LOCUS NM_120663 1780 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana RING/U-box superfamily protein (ATL43), mRNA.
ACCESSION NM_120663
VERSION NM_120663.3
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1780)
AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
CONSRTM Kazusa DNA Research Institute; Cold Spring Harbor and Washington
University in St Louis Sequencing Consortium; European Union
Arabidopsis Genome Sequencing Consortium
TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 823-826 (2000)
PUBMED 11130714
REFERENCE 2 (bases 1 to 1780)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1780)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1780)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003076).
On Sep 12, 2016 this sequence version replaced NM_120663.2.
FEATURES Location/Qualifiers
source 1..1780
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="5"
/ecotype="Columbia"
gene 1..1780
/gene="ATL43"
/locus_tag="AT5G05810"
/gene_synonym="MJJ3.23; MJJ3_23"
/db_xref="Araport:AT5G05810"
/db_xref="GeneID:830466"
/db_xref="TAIR:AT5G05810"
CDS 229..1452
/gene="ATL43"
/locus_tag="AT5G05810"
/gene_synonym="MJJ3.23; MJJ3_23"
/inference="Similar to RNA sequence,
EST:INSD:ES130044.1,INSD:EH979131.1,INSD:EL091008.1,
INSD:ES194414.1,INSD:ES100220.1,INSD:ES047035.1"
/inference="similar to RNA sequence,
mRNA:INSD:BX829937.1,INSD:BT020620.1,INSD:BT021932.1"
/note="ATL43; FUNCTIONS IN: zinc ion binding; LOCATED IN:
endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc
finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4
RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana
protein match is: RING/U-box superfamily protein
(TAIR:AT2G20030.1); Has 8903 Blast hits to 8881 proteins
in 285 species: Archae - 0; Bacteria - 2; Metazoa - 2283;
Fungi - 641; Plants - 4839; Viruses - 72; Other Eukaryotes
- 1066 (source: NCBI BLink)."
/codon_start=1
/product="RING/U-box superfamily protein"
/protein_id="NP_196200.3"
/db_xref="GeneID:830466"
/db_xref="TAIR:AT5G05810"
/db_xref="Araport:AT5G05810"
/translation="MSSSSLILLFSTLSLFLNVSLADNHTAVVITTSDTPPPLPPPSP
PPRHNFTSSLMPGIAVVIAVLTAFFSLTFLLLLYVKHCKRRNGSVYVNHPQRFAITRY
GGGYYNGGGVVGGRKNSGIDRSVIESLPVFRFGALSGHKDGLECAVCLARFEPTEVLR
LLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLIGDCNSWFELQFSKDESNSV
NNNPPGLTRFIPVSRISGRHSSAGERASRLNEIRTSSSYKSNPMSFRRSLDSSLKVND
AGEEKSESVAVNCLDRLQRKDGLLLIPNRESFEGRFEHRIIISGGNRDDQRWSEVRPS
DLLYLRSEMILSDCRKLAAAEGGRDVINGRSVSELTGIERRRRWGGEPRQRQATAVIS
RWLAWSHRASASSIV"
ORIGIN
1 aaatttgtaa ggcatgaaag atgaaagaag ggagtcatgt ttttaatgca tcctctttgt
61 cctcattcac tttgttttct ttccctttta taaaaacctc tctccctatc tcacacactc
121 acaaaagtgt ctcccttatt ttcaggcact tcaaaataaa tatacgaaaa taaaataacc
181 atttcttaag tctaaagacc ttctctttca actagaagcc tttaagccat gtcttcttct
241 tccttgatac ttctcttctc tactctctct ctctttctca atgtctcact cgcagacaat
301 cacacggcgg ttgttataac aacctcagat actccaccgc cacttcctcc gccttctcca
361 ccgccacggc ataacttcac ttcctctctc atgcccggaa tcgcagtcgt tatcgccgtc
421 ctcactgcgt ttttctctct cactttctta cttctcctct acgtcaaaca ctgtaaacga
481 cgaaacggca gcgtttacgt aaaccacccg cagcgtttcg caatcactag atacggagga
541 ggatattaca acggtggagg agtagtagga ggaaggaaaa actccggtat agaccggtcc
601 gtgattgaat ctttaccggt tttccggttt ggtgcattaa gcggtcacaa ggatggttta
661 gagtgcgccg tgtgtctcgc tcggttcgaa ccgacggaag ttctgaggtt attgccgaaa
721 tgtaaacacg ccttccacgt ggaatgtgtt gacacgtggc ttgacgctca ctccacttgc
781 ccgctttgcc gttaccgggt cgacccggaa gatatactct tgatcggtga ttgtaactcc
841 tggttcgagc tccagttctc taaagatgaa tcaaacagtg ttaataataa tcctcccggt
901 ttaacccggt ttattccggt tagtcgaatt tccggtcgtc attcctcggc tggtgaacga
961 gcgagtcgac tcaacgagat tagaacatct tcgtcgtata aatcgaatcc gatgtcgttt
1021 cggagatcac tcgatagctc tctgaaagtt aacgacgccg gcgaggagaa atcggaatct
1081 gtcgccgtta attgcttgga tcgtctacag agaaaagacg gattgttgtt gattccgaat
1141 cgggagagct ttgaggggag atttgagcac cggataatta tctccggcgg gaatcgagac
1201 gatcagaggt ggagcgaagt aaggccgtcg gatcttttgt atttacgatc agagatgata
1261 ctcagcgatt gccggaaatt agctgcggcg gagggtggca gagatgtaat taacgggaga
1321 agtgtgtcgg agttaacggg aattgagaga cggaggagat ggggaggaga gccgagacaa
1381 cgacaagcca cggcggtgat ttcgaggtgg ctcgcttggt cccaccgtgc ctccgcttcc
1441 agcattgttt aaaatttata ttatgatcct tttagttttg ttttataaca gttttggccg
1501 gtttagtttt gttctataac atttagccca aactaattta ttagaggaat gcaacaatgg
1561 caggtaggga taaattagtg ttgttctttt ttttttttga aatgcgaatt ttttggagta
1621 tgcacgagtg caaggaagca caaatgattt ctttttgtat tttaattttt gaggaaatat
1681 taaggaaagt gaaaggttga gttttttaaa attaatgtct ttcttggtgt aataaagggc
1741 gagtattggg gatctgataa ctaagtttaa atagaaaaag
//