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Arabidopsis thaliana RING/U-box superfamily protein (ATL43), mRNA

NCBI Reference Sequence: NM_120663.3

FASTA Graphics 

LOCUS       NM_120663               1780 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana RING/U-box superfamily protein (ATL43), mRNA.
ACCESSION   NM_120663
VERSION     NM_120663.3
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1780)
  AUTHORS   Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
            Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
            Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
            Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
            Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
            Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
            Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
            Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
            Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
            Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
            Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
            See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
            Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
            Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
            Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
            Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
            Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
            Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
            Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
            Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
            Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
            Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
            Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
  CONSRTM   Kazusa DNA Research Institute; Cold Spring Harbor and Washington
            University in St Louis Sequencing Consortium; European Union
            Arabidopsis Genome Sequencing Consortium
  TITLE     Sequence and analysis of chromosome 5 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 823-826 (2000)
   PUBMED   11130714
REFERENCE   2  (bases 1 to 1780)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1780)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1780)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003076).
            
            On Sep 12, 2016 this sequence version replaced NM_120663.2.
FEATURES             Location/Qualifiers
     source          1..1780
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="5"
                     /ecotype="Columbia"
     gene            1..1780
                     /gene="ATL43"
                     /locus_tag="AT5G05810"
                     /gene_synonym="MJJ3.23; MJJ3_23"
                     /db_xref="Araport:AT5G05810"
                     /db_xref="GeneID:830466"
                     /db_xref="TAIR:AT5G05810"
     CDS             229..1452
                     /gene="ATL43"
                     /locus_tag="AT5G05810"
                     /gene_synonym="MJJ3.23; MJJ3_23"
                     /inference="Similar to RNA sequence,
                     EST:INSD:ES130044.1,INSD:EH979131.1,INSD:EL091008.1,
                     INSD:ES194414.1,INSD:ES100220.1,INSD:ES047035.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:BX829937.1,INSD:BT020620.1,INSD:BT021932.1"
                     /note="ATL43; FUNCTIONS IN: zinc ion binding; LOCATED IN:
                     endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc
                     finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4
                     RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana
                     protein match is: RING/U-box superfamily protein
                     (TAIR:AT2G20030.1); Has 8903 Blast hits to 8881 proteins
                     in 285 species: Archae - 0; Bacteria - 2; Metazoa - 2283;
                     Fungi - 641; Plants - 4839; Viruses - 72; Other Eukaryotes
                     - 1066 (source: NCBI BLink)."
                     /codon_start=1
                     /product="RING/U-box superfamily protein"
                     /protein_id="NP_196200.3"
                     /db_xref="GeneID:830466"
                     /db_xref="TAIR:AT5G05810"
                     /db_xref="Araport:AT5G05810"
                     /translation="MSSSSLILLFSTLSLFLNVSLADNHTAVVITTSDTPPPLPPPSP
                     PPRHNFTSSLMPGIAVVIAVLTAFFSLTFLLLLYVKHCKRRNGSVYVNHPQRFAITRY
                     GGGYYNGGGVVGGRKNSGIDRSVIESLPVFRFGALSGHKDGLECAVCLARFEPTEVLR
                     LLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLIGDCNSWFELQFSKDESNSV
                     NNNPPGLTRFIPVSRISGRHSSAGERASRLNEIRTSSSYKSNPMSFRRSLDSSLKVND
                     AGEEKSESVAVNCLDRLQRKDGLLLIPNRESFEGRFEHRIIISGGNRDDQRWSEVRPS
                     DLLYLRSEMILSDCRKLAAAEGGRDVINGRSVSELTGIERRRRWGGEPRQRQATAVIS
                     RWLAWSHRASASSIV"
ORIGIN      
        1 aaatttgtaa ggcatgaaag atgaaagaag ggagtcatgt ttttaatgca tcctctttgt
       61 cctcattcac tttgttttct ttccctttta taaaaacctc tctccctatc tcacacactc
      121 acaaaagtgt ctcccttatt ttcaggcact tcaaaataaa tatacgaaaa taaaataacc
      181 atttcttaag tctaaagacc ttctctttca actagaagcc tttaagccat gtcttcttct
      241 tccttgatac ttctcttctc tactctctct ctctttctca atgtctcact cgcagacaat
      301 cacacggcgg ttgttataac aacctcagat actccaccgc cacttcctcc gccttctcca
      361 ccgccacggc ataacttcac ttcctctctc atgcccggaa tcgcagtcgt tatcgccgtc
      421 ctcactgcgt ttttctctct cactttctta cttctcctct acgtcaaaca ctgtaaacga
      481 cgaaacggca gcgtttacgt aaaccacccg cagcgtttcg caatcactag atacggagga
      541 ggatattaca acggtggagg agtagtagga ggaaggaaaa actccggtat agaccggtcc
      601 gtgattgaat ctttaccggt tttccggttt ggtgcattaa gcggtcacaa ggatggttta
      661 gagtgcgccg tgtgtctcgc tcggttcgaa ccgacggaag ttctgaggtt attgccgaaa
      721 tgtaaacacg ccttccacgt ggaatgtgtt gacacgtggc ttgacgctca ctccacttgc
      781 ccgctttgcc gttaccgggt cgacccggaa gatatactct tgatcggtga ttgtaactcc
      841 tggttcgagc tccagttctc taaagatgaa tcaaacagtg ttaataataa tcctcccggt
      901 ttaacccggt ttattccggt tagtcgaatt tccggtcgtc attcctcggc tggtgaacga
      961 gcgagtcgac tcaacgagat tagaacatct tcgtcgtata aatcgaatcc gatgtcgttt
     1021 cggagatcac tcgatagctc tctgaaagtt aacgacgccg gcgaggagaa atcggaatct
     1081 gtcgccgtta attgcttgga tcgtctacag agaaaagacg gattgttgtt gattccgaat
     1141 cgggagagct ttgaggggag atttgagcac cggataatta tctccggcgg gaatcgagac
     1201 gatcagaggt ggagcgaagt aaggccgtcg gatcttttgt atttacgatc agagatgata
     1261 ctcagcgatt gccggaaatt agctgcggcg gagggtggca gagatgtaat taacgggaga
     1321 agtgtgtcgg agttaacggg aattgagaga cggaggagat ggggaggaga gccgagacaa
     1381 cgacaagcca cggcggtgat ttcgaggtgg ctcgcttggt cccaccgtgc ctccgcttcc
     1441 agcattgttt aaaatttata ttatgatcct tttagttttg ttttataaca gttttggccg
     1501 gtttagtttt gttctataac atttagccca aactaattta ttagaggaat gcaacaatgg
     1561 caggtaggga taaattagtg ttgttctttt ttttttttga aatgcgaatt ttttggagta
     1621 tgcacgagtg caaggaagca caaatgattt ctttttgtat tttaattttt gaggaaatat
     1681 taaggaaagt gaaaggttga gttttttaaa attaatgtct ttcttggtgt aataaagggc
     1741 gagtattggg gatctgataa ctaagtttaa atagaaaaag
//
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Reference sequence information

More about the ATL43 gene

  • ATL43 gene
    Also Known As: AT5G05810, MJJ3.23, MJJ...

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