LOCUS NM_120877 1247 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana uncharacterized protein (AT5G07950), mRNA.
ACCESSION NM_120877
VERSION NM_120877.3
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1247)
AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
CONSRTM Kazusa DNA Research Institute; Cold Spring Harbor and Washington
University in St Louis Sequencing Consortium; European Union
Arabidopsis Genome Sequencing Consortium
TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 823-826 (2000)
PUBMED 11130714
REFERENCE 2 (bases 1 to 1247)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1247)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1247)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003076).
On Apr 18, 2007 this sequence version replaced NM_120877.2.
FEATURES Location/Qualifiers
source 1..1247
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="5"
/ecotype="Columbia"
gene 1..1247
/locus_tag="AT5G07950"
/gene_synonym="F13G24.150"
/db_xref="Araport:AT5G07950"
/db_xref="GeneID:830689"
/db_xref="TAIR:AT5G07950"
CDS 90..1001
/locus_tag="AT5G07950"
/gene_synonym="F13G24.150"
/inference="Similar to RNA sequence,
EST:INSD:EL998250.1,INSD:ES028169.1,INSD:AV548229.1,
INSD:ES066507.1,INSD:AV547616.1,INSD:ES136354.1,
INSD:EH869714.1,INSD:DR370652.1,INSD:AU228045.1,
INSD:AV441464.1,INSD:ES045615.1,INSD:EL030512.1,
INSD:ES071515.1,INSD:AV546536.1,INSD:DR238547.1,
INSD:ES168325.1,INSD:ES164479.1,INSD:AV546451.1,
INSD:DR238548.1"
/inference="similar to RNA sequence,
mRNA:INSD:BX830384.1,INSD:BX830370.1,INSD:AY087997.1"
/note="unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED
IN: chloroplast; EXPRESSED IN: 20 plant structures;
EXPRESSED DURING: 9 growth stages; Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink)."
/codon_start=1
/product="uncharacterized protein"
/protein_id="NP_568186.1"
/db_xref="GeneID:830689"
/db_xref="TAIR:AT5G07950"
/db_xref="Araport:AT5G07950"
/translation="MSISQFPPPASPSPASSSRSLASSSPSPGSFSSSMRLWRPAAQR
NLRNQWSNLSNCRQQWIVACSAGRSHATLLVNSYLSQKYMPMMELGVLSDMFDIDKKA
LKKLFTQQSSYRIKLLSSYKEMVAVVVEMVNASRSLRCYTKLSTGSLIQFSGTKEDSN
DAGDCGGIPVFNFWNVSAFEKMAEELVEMFKREVMLKRLLIMELISLSTEVPQPINNS
WSDELYHGEFDHLTKCSLYSMEVAKPVLPRVKDYNIGSSSISHTNQPTAEILQIYLTT
WLAEVNIDTHRVDEILALVGEEIRVTF"
ORIGIN
1 aaaacaaact atcgccggcc gttcaattcc cggcgacgta acagagttta ggagtgtgac
61 tcaagctcaa aaaactcgtt ttgtattcga tgagcatctc gcagtttccg ccgcctgctt
121 ctccatctcc ggcgtcttct tcgcgatcgc tggcttcttc atctccatct ccggggagtt
181 tttcgtcatc gatgaggcta tggagaccag ctgctcagcg gaatcttagg aaccagtggt
241 ctaacctgtc gaattgtcgg caacagtgga tcgtcgcttg ttctgcggga agatctcacg
301 ctactttgct agtcaattcg tatctgtcac aaaagtatat gccaatgatg gagcttggtg
361 tgttgagtga catgtttgat atcgacaaga aagctttgaa gaagctgttt acgcaacaga
421 gttcctatcg aatcaagctt ttatcttcgt acaaggaaat ggtagctgtt gttgttgaga
481 tggtaaatgc aagcagatct ctgagatgtt acacgaagct gagtaccggg tcacttatac
541 agttctctgg cactaaggaa gattcaaatg atgctggaga ttgcggtggc attcctgtgt
601 ttaatttttg gaatgtctct gcatttgaga agatggctga ggagcttgtg gagatgttca
661 aacgcgaagt aatgctaaag agattgctca taatggaact gatctcttta agcactgaag
721 ttcctcaacc catcaacaac agttggtcag atgagcttta ccatggagaa tttgatcatc
781 tcaccaaatg ttctttatat tctatggaag tagctaagcc agttctcccc agagtgaaag
841 attataatat cggtagttct tctatatcac ataccaacca gccaaccgca gaaattttgc
901 agatttactt gacaacttgg cttgcagaag taaacatcga cactcatagg gtggatgaga
961 tattagcttt ggttggggaa gaaattagag tcaccttcta aatctcgaaa ggtgttcaca
1021 agttcagctt ctggttaagt ttcagtgact tttatacaaa gcacaactga ttctacaaaa
1081 gtactcaagg acttgagaga gagagaggtg gttagaaccg tagctgtgta aacaaaaatt
1141 gccacttact gctatatttt agcttgttta ctggatttct tactggggca ctgtactgag
1201 cgatatttct ttactaaagt atacaaatgg atttaactta caatgtt
//