LOCUS NM_120085 1457 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana Galactose oxidase/kelch repeat superfamily
protein (AT4G39240), mRNA.
ACCESSION NM_120085
VERSION NM_120085.4
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1457)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 1457)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1457)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1457)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003075).
On Apr 18, 2007 this sequence version replaced NM_120085.3.
FEATURES Location/Qualifiers
source 1..1457
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
gene 1..1457
/locus_tag="AT4G39240"
/gene_synonym="T22F8.140; T22F8_140"
/db_xref="Araport:AT4G39240"
/db_xref="GeneID:830080"
/db_xref="TAIR:AT4G39240"
CDS 62..1189
/locus_tag="AT4G39240"
/gene_synonym="T22F8.140; T22F8_140"
/inference="Similar to RNA sequence,
EST:INSD:ES064868.1,INSD:AV828566.1,INSD:EG441420.1,
INSD:EL020344.1,INSD:CB265023.1,INSD:EH924708.1,
INSD:BP583254.1,INSD:BE529182.1,INSD:BP587098.1,
INSD:BP593124.1,INSD:ES061610.1,INSD:BP868423.1,
INSD:BP854807.1,INSD:BP576884.1,INSD:EL208264.1,
INSD:BP658831.1,INSD:T22870.1,INSD:BP590175.1,
INSD:EL026610.1,INSD:ES157970.1,INSD:ES073153.1,
INSD:EH960677.1,INSD:AV819629.1,INSD:BP565248.1,
INSD:BP831955.1,INSD:BP579944.1,INSD:AV819418.1,
INSD:ES209124.1,INSD:AV442228.1,INSD:EL102301.1,
INSD:BP815652.1,INSD:DR285467.1,INSD:BP817385.1,
INSD:EL009308.1,INSD:AV820911.1,INSD:EH830548.1,
INSD:DR254821.1,INSD:DR235484.1,INSD:EH868729.1,
INSD:ES102645.1,INSD:AV807246.1,INSD:ES111228.1,
INSD:BX840857.1,INSD:BP789927.1,INSD:ES206912.1,
INSD:BP585978.1,INSD:BP577994.1,INSD:EL987475.1,
INSD:ES088136.1,INSD:ES060007.1,INSD:ES090253.1,
INSD:AV820783.1,INSD:AV801863.1,INSD:BP649164.1,
INSD:BP624201.1,INSD:BP614995.1,INSD:BP656760.1,
INSD:AV832163.1,INSD:CF652378.1,INSD:EL118597.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BX829204.1,INSD:AY128921.1,INSD:BX828675.1,
INSD:BX828110.1,INSD:AF370467.1"
/note="Galactose oxidase/kelch repeat superfamily protein;
CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like
(InterPro:IPR001810), Galactose oxidase/kelch,
beta-propeller (InterPro:IPR011043), Kelch repeat type 1
(InterPro:IPR006652), Kelch related (InterPro:IPR013089),
Kelch-type beta propeller (InterPro:IPR015915); BEST
Arabidopsis thaliana protein match is: Galactose
oxidase/kelch repeat superfamily protein
(TAIR:AT4G14905.2); Has 1894 Blast hits to 1751 proteins
in 120 species: Archae - 10; Bacteria - 133; Metazoa -
685; Fungi - 4; Plants - 1024; Viruses - 7; Other
Eukaryotes - 31 (source: NCBI BLink)."
/codon_start=1
/product="Galactose oxidase/kelch repeat superfamily
protein"
/protein_id="NP_195635.1"
/db_xref="GeneID:830080"
/db_xref="TAIR:AT4G39240"
/db_xref="Araport:AT4G39240"
/translation="MPFSAASSSSVSSIAEEPPPKKQHDPSPSCSSYLLLLPDEIILN
CLARLPKCYYPVISLVSKTFRRLIASPEIYVERSLLRRTERVLYVVLRSHATETPRWY
TLNFKPFGNDSNNHRLVPIPSFPSIPCWGMSIVAIDSEIYVLGGCIDNELVSTGFVVE
CPSHTCRLLPSMKQARGCAAVGFFDGKLYVIGGCNPLSVNWVEAFDLKTQTWESGLGV
NNVEMHDLTIRSFAIDDKIYIMDRKNSFVYDPKEGTLETDELLDTQWSVGSCVIDGKI
YTFGSKNRIWVFDPIAMVWDRLKGLDDLPDKRDGSRMSNLGGNLAIMFNLEKGSTKIC
CTEIRLERREGGKIWGTVLWSNIVITLKEPSTIVRCLTVTV"
ORIGIN
1 tgatgatcgg ttttgttcat ttgcaacttt tgactaaaaa aagcagctca tagcagcggt
61 tatgcctttt tccgccgcga gttcgagctc cgtaagctca atcgctgaag aaccgccgcc
121 aaagaaacag catgatccat cgccgtcctg ttcatcgtat ctgttactac ttccagacga
181 aatcattctg aattgcttag cacgcttgcc gaaatgttac tacccggtga tttcactcgt
241 ctccaagacc tttaggcgtc tcatagcttc accggagatc tacgttgaaa ggtcattact
301 tcgccgcacc gagcgtgtcc tttatgttgt gcttagatct cacgctacag aaactccccg
361 atggtacact ctcaatttca aaccctttgg aaatgattca aataaccata gattggttcc
421 gattccgtcg tttccttcga ttccttgctg gggaatgtca attgtcgcta ttgattctga
481 aatttacgtc cttggtggat gcattgataa tgaattggtc tccactgggt ttgtcgtcga
541 atgtccatct cacacgtgtc gtctcctccc tagcatgaag caggcacgtg gctgcgccgc
601 cgtgggattt tttgatggga aattgtatgt aatcggaggt tgtaaccctc tgtctgtgaa
661 ttgggtagag gcttttgatc taaagactca aacttgggag tctggtttgg gtgttaataa
721 tgtggaaatg catgacttaa ccatcagaag ttttgcgata gatgataaga tttacattat
781 ggatcgaaag aatagctttg tttatgatcc taaagaaggt acgttggaga ctgatgagtt
841 gttggacaca caatggagtg ttggttcttg cgtcattgat ggaaagattt acacttttgg
901 tagcaagaat agaatatggg tgtttgatcc aattgccatg gtttgggatc gcttgaaggg
961 tctcgacgat cttcctgaca agcgtgatgg ctcgagaatg tcgaatctcg ggggaaatct
1021 tgcgattatg tttaaccttg agaagggttc aaccaaaatc tgttgcacgg agatcagatt
1081 ggaaaggagg gaaggaggaa agatttgggg gacggtcctg tggtctaata ttgtcattac
1141 cttgaaagaa ccttccacca ttgtacgatg tctaactgta acagtttgat aaagcttcaa
1201 gcttgaaaat catatctgta aacgtgtacc ggagcagctt gttctgttca agatgaaaca
1261 aacaacatac gaggctttat tggatattgg tatccagaac ctaatataga tatcttttgg
1321 aactttgggc taagttatgc aatatatttc tcttgtttct ttgttgtacg actcttatgt
1381 atgcaagtat attgtatgat taatagaaac tatgttacca gctgtttgtt taacaaagat
1441 caaaccaata acatttg
//