proteins in 780 species: Archae - 12; Bacteria -
                     1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
                     Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
                     BLink)."
                     /codon_start=1
                     /product="uncharacterized protein"
                     /protein_id="NP_568186.1"
                     /db_xref="GeneID:830689"
                     /db_xref="TAIR:AT5G07950"
                     /db_xref="Araport:AT5G07950"
                     /translation="MSISQFPPPASPSPASSSRSLASSSPSPGSFSSSMRLWRPAAQR
                     NLRNQWSNLSNCRQQWIVACSAGRSHATLLVNSYLSQKYMPMMELGVLSDMFDIDKKA
                     LKKLFTQQSSYRIKLLSSYKEMVAVVVEMVNASRSLRCYTKLSTGSLIQFSGTKEDSN
                     DAGDCGGIPVFNFWNVSAFEKMAEELVEMFKREVMLKRLLIMELISLSTEVPQPINNS
                     WSDELYHGEFDHLTKCSLYSMEVAKPVLPRVKDYNIGSSSISHTNQPTAEILQIYLTT
                     WLAEVNIDTHRVDEILALVGEEIRVTF"
ORIGIN      
        1 aaaacaaact atcgccggcc gttcaattcc cggcgacgta acagagttta ggagtgtgac
       61 tcaagctcaa aaaactcgtt ttgtattcga tgagcatctc gcagtttccg ccgcctgctt
      121 ctccatctcc ggcgtcttct tcgcgatcgc tggcttcttc atctccatct ccggggagtt
      181 tttcgtcatc gatgaggcta tggagaccag ctgctcagcg gaatcttagg aaccagtggt
      241 ctaacctgtc gaattgtcgg caacagtgga tcgtcgcttg ttctgcggga agatctcacg
      301 ctactttgct agtcaattcg tatctgtcac aaaagtatat gccaatgatg gagcttggtg
      361 tgttgagtga catgtttgat atcgacaaga aagctttgaa gaagctgttt acgcaacaga
      421 gttcctatcg aatcaagctt ttatcttcgt acaaggaaat ggtagctgtt gttgttgaga
      481 tggtaaatgc aagcagatct ctgagatgtt acacgaagct gagtaccggg tcacttatac
      541 agttctctgg cactaaggaa gattcaaatg atgctggaga ttgcggtggc attcctgtgt
      601 ttaatttttg gaatgtctct gcatttgaga agatggctga ggagcttgtg gagatgttca
      661 aacgcgaagt aatgctaaag agattgctca taatggaact gatctcttta agcactgaag
      721 ttcctcaacc catcaacaac agttggtcag atgagcttta ccatggagaa tttgatcatc
      781 tcaccaaatg ttctttatat tctatggaag tagctaagcc agttctcccc agagtgaaag
      841 attataatat cggtagttct tctatatcac ataccaacca gccaaccgca gaaattttgc
      901 agatttactt gacaacttgg cttgcagaag taaacatcga cactcatagg gtggatgaga
      961 tattagcttt ggttggggaa gaaattagag tcaccttcta aatctcgaaa ggtgttcaca
     1021 agttcagctt ctggttaagt ttcagtgact tttatacaaa gcacaactga ttctacaaaa
     1081 gtactcaagg acttgagaga gagagaggtg gttagaaccg tagctgtgta aacaaaaatt
     1141 gccacttact gctatatttt agcttgttta ctggatttct tactggggca ctgtactgag
     1201 cgatatttct ttactaaagt atacaaatgg atttaactta caatgtt
//
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Reference sequence information

  • RefSeq protein product
    See the reference protein sequence for uncharacterized protein AT5G07950 (NP_568186.1).

More about the AT5G07950 gene

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