LOCUS NM_120257 1236 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana uncharacterized protein (AT5G01790), mRNA.
ACCESSION NM_120257
VERSION NM_120257.5
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1236)
AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
CONSRTM Kazusa DNA Research Institute; Cold Spring Harbor and Washington
University in St Louis Sequencing Consortium; European Union
Arabidopsis Genome Sequencing Consortium
TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 823-826 (2000)
PUBMED 11130714
REFERENCE 2 (bases 1 to 1236)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1236)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1236)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003076).
On Sep 12, 2016 this sequence version replaced NM_120257.4.
FEATURES Location/Qualifiers
source 1..1236
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="5"
/ecotype="Columbia"
gene 1..1236
/locus_tag="AT5G01790"
/gene_synonym="T20L15.60; T20L15_60"
/db_xref="Araport:AT5G01790"
/db_xref="GeneID:831868"
/db_xref="TAIR:AT5G01790"
CDS 230..856
/locus_tag="AT5G01790"
/gene_synonym="T20L15.60; T20L15_60"
/inference="Similar to RNA sequence,
EST:INSD:EG516967.1,INSD:ES052854.1,INSD:ES087009.1,
INSD:ES152420.1,INSD:AV556068.1,INSD:DR382885.1,
INSD:DR358030.1,INSD:ES165735.1,INSD:EL969275.1,
INSD:ES046949.1,INSD:ES151941.1,INSD:AV567657.1,
INSD:T03962.1,INSD:EG516966.1,INSD:EL986476.1"
/inference="similar to RNA sequence,
mRNA:INSD:BT010833.1,INSD:BX833131.1,INSD:BX833182.1,
INSD:BT011294.1,INSD:BT015487.1,INSD:BX833276.1,
INSD:BX833153.1"
/note="unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED
IN: chloroplast; EXPRESSED IN: 19 plant structures;
EXPRESSED DURING: 13 growth stages; Has 121 Blast hits to
121 proteins in 12 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink)."
/codon_start=1
/product="uncharacterized protein"
/protein_id="NP_195799.2"
/db_xref="GeneID:831868"
/db_xref="TAIR:AT5G01790"
/db_xref="Araport:AT5G01790"
/translation="MHTSLPLFPSLSLSHSPKTIMPNAGSERAASLSLKKQDTATFSG
KLPSTKQRFSSVSAACPSFRIYYYDGAAGAVPFEWESHPGTPKHPSSELPTLPPLTPP
PSHFSFSGDQIRRRSKKSTKKILALIPTRLFWLSGDHNGKAKKLSASSPPSLSERVLI
DENEYDLFKFQTERNVMRRFSSFDSSADYPIQRSQSTSCFGIRRCFLC"
ORIGIN
1 tgtaggattg gaccaacaca cttcgagatg tatctttata agttctaact atgagagcta
61 attaaccgca ctattgaaac tattatttca ctatcattaa ttattacatt ttgcttttaa
121 tatatagttt ctatagacac caaagccaaa caaataagcc caaaagtaaa aaccgtacca
181 aagacaccag gcacccatat atacatgata gattgactcc atatgtctca tgcacacatc
241 tctccctctc tttccttccc tctctctctc tcactctccc aagacaataa tgccaaacgc
301 gggatctgag cgggcagctt cactctcact gaaaaagcaa gacaccgcca ccttctccgg
361 taagctaccg tcgaccaaac aacgtttttc gtcggtatca gctgcttgtc cttcctttag
421 aatctactac tacgacggag ccgccggtgc cgtccctttc gaatgggaat ctcatccagg
481 cacacccaaa cacccctcct ctgagctacc tactctgcca cctctcactc ctccgccgtc
541 tcatttctct ttctccggcg accaaatccg ccgccgttcc aaaaagtcca ccaagaaaat
601 cctcgcacta atcccgacaa ggctcttctg gctatcgggc gatcacaatg gtaaggctaa
661 gaaactgtcg gcttcatcac caccatctct gtcggagaga gtgttgatcg acgaaaatga
721 gtacgatctg ttcaagtttc aaacagaaag gaatgtcatg cgaagatttt catccttcga
781 ctcttctgct gactacccaa ttcagagatc acaatccact tcctgcttcg gaatccgcag
841 atgtttcctc tgctaattcc gctgcaaaat ttggaaaata aaacgttgaa attttataaa
901 atgtttttca tatattagtt tattttgtgt tccatcgtct tattattata atatttaatc
961 agtttgtgtc ggtaatgcaa ctccgaatca tataatacgt ttaccttttt gttaaataag
1021 agcaatgaac agttacaaga gttacgtaaa ttgatcagaa gattattata gtaactgtcg
1081 cattcacttt ggtttaaagt gcatgactaa aactttgata atttaagtat agcttttggc
1141 aagtgtgtct ttttgtatat ggatggttcc gtgtaaaaat gtaactgtga gtttgaacaa
1201 gccttctttg gtgttaattt agctgtcttc caagca
//